Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20755

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20750 and ABID97_RS20755 overlap by 4 nucleotidesABID97_RS20755 and ABID97_RS20760 are separated by 104 nucleotides ABID97_RS20750: ABID97_RS20750 - DUF418 domain-containing protein, at 4,286,335 to 4,287,558 _RS20750 ABID97_RS20755: ABID97_RS20755 - MarR family winged helix-turn-helix transcriptional regulator, at 4,287,555 to 4,288,076 _RS20755 ABID97_RS20760: ABID97_RS20760 - tripartite tricarboxylate transporter substrate binding protein, at 4,288,181 to 4,289,173 _RS20760 Position (kb) 4287 4288 4289Strain fitness (log2 ratio) -2 -1 0 1at 4286.588 kb on + strand, within ABID97_RS20750at 4286.589 kb on - strand, within ABID97_RS20750at 4286.589 kb on - strand, within ABID97_RS20750at 4287.026 kb on + strand, within ABID97_RS20750at 4287.027 kb on - strand, within ABID97_RS20750at 4287.065 kb on + strand, within ABID97_RS20750at 4287.066 kb on - strand, within ABID97_RS20750at 4287.066 kb on - strand, within ABID97_RS20750at 4287.185 kb on + strand, within ABID97_RS20750at 4287.354 kb on - strand, within ABID97_RS20750at 4287.444 kb on - strandat 4287.444 kb on - strandat 4288.105 kb on - strandat 4288.105 kb on - strandat 4288.119 kb on + strandat 4288.119 kb on + strandat 4288.129 kb on - strandat 4288.523 kb on + strand, within ABID97_RS20760at 4288.671 kb on - strand, within ABID97_RS20760at 4288.802 kb on + strand, within ABID97_RS20760at 4288.803 kb on - strand, within ABID97_RS20760at 4288.958 kb on + strand, within ABID97_RS20760at 4288.962 kb on - strand, within ABID97_RS20760at 4289.069 kb on + strand, within ABID97_RS20760at 4289.069 kb on + strand, within ABID97_RS20760

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,286,588 + ABID97_RS20750 0.21 +0.1
4,286,589 - ABID97_RS20750 0.21 -1.2
4,286,589 - ABID97_RS20750 0.21 +0.2
4,287,026 + ABID97_RS20750 0.56 +1.2
4,287,027 - ABID97_RS20750 0.57 +0.8
4,287,065 + ABID97_RS20750 0.60 -2.3
4,287,066 - ABID97_RS20750 0.60 +1.7
4,287,066 - ABID97_RS20750 0.60 -0.0
4,287,185 + ABID97_RS20750 0.69 -0.8
4,287,354 - ABID97_RS20750 0.83 -0.5
4,287,444 - -0.6
4,287,444 - -1.0
4,288,105 - -0.8
4,288,105 - +0.6
4,288,119 + -0.1
4,288,119 + +1.2
4,288,129 - +0.4
4,288,523 + ABID97_RS20760 0.34 +1.7
4,288,671 - ABID97_RS20760 0.49 -2.7
4,288,802 + ABID97_RS20760 0.63 -0.2
4,288,803 - ABID97_RS20760 0.63 -0.8
4,288,958 + ABID97_RS20760 0.78 -0.6
4,288,962 - ABID97_RS20760 0.79 -0.6
4,289,069 + ABID97_RS20760 0.89 +0.0
4,289,069 + ABID97_RS20760 0.89 -0.1

Or see this region's nucleotide sequence