Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22575

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22565 and ABID97_RS22570 are separated by 158 nucleotidesABID97_RS22570 and ABID97_RS22575 overlap by 26 nucleotidesABID97_RS22575 and ABID97_RS22580 overlap by 4 nucleotides ABID97_RS22565: ABID97_RS22565 - urea ABC transporter substrate-binding protein, at 4,673,470 to 4,674,738 _RS22565 ABID97_RS22570: ABID97_RS22570 - nucleotidyltransferase domain-containing protein, at 4,674,897 to 4,675,574 _RS22570 ABID97_RS22575: ABID97_RS22575 - hypothetical protein, at 4,675,549 to 4,675,986 _RS22575 ABID97_RS22580: ABID97_RS22580 - PHB depolymerase family esterase, at 4,675,983 to 4,677,047 _RS22580 Position (kb) 4675 4676Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4674.830 kb on - strandat 4674.843 kb on + strandat 4674.853 kb on + strandat 4674.893 kb on + strandat 4675.717 kb on + strand, within ABID97_RS22575at 4675.810 kb on - strand, within ABID97_RS22575at 4675.810 kb on - strand, within ABID97_RS22575at 4675.810 kb on - strand, within ABID97_RS22575at 4675.810 kb on - strand, within ABID97_RS22575at 4675.985 kb on - strandat 4676.648 kb on - strand, within ABID97_RS22580at 4676.695 kb on + strand, within ABID97_RS22580at 4676.695 kb on + strand, within ABID97_RS22580at 4676.848 kb on + strand, within ABID97_RS22580

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,674,830 - -1.0
4,674,843 + -2.9
4,674,853 + -1.0
4,674,893 + -0.1
4,675,717 + ABID97_RS22575 0.38 -5.0
4,675,810 - ABID97_RS22575 0.60 -0.8
4,675,810 - ABID97_RS22575 0.60 -1.5
4,675,810 - ABID97_RS22575 0.60 +0.3
4,675,810 - ABID97_RS22575 0.60 +0.0
4,675,985 - -0.1
4,676,648 - ABID97_RS22580 0.62 -0.2
4,676,695 + ABID97_RS22580 0.67 -0.3
4,676,695 + ABID97_RS22580 0.67 +0.7
4,676,848 + ABID97_RS22580 0.81 -0.7

Or see this region's nucleotide sequence