Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01100 and ABID97_RS01105 are separated by 166 nucleotides ABID97_RS01105 and ABID97_RS01110 are separated by 61 nucleotides ABID97_RS01110 and ABID97_RS01115 are separated by 46 nucleotides
ABID97_RS01100: ABID97_RS01100 - ABC transporter ATP-binding protein, at 222,458 to 223,270
_RS01100
ABID97_RS01105: ABID97_RS01105 - AMP-binding protein, at 223,437 to 224,684
_RS01105
ABID97_RS01110: ABID97_RS01110 - citrate/2-methylcitrate synthase, at 224,746 to 225,000
_RS01110
ABID97_RS01115: ABID97_RS01115 - citrate/2-methylcitrate synthase, at 225,047 to 225,946
_RS01115
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1 at 222.506 kb on + strand at 222.506 kb on + strand at 222.799 kb on + strand, within ABID97_RS01100 at 222.799 kb on + strand, within ABID97_RS01100 at 222.854 kb on + strand, within ABID97_RS01100 at 222.897 kb on - strand, within ABID97_RS01100 at 223.112 kb on + strand, within ABID97_RS01100 at 223.337 kb on + strand at 223.337 kb on + strand at 223.338 kb on - strand at 223.449 kb on + strand at 223.743 kb on + strand, within ABID97_RS01105 at 224.130 kb on + strand, within ABID97_RS01105 at 224.131 kb on - strand, within ABID97_RS01105 at 224.677 kb on - strand at 224.677 kb on - strand at 224.934 kb on - strand, within ABID97_RS01110 at 225.109 kb on - strand at 225.361 kb on - strand, within ABID97_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 222,506 + +0.9 222,506 + -2.2 222,799 + ABID97_RS01100 0.42 +0.4 222,799 + ABID97_RS01100 0.42 +1.4 222,854 + ABID97_RS01100 0.49 +0.6 222,897 - ABID97_RS01100 0.54 -0.0 223,112 + ABID97_RS01100 0.80 -0.6 223,337 + +0.8 223,337 + +0.7 223,338 - -0.1 223,449 + -0.1 223,743 + ABID97_RS01105 0.25 -2.5 224,130 + ABID97_RS01105 0.56 +1.6 224,131 - ABID97_RS01105 0.56 -0.2 224,677 - +0.6 224,677 - +0.5 224,934 - ABID97_RS01110 0.74 +0.0 225,109 - +0.0 225,361 - ABID97_RS01115 0.35 +0.9
Or see this region's nucleotide sequence