Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01875 and ABID97_RS01880 overlap by 10 nucleotides ABID97_RS01880 and ABID97_RS01885 overlap by 17 nucleotides ABID97_RS01885 and ABID97_RS01890 overlap by 11 nucleotides
ABID97_RS01875: ABID97_RS01875 - creatininase family protein, at 371,490 to 372,311
_RS01875
ABID97_RS01880: ABID97_RS01880 - ABC transporter ATP-binding protein, at 372,302 to 373,096
_RS01880
ABID97_RS01885: ABID97_RS01885 - ABC transporter permease, at 373,080 to 373,970
_RS01885
ABID97_RS01890: ABID97_RS01890 - FAD-binding oxidoreductase, at 373,960 to 375,339
_RS01890
Position (kb) 373
374 Strain fitness (log2 ratio) -1
0
1 at 372.248 kb on - strand at 372.713 kb on + strand, within ABID97_RS01880 at 372.921 kb on - strand, within ABID97_RS01880 at 373.284 kb on + strand, within ABID97_RS01885 at 373.284 kb on + strand, within ABID97_RS01885 at 373.285 kb on - strand, within ABID97_RS01885 at 373.285 kb on - strand, within ABID97_RS01885 at 373.285 kb on - strand, within ABID97_RS01885 at 373.524 kb on + strand, within ABID97_RS01885 at 373.524 kb on + strand, within ABID97_RS01885 at 373.524 kb on + strand, within ABID97_RS01885 at 373.525 kb on - strand, within ABID97_RS01885 at 373.525 kb on - strand, within ABID97_RS01885 at 373.525 kb on - strand, within ABID97_RS01885 at 373.525 kb on - strand, within ABID97_RS01885 at 373.650 kb on + strand, within ABID97_RS01885 at 373.969 kb on - strand at 374.075 kb on - strand at 374.075 kb on - strand at 374.228 kb on - strand, within ABID97_RS01890 at 374.662 kb on + strand, within ABID97_RS01890 at 374.663 kb on - strand, within ABID97_RS01890 at 374.755 kb on + strand, within ABID97_RS01890 at 374.755 kb on + strand, within ABID97_RS01890 at 374.755 kb on + strand, within ABID97_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 372,248 - -0.4 372,713 + ABID97_RS01880 0.52 +0.3 372,921 - ABID97_RS01880 0.78 -0.3 373,284 + ABID97_RS01885 0.23 +0.0 373,284 + ABID97_RS01885 0.23 -0.4 373,285 - ABID97_RS01885 0.23 -1.2 373,285 - ABID97_RS01885 0.23 +0.2 373,285 - ABID97_RS01885 0.23 +0.4 373,524 + ABID97_RS01885 0.50 +0.1 373,524 + ABID97_RS01885 0.50 -0.3 373,524 + ABID97_RS01885 0.50 -0.0 373,525 - ABID97_RS01885 0.50 +1.7 373,525 - ABID97_RS01885 0.50 +0.4 373,525 - ABID97_RS01885 0.50 +0.2 373,525 - ABID97_RS01885 0.50 +0.6 373,650 + ABID97_RS01885 0.64 +0.6 373,969 - -0.6 374,075 - +1.6 374,075 - +0.3 374,228 - ABID97_RS01890 0.19 -0.2 374,662 + ABID97_RS01890 0.51 +1.0 374,663 - ABID97_RS01890 0.51 -0.5 374,755 + ABID97_RS01890 0.58 -0.5 374,755 + ABID97_RS01890 0.58 +0.1 374,755 + ABID97_RS01890 0.58 -0.4
Or see this region's nucleotide sequence