Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27345 and ABID97_RS27350 are separated by 206 nucleotides ABID97_RS27350 and ABID97_RS27355 are separated by 9 nucleotides ABID97_RS27355 and ABID97_RS27360 are separated by 26 nucleotides
ABID97_RS27345: ABID97_RS27345 - alpha-amylase family glycosyl hydrolase, at 386,590 to 388,212
_RS27345
ABID97_RS27350: ABID97_RS27350 - glutathione S-transferase family protein, at 388,419 to 389,081
_RS27350
ABID97_RS27355: ABID97_RS27355 - RraA family protein, at 389,091 to 389,762
_RS27355
ABID97_RS27360: ABID97_RS27360 - aspartate transaminase, at 389,789 to 390,997
_RS27360
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1 at 387.509 kb on + strand, within ABID97_RS27345 at 387.662 kb on + strand, within ABID97_RS27345 at 387.663 kb on - strand, within ABID97_RS27345 at 387.734 kb on + strand, within ABID97_RS27345 at 387.734 kb on + strand, within ABID97_RS27345 at 387.735 kb on - strand, within ABID97_RS27345 at 387.834 kb on - strand, within ABID97_RS27345 at 388.049 kb on + strand, within ABID97_RS27345 at 388.050 kb on - strand at 388.175 kb on + strand at 388.175 kb on + strand at 388.188 kb on - strand at 388.188 kb on - strand at 389.332 kb on + strand, within ABID97_RS27355 at 389.363 kb on - strand, within ABID97_RS27355 at 389.548 kb on + strand, within ABID97_RS27355 at 389.548 kb on + strand, within ABID97_RS27355 at 389.755 kb on + strand at 390.019 kb on - strand, within ABID97_RS27360
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 387,509 + ABID97_RS27345 0.57 -2.3 387,662 + ABID97_RS27345 0.66 -0.1 387,663 - ABID97_RS27345 0.66 +0.3 387,734 + ABID97_RS27345 0.70 -0.6 387,734 + ABID97_RS27345 0.70 +0.6 387,735 - ABID97_RS27345 0.71 -0.2 387,834 - ABID97_RS27345 0.77 +0.3 388,049 + ABID97_RS27345 0.90 -0.8 388,050 - -2.4 388,175 + -2.1 388,175 + -2.1 388,188 - -0.3 388,188 - +0.1 389,332 + ABID97_RS27355 0.36 +0.2 389,363 - ABID97_RS27355 0.40 -0.5 389,548 + ABID97_RS27355 0.68 -0.0 389,548 + ABID97_RS27355 0.68 -0.1 389,755 + -0.2 390,019 - ABID97_RS27360 0.19 +0.1
Or see this region's nucleotide sequence