Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01235 and ABID97_RS01240 are separated by 209 nucleotides ABID97_RS01240 and ABID97_RS01245 overlap by 4 nucleotides ABID97_RS01245 and ABID97_RS01250 overlap by 4 nucleotides
ABID97_RS01235: ABID97_RS01235 - LysR family transcriptional regulator, at 253,055 to 253,993
_RS01235
ABID97_RS01240: ABID97_RS01240 - biotin carboxylase N-terminal domain-containing protein, at 254,203 to 255,612
_RS01240
ABID97_RS01245: ABID97_RS01245 - 5-oxoprolinase subunit PxpB, at 255,609 to 256,355
_RS01245
ABID97_RS01250: ABID97_RS01250 - biotin-dependent carboxyltransferase family protein, at 256,352 to 257,302
_RS01250
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 253.425 kb on + strand, within ABID97_RS01235 at 253.503 kb on + strand, within ABID97_RS01235 at 253.504 kb on - strand, within ABID97_RS01235 at 253.644 kb on - strand, within ABID97_RS01235 at 254.294 kb on - strand at 254.378 kb on - strand, within ABID97_RS01240 at 254.378 kb on - strand, within ABID97_RS01240 at 254.798 kb on - strand, within ABID97_RS01240 at 254.798 kb on - strand, within ABID97_RS01240 at 255.455 kb on + strand, within ABID97_RS01240 at 255.456 kb on - strand, within ABID97_RS01240 at 255.745 kb on + strand, within ABID97_RS01245 at 255.861 kb on + strand, within ABID97_RS01245 at 255.862 kb on - strand, within ABID97_RS01245 at 255.955 kb on - strand, within ABID97_RS01245 at 256.087 kb on - strand, within ABID97_RS01245 at 256.087 kb on - strand, within ABID97_RS01245 at 256.192 kb on - strand, within ABID97_RS01245
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 253,425 + ABID97_RS01235 0.39 +0.9 253,503 + ABID97_RS01235 0.48 -0.7 253,504 - ABID97_RS01235 0.48 +1.7 253,644 - ABID97_RS01235 0.63 -0.4 254,294 - -0.1 254,378 - ABID97_RS01240 0.12 -0.1 254,378 - ABID97_RS01240 0.12 -1.2 254,798 - ABID97_RS01240 0.42 -3.1 254,798 - ABID97_RS01240 0.42 -0.4 255,455 + ABID97_RS01240 0.89 -1.1 255,456 - ABID97_RS01240 0.89 -0.4 255,745 + ABID97_RS01245 0.18 -1.6 255,861 + ABID97_RS01245 0.34 +1.0 255,862 - ABID97_RS01245 0.34 -0.0 255,955 - ABID97_RS01245 0.46 +0.3 256,087 - ABID97_RS01245 0.64 +0.4 256,087 - ABID97_RS01245 0.64 +0.5 256,192 - ABID97_RS01245 0.78 -3.4
Or see this region's nucleotide sequence