Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06865 and ABID97_RS06870 are separated by 41 nucleotides ABID97_RS06870 and ABID97_RS06875 are separated by 6 nucleotides ABID97_RS06875 and ABID97_RS06880 are separated by 27 nucleotides
ABID97_RS06865: ABID97_RS06865 - galactofuranose ABC transporter, permease protein YjfF, at 1,449,740 to 1,450,768
_RS06865
ABID97_RS06870: ABID97_RS06870 - IlvD/Edd family dehydratase, at 1,450,810 to 1,452,561
_RS06870
ABID97_RS06875: ABID97_RS06875 - dihydrodipicolinate synthase family protein, at 1,452,568 to 1,453,485
_RS06875
ABID97_RS06880: ABID97_RS06880 - hypothetical protein, at 1,453,513 to 1,453,767
_RS06880
Position (kb)
1450
1451
1452
1453 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1449.824 kb on + strand at 1450.092 kb on + strand, within ABID97_RS06865 at 1450.206 kb on - strand, within ABID97_RS06865 at 1450.379 kb on + strand, within ABID97_RS06865 at 1450.502 kb on + strand, within ABID97_RS06865 at 1450.503 kb on - strand, within ABID97_RS06865 at 1450.503 kb on - strand, within ABID97_RS06865 at 1450.503 kb on - strand, within ABID97_RS06865 at 1450.503 kb on - strand, within ABID97_RS06865 at 1450.601 kb on + strand, within ABID97_RS06865 at 1450.886 kb on - strand at 1451.777 kb on - strand, within ABID97_RS06870 at 1452.070 kb on + strand, within ABID97_RS06870 at 1452.071 kb on - strand, within ABID97_RS06870 at 1452.071 kb on - strand, within ABID97_RS06870 at 1452.071 kb on - strand, within ABID97_RS06870 at 1452.071 kb on - strand, within ABID97_RS06870 at 1452.071 kb on - strand, within ABID97_RS06870 at 1452.469 kb on + strand at 1452.580 kb on + strand at 1452.581 kb on - strand at 1452.815 kb on - strand, within ABID97_RS06875 at 1452.941 kb on - strand, within ABID97_RS06875 at 1453.285 kb on + strand, within ABID97_RS06875 at 1453.286 kb on - strand, within ABID97_RS06875 at 1453.312 kb on + strand, within ABID97_RS06875
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,449,824 + +1.0 1,450,092 + ABID97_RS06865 0.34 -2.6 1,450,206 - ABID97_RS06865 0.45 -1.3 1,450,379 + ABID97_RS06865 0.62 +0.4 1,450,502 + ABID97_RS06865 0.74 -0.1 1,450,503 - ABID97_RS06865 0.74 +0.8 1,450,503 - ABID97_RS06865 0.74 +0.8 1,450,503 - ABID97_RS06865 0.74 -0.2 1,450,503 - ABID97_RS06865 0.74 -2.0 1,450,601 + ABID97_RS06865 0.84 -0.1 1,450,886 - -2.8 1,451,777 - ABID97_RS06870 0.55 -0.3 1,452,070 + ABID97_RS06870 0.72 +0.4 1,452,071 - ABID97_RS06870 0.72 -2.4 1,452,071 - ABID97_RS06870 0.72 -1.6 1,452,071 - ABID97_RS06870 0.72 +1.0 1,452,071 - ABID97_RS06870 0.72 -0.6 1,452,071 - ABID97_RS06870 0.72 -2.1 1,452,469 + +2.5 1,452,580 + +0.7 1,452,581 - -2.3 1,452,815 - ABID97_RS06875 0.27 -0.5 1,452,941 - ABID97_RS06875 0.41 -2.1 1,453,285 + ABID97_RS06875 0.78 -0.7 1,453,286 - ABID97_RS06875 0.78 -0.0 1,453,312 + ABID97_RS06875 0.81 +1.0
Or see this region's nucleotide sequence