Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22665 and ABID97_RS22670 are separated by 32 nucleotides ABID97_RS22670 and ABID97_RS22675 are separated by 26 nucleotides ABID97_RS22675 and ABID97_RS22680 are separated by 21 nucleotides
ABID97_RS22665: ABID97_RS22665 - DMT family transporter, at 4,695,129 to 4,696,037
_RS22665
ABID97_RS22670: ABID97_RS22670 - SDR family oxidoreductase, at 4,696,070 to 4,696,864
_RS22670
ABID97_RS22675: ABID97_RS22675 - DMT family transporter, at 4,696,891 to 4,697,841
_RS22675
ABID97_RS22680: ABID97_RS22680 - gamma-glutamyltransferase family protein, at 4,697,863 to 4,699,476
_RS22680
Position (kb) 4696
4697 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4695.116 kb on - strand at 4695.384 kb on + strand, within ABID97_RS22665 at 4695.384 kb on + strand, within ABID97_RS22665 at 4695.385 kb on - strand, within ABID97_RS22665 at 4695.385 kb on - strand, within ABID97_RS22665 at 4695.399 kb on + strand, within ABID97_RS22665 at 4695.615 kb on + strand, within ABID97_RS22665 at 4695.615 kb on + strand, within ABID97_RS22665 at 4695.615 kb on + strand, within ABID97_RS22665 at 4695.616 kb on - strand, within ABID97_RS22665 at 4695.616 kb on - strand, within ABID97_RS22665 at 4695.616 kb on - strand, within ABID97_RS22665 at 4695.648 kb on + strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.786 kb on + strand, within ABID97_RS22665 at 4695.786 kb on + strand, within ABID97_RS22665 at 4695.787 kb on - strand, within ABID97_RS22665 at 4695.787 kb on - strand, within ABID97_RS22665 at 4695.787 kb on - strand, within ABID97_RS22665 at 4695.856 kb on - strand, within ABID97_RS22665 at 4695.978 kb on + strand at 4695.979 kb on - strand at 4695.979 kb on - strand at 4696.074 kb on + strand at 4696.074 kb on + strand at 4696.125 kb on + strand at 4696.126 kb on - strand at 4696.126 kb on - strand at 4696.126 kb on - strand at 4697.270 kb on + strand, within ABID97_RS22675 at 4697.391 kb on - strand, within ABID97_RS22675 at 4697.439 kb on - strand, within ABID97_RS22675 at 4697.439 kb on - strand, within ABID97_RS22675 at 4697.513 kb on + strand, within ABID97_RS22675 at 4697.513 kb on + strand, within ABID97_RS22675 at 4697.513 kb on + strand, within ABID97_RS22675 at 4697.549 kb on + strand, within ABID97_RS22675 at 4697.550 kb on - strand, within ABID97_RS22675 at 4697.553 kb on - strand, within ABID97_RS22675 at 4697.705 kb on + strand, within ABID97_RS22675
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 4,695,116 - +0.1 4,695,384 + ABID97_RS22665 0.28 -1.8 4,695,384 + ABID97_RS22665 0.28 -2.1 4,695,385 - ABID97_RS22665 0.28 -0.2 4,695,385 - ABID97_RS22665 0.28 -0.0 4,695,399 + ABID97_RS22665 0.30 +0.1 4,695,615 + ABID97_RS22665 0.53 +0.1 4,695,615 + ABID97_RS22665 0.53 -0.8 4,695,615 + ABID97_RS22665 0.53 -1.9 4,695,616 - ABID97_RS22665 0.54 -1.5 4,695,616 - ABID97_RS22665 0.54 -1.1 4,695,616 - ABID97_RS22665 0.54 +0.2 4,695,648 + ABID97_RS22665 0.57 +0.6 4,695,649 - ABID97_RS22665 0.57 +0.7 4,695,649 - ABID97_RS22665 0.57 +0.2 4,695,649 - ABID97_RS22665 0.57 -1.3 4,695,649 - ABID97_RS22665 0.57 -2.1 4,695,786 + ABID97_RS22665 0.72 -0.2 4,695,786 + ABID97_RS22665 0.72 -1.1 4,695,787 - ABID97_RS22665 0.72 +0.1 4,695,787 - ABID97_RS22665 0.72 -0.9 4,695,787 - ABID97_RS22665 0.72 -0.7 4,695,856 - ABID97_RS22665 0.80 +1.0 4,695,978 + +0.8 4,695,979 - -0.1 4,695,979 - +0.3 4,696,074 + -0.3 4,696,074 + +0.4 4,696,125 + -1.0 4,696,126 - +1.2 4,696,126 - +2.2 4,696,126 - -0.2 4,697,270 + ABID97_RS22675 0.40 -0.4 4,697,391 - ABID97_RS22675 0.53 -0.2 4,697,439 - ABID97_RS22675 0.58 +0.1 4,697,439 - ABID97_RS22675 0.58 +0.9 4,697,513 + ABID97_RS22675 0.65 -0.0 4,697,513 + ABID97_RS22675 0.65 -0.7 4,697,513 + ABID97_RS22675 0.65 +0.9 4,697,549 + ABID97_RS22675 0.69 +0.5 4,697,550 - ABID97_RS22675 0.69 +0.3 4,697,553 - ABID97_RS22675 0.70 +1.6 4,697,705 + ABID97_RS22675 0.86 +1.1
Or see this region's nucleotide sequence