Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02405 and RPSI07_RS02410 are separated by 135 nucleotides RPSI07_RS02410 and RPSI07_RS02415 are separated by 181 nucleotides RPSI07_RS02415 and RPSI07_RS24260 are separated by 43 nucleotides RPSI07_RS24260 and RPSI07_RS02420 are separated by 150 nucleotides
RPSI07_RS02405: RPSI07_RS02405 - two-component sensor histidine kinase, at 694,884 to 695,975
_RS02405
RPSI07_RS02410: RPSI07_RS02410 - LysR family transcriptional regulator, at 696,111 to 697,010
_RS02410
RPSI07_RS02415: RPSI07_RS02415 - DoxX family protein, at 697,192 to 697,596
_RS02415
RPSI07_RS24260: RPSI07_RS24260 - 2,5-didehydrogluconate reductase, at 697,640 to 697,810
_RS24260
RPSI07_RS02420: RPSI07_RS02420 - malonic semialdehyde reductase, at 697,961 to 698,593
_RS02420
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 695.195 kb on + strand, within RPSI07_RS02405 at 695.595 kb on + strand, within RPSI07_RS02405 at 695.595 kb on + strand, within RPSI07_RS02405 at 695.635 kb on - strand, within RPSI07_RS02405 at 695.635 kb on - strand, within RPSI07_RS02405 at 695.935 kb on + strand at 695.935 kb on + strand at 695.935 kb on + strand at 695.935 kb on + strand at 695.935 kb on + strand at 695.936 kb on - strand at 695.936 kb on - strand at 695.936 kb on - strand at 695.992 kb on + strand at 695.992 kb on + strand at 695.993 kb on - strand at 696.024 kb on + strand at 696.025 kb on - strand at 696.141 kb on + strand at 696.142 kb on - strand at 696.142 kb on - strand at 696.570 kb on + strand, within RPSI07_RS02410 at 696.601 kb on + strand, within RPSI07_RS02410 at 696.601 kb on + strand, within RPSI07_RS02410 at 696.601 kb on + strand, within RPSI07_RS02410 at 696.602 kb on - strand, within RPSI07_RS02410 at 696.602 kb on - strand, within RPSI07_RS02410 at 696.625 kb on + strand, within RPSI07_RS02410 at 696.625 kb on + strand, within RPSI07_RS02410 at 696.625 kb on + strand, within RPSI07_RS02410 at 696.626 kb on - strand, within RPSI07_RS02410 at 696.626 kb on - strand, within RPSI07_RS02410 at 697.015 kb on - strand at 697.027 kb on - strand at 697.027 kb on - strand at 697.027 kb on - strand at 697.032 kb on + strand at 697.033 kb on - strand at 697.057 kb on - strand at 697.058 kb on + strand at 697.058 kb on + strand at 697.065 kb on + strand at 697.066 kb on - strand at 697.279 kb on - strand, within RPSI07_RS02415 at 697.300 kb on + strand, within RPSI07_RS02415 at 697.300 kb on + strand, within RPSI07_RS02415 at 697.300 kb on + strand, within RPSI07_RS02415 at 697.301 kb on - strand, within RPSI07_RS02415 at 697.301 kb on - strand, within RPSI07_RS02415 at 697.301 kb on - strand, within RPSI07_RS02415 at 697.340 kb on - strand, within RPSI07_RS02415 at 697.670 kb on - strand, within RPSI07_RS24260 at 697.766 kb on - strand, within RPSI07_RS24260
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 695,195 + RPSI07_RS02405 0.28 -0.5 695,595 + RPSI07_RS02405 0.65 -0.8 695,595 + RPSI07_RS02405 0.65 -0.9 695,635 - RPSI07_RS02405 0.69 -1.8 695,635 - RPSI07_RS02405 0.69 +0.7 695,935 + +0.7 695,935 + +0.1 695,935 + -0.3 695,935 + +0.1 695,935 + +1.4 695,936 - -0.6 695,936 - +1.5 695,936 - -0.1 695,992 + -0.3 695,992 + -0.3 695,993 - -0.6 696,024 + +0.2 696,025 - -0.4 696,141 + -0.1 696,142 - -1.0 696,142 - +0.3 696,570 + RPSI07_RS02410 0.51 -0.9 696,601 + RPSI07_RS02410 0.54 -0.4 696,601 + RPSI07_RS02410 0.54 -2.2 696,601 + RPSI07_RS02410 0.54 -0.3 696,602 - RPSI07_RS02410 0.55 -0.4 696,602 - RPSI07_RS02410 0.55 -0.3 696,625 + RPSI07_RS02410 0.57 +1.0 696,625 + RPSI07_RS02410 0.57 +0.3 696,625 + RPSI07_RS02410 0.57 -0.4 696,626 - RPSI07_RS02410 0.57 +0.3 696,626 - RPSI07_RS02410 0.57 +1.5 697,015 - +0.3 697,027 - +1.1 697,027 - -0.3 697,027 - +1.1 697,032 + -0.4 697,033 - +0.1 697,057 - +0.5 697,058 + -1.4 697,058 + +1.0 697,065 + -1.3 697,066 - -2.4 697,279 - RPSI07_RS02415 0.21 -0.8 697,300 + RPSI07_RS02415 0.27 -0.4 697,300 + RPSI07_RS02415 0.27 -1.3 697,300 + RPSI07_RS02415 0.27 +0.5 697,301 - RPSI07_RS02415 0.27 -0.5 697,301 - RPSI07_RS02415 0.27 -0.4 697,301 - RPSI07_RS02415 0.27 +0.3 697,340 - RPSI07_RS02415 0.37 +2.9 697,670 - RPSI07_RS24260 0.18 -0.3 697,766 - RPSI07_RS24260 0.74 +0.2
Or see this region's nucleotide sequence