Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27560 and ABID97_RS27565 are separated by 267 nucleotides ABID97_RS27565 and ABID97_RS27570 overlap by 1 nucleotides ABID97_RS27570 and ABID97_RS27575 overlap by 4 nucleotides
ABID97_RS27560: ABID97_RS27560 - ISNCY family transposase, at 429,306 to 430,721
_RS27560
ABID97_RS27565: ABID97_RS27565 - ABC transporter ATP-binding protein, at 430,989 to 431,711
_RS27565
ABID97_RS27570: ABID97_RS27570 - ABC transporter ATP-binding protein, at 431,711 to 432,574
_RS27570
ABID97_RS27575: ABID97_RS27575 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 432,571 to 433,890
_RS27575
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.975 kb on - strand at 431.099 kb on - strand, within ABID97_RS27565 at 431.159 kb on + strand, within ABID97_RS27565 at 431.159 kb on + strand, within ABID97_RS27565 at 431.209 kb on + strand, within ABID97_RS27565 at 431.210 kb on - strand, within ABID97_RS27565 at 431.555 kb on + strand, within ABID97_RS27565 at 432.402 kb on + strand, within ABID97_RS27570 at 432.403 kb on - strand, within ABID97_RS27570 at 433.400 kb on + strand, within ABID97_RS27575 at 433.400 kb on + strand, within ABID97_RS27575 at 433.406 kb on + strand, within ABID97_RS27575 at 433.422 kb on - strand, within ABID97_RS27575 at 433.496 kb on + strand, within ABID97_RS27575 at 433.496 kb on + strand, within ABID97_RS27575 at 433.497 kb on - strand, within ABID97_RS27575 at 433.497 kb on - strand, within ABID97_RS27575 at 433.497 kb on - strand, within ABID97_RS27575
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 430,975 - +1.0 431,099 - ABID97_RS27565 0.15 +0.1 431,159 + ABID97_RS27565 0.24 -0.0 431,159 + ABID97_RS27565 0.24 -2.9 431,209 + ABID97_RS27565 0.30 +1.0 431,210 - ABID97_RS27565 0.31 -0.6 431,555 + ABID97_RS27565 0.78 -0.6 432,402 + ABID97_RS27570 0.80 -0.2 432,403 - ABID97_RS27570 0.80 +0.1 433,400 + ABID97_RS27575 0.63 +1.2 433,400 + ABID97_RS27575 0.63 -0.6 433,406 + ABID97_RS27575 0.63 -0.1 433,422 - ABID97_RS27575 0.64 +0.4 433,496 + ABID97_RS27575 0.70 +0.4 433,496 + ABID97_RS27575 0.70 -1.5 433,497 - ABID97_RS27575 0.70 -0.9 433,497 - ABID97_RS27575 0.70 -0.0 433,497 - ABID97_RS27575 0.70 -0.8
Or see this region's nucleotide sequence