Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15330

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15325 and ABID97_RS15330 are separated by 59 nucleotidesABID97_RS15330 and ABID97_RS15335 overlap by 47 nucleotides ABID97_RS15325: ABID97_RS15325 - FAD-dependent oxidoreductase, at 3,170,148 to 3,171,239 _RS15325 ABID97_RS15330: ABID97_RS15330 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,171,299 to 3,172,159 _RS15330 ABID97_RS15335: ABID97_RS15335 - cytosine permease, at 3,172,113 to 3,173,453 _RS15335 Position (kb) 3171 3172 3173Strain fitness (log2 ratio) -1 0 1 2at 3170.500 kb on + strand, within ABID97_RS15325at 3170.501 kb on - strand, within ABID97_RS15325at 3172.525 kb on + strand, within ABID97_RS15335at 3172.537 kb on + strand, within ABID97_RS15335at 3172.537 kb on + strand, within ABID97_RS15335at 3172.663 kb on + strand, within ABID97_RS15335at 3172.663 kb on + strand, within ABID97_RS15335at 3172.663 kb on + strand, within ABID97_RS15335at 3172.664 kb on - strand, within ABID97_RS15335at 3172.664 kb on - strand, within ABID97_RS15335at 3172.753 kb on + strand, within ABID97_RS15335

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,170,500 + ABID97_RS15325 0.32 -0.5
3,170,501 - ABID97_RS15325 0.32 -1.4
3,172,525 + ABID97_RS15335 0.31 +1.8
3,172,537 + ABID97_RS15335 0.32 -0.1
3,172,537 + ABID97_RS15335 0.32 -1.7
3,172,663 + ABID97_RS15335 0.41 +0.3
3,172,663 + ABID97_RS15335 0.41 +1.2
3,172,663 + ABID97_RS15335 0.41 +0.5
3,172,664 - ABID97_RS15335 0.41 +1.8
3,172,664 - ABID97_RS15335 0.41 -1.6
3,172,753 + ABID97_RS15335 0.48 -1.3

Or see this region's nucleotide sequence