Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_832 and PfGW456L13_833 are separated by 17 nucleotides PfGW456L13_833 and PfGW456L13_834 are separated by 267 nucleotides
PfGW456L13_832 - SrfB, at 935,982 to 939,047
_832
PfGW456L13_833 - putative virulence factor, at 939,065 to 940,432
_833
PfGW456L13_834 - FIG00963784: hypothetical protein, at 940,700 to 941,914
_834
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 938.107 kb on + strand, within PfGW456L13_832 at 938.107 kb on + strand, within PfGW456L13_832 at 938.107 kb on + strand, within PfGW456L13_832 at 938.108 kb on - strand, within PfGW456L13_832 at 938.147 kb on + strand, within PfGW456L13_832 at 938.147 kb on + strand, within PfGW456L13_832 at 938.148 kb on - strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.149 kb on + strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.150 kb on - strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.191 kb on + strand, within PfGW456L13_832 at 938.192 kb on - strand, within PfGW456L13_832 at 938.192 kb on - strand, within PfGW456L13_832 at 938.192 kb on - strand, within PfGW456L13_832 at 938.192 kb on - strand, within PfGW456L13_832 at 938.192 kb on - strand, within PfGW456L13_832 at 938.192 kb on - strand, within PfGW456L13_832 at 938.410 kb on + strand, within PfGW456L13_832 at 938.411 kb on - strand, within PfGW456L13_832 at 938.411 kb on - strand, within PfGW456L13_832 at 938.606 kb on - strand, within PfGW456L13_832 at 938.666 kb on + strand, within PfGW456L13_832 at 938.667 kb on - strand, within PfGW456L13_832 at 938.670 kb on - strand, within PfGW456L13_832 at 938.783 kb on + strand at 938.784 kb on - strand at 938.867 kb on - strand at 938.893 kb on + strand at 938.893 kb on + strand at 938.893 kb on + strand at 938.893 kb on + strand at 938.893 kb on + strand at 938.894 kb on - strand at 938.894 kb on - strand at 938.894 kb on - strand at 939.066 kb on + strand at 939.066 kb on + strand at 939.174 kb on + strand at 939.174 kb on + strand at 939.174 kb on + strand at 939.174 kb on + strand at 939.174 kb on + strand at 939.174 kb on + strand at 939.174 kb on + strand at 939.174 kb on + strand at 939.175 kb on - strand at 939.175 kb on - strand at 939.238 kb on + strand, within PfGW456L13_833 at 939.238 kb on + strand, within PfGW456L13_833 at 939.238 kb on + strand, within PfGW456L13_833 at 939.238 kb on + strand, within PfGW456L13_833 at 939.239 kb on - strand, within PfGW456L13_833 at 939.239 kb on - strand, within PfGW456L13_833 at 939.239 kb on - strand, within PfGW456L13_833 at 939.239 kb on - strand, within PfGW456L13_833 at 939.239 kb on - strand, within PfGW456L13_833 at 939.240 kb on - strand, within PfGW456L13_833 at 939.241 kb on + strand, within PfGW456L13_833 at 939.241 kb on + strand, within PfGW456L13_833 at 939.242 kb on - strand, within PfGW456L13_833 at 939.284 kb on + strand, within PfGW456L13_833 at 939.284 kb on + strand, within PfGW456L13_833 at 939.284 kb on + strand, within PfGW456L13_833 at 939.284 kb on + strand, within PfGW456L13_833 at 939.284 kb on + strand, within PfGW456L13_833 at 939.284 kb on + strand, within PfGW456L13_833 at 939.285 kb on - strand, within PfGW456L13_833 at 939.285 kb on - strand, within PfGW456L13_833 at 939.285 kb on - strand, within PfGW456L13_833 at 939.285 kb on - strand, within PfGW456L13_833 at 939.319 kb on - strand, within PfGW456L13_833 at 939.319 kb on - strand, within PfGW456L13_833 at 939.319 kb on - strand, within PfGW456L13_833 at 939.329 kb on + strand, within PfGW456L13_833 at 939.329 kb on + strand, within PfGW456L13_833 at 939.375 kb on + strand, within PfGW456L13_833 at 939.375 kb on + strand, within PfGW456L13_833 at 939.376 kb on - strand, within PfGW456L13_833 at 939.376 kb on - strand, within PfGW456L13_833 at 939.539 kb on + strand, within PfGW456L13_833 at 939.540 kb on - strand, within PfGW456L13_833 at 939.540 kb on - strand, within PfGW456L13_833 at 939.540 kb on - strand, within PfGW456L13_833 at 939.540 kb on - strand, within PfGW456L13_833 at 939.656 kb on + strand, within PfGW456L13_833 at 939.656 kb on + strand, within PfGW456L13_833 at 939.656 kb on + strand, within PfGW456L13_833 at 939.656 kb on + strand, within PfGW456L13_833 at 939.656 kb on + strand, within PfGW456L13_833 at 939.657 kb on - strand, within PfGW456L13_833 at 939.657 kb on - strand, within PfGW456L13_833 at 939.657 kb on - strand, within PfGW456L13_833 at 939.764 kb on + strand, within PfGW456L13_833 at 939.945 kb on - strand, within PfGW456L13_833 at 940.035 kb on + strand, within PfGW456L13_833 at 940.035 kb on + strand, within PfGW456L13_833 at 940.035 kb on + strand, within PfGW456L13_833 at 940.035 kb on + strand, within PfGW456L13_833 at 940.036 kb on - strand, within PfGW456L13_833 at 940.036 kb on - strand, within PfGW456L13_833 at 940.251 kb on + strand, within PfGW456L13_833 at 940.251 kb on + strand, within PfGW456L13_833 at 940.252 kb on - strand, within PfGW456L13_833 at 940.415 kb on + strand at 940.415 kb on + strand at 940.415 kb on + strand at 940.415 kb on + strand at 940.415 kb on + strand at 940.415 kb on + strand at 940.416 kb on - strand at 940.416 kb on - strand at 940.418 kb on + strand at 940.419 kb on - strand at 940.419 kb on - strand at 940.419 kb on - strand at 940.482 kb on + strand at 940.482 kb on + strand at 940.482 kb on + strand at 940.482 kb on + strand at 940.482 kb on + strand at 940.483 kb on - strand at 940.483 kb on - strand at 940.483 kb on - strand at 940.483 kb on - strand at 940.498 kb on + strand at 940.498 kb on + strand at 940.557 kb on + strand at 940.557 kb on + strand at 940.558 kb on - strand at 940.558 kb on - strand at 940.558 kb on - strand at 940.558 kb on - strand at 940.566 kb on - strand at 940.566 kb on - strand at 940.570 kb on + strand at 940.570 kb on + strand at 940.570 kb on + strand at 940.570 kb on + strand at 940.570 kb on + strand at 940.570 kb on + strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.571 kb on - strand at 940.589 kb on + strand at 940.589 kb on + strand at 940.589 kb on + strand at 940.589 kb on + strand at 940.590 kb on - strand at 940.590 kb on - strand at 940.590 kb on - strand at 940.590 kb on - strand at 940.601 kb on + strand at 940.601 kb on + strand at 940.602 kb on - strand at 940.605 kb on + strand at 940.605 kb on + strand at 940.606 kb on - strand at 940.626 kb on + strand at 940.636 kb on + strand at 940.636 kb on + strand at 940.636 kb on + strand at 940.636 kb on + strand at 940.769 kb on + strand at 940.769 kb on + strand at 940.770 kb on - strand at 940.770 kb on - strand at 941.105 kb on + strand, within PfGW456L13_834 at 941.219 kb on + strand, within PfGW456L13_834 at 941.220 kb on - strand, within PfGW456L13_834 at 941.220 kb on - strand, within PfGW456L13_834 at 941.313 kb on + strand, within PfGW456L13_834 at 941.314 kb on - strand, within PfGW456L13_834 at 941.354 kb on - strand, within PfGW456L13_834 at 941.366 kb on + strand, within PfGW456L13_834 at 941.366 kb on + strand, within PfGW456L13_834 at 941.366 kb on + strand, within PfGW456L13_834 at 941.379 kb on - strand, within PfGW456L13_834 at 941.379 kb on - strand, within PfGW456L13_834
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 938,107 + PfGW456L13_832 0.69 +0.8 938,107 + PfGW456L13_832 0.69 -3.0 938,107 + PfGW456L13_832 0.69 +1.8 938,108 - PfGW456L13_832 0.69 -0.6 938,147 + PfGW456L13_832 0.71 +0.5 938,147 + PfGW456L13_832 0.71 -0.1 938,148 - PfGW456L13_832 0.71 -2.8 938,149 + PfGW456L13_832 0.71 -0.4 938,149 + PfGW456L13_832 0.71 +0.3 938,149 + PfGW456L13_832 0.71 +0.2 938,149 + PfGW456L13_832 0.71 -1.1 938,149 + PfGW456L13_832 0.71 -1.8 938,149 + PfGW456L13_832 0.71 -0.8 938,149 + PfGW456L13_832 0.71 +1.1 938,149 + PfGW456L13_832 0.71 -1.2 938,149 + PfGW456L13_832 0.71 +0.0 938,149 + PfGW456L13_832 0.71 -0.4 938,149 + PfGW456L13_832 0.71 +0.0 938,149 + PfGW456L13_832 0.71 +0.9 938,149 + PfGW456L13_832 0.71 +0.4 938,149 + PfGW456L13_832 0.71 +0.4 938,149 + PfGW456L13_832 0.71 +0.6 938,149 + PfGW456L13_832 0.71 -0.4 938,149 + PfGW456L13_832 0.71 -1.7 938,149 + PfGW456L13_832 0.71 -1.5 938,149 + PfGW456L13_832 0.71 -0.8 938,150 - PfGW456L13_832 0.71 +0.0 938,150 - PfGW456L13_832 0.71 +1.0 938,150 - PfGW456L13_832 0.71 -0.2 938,150 - PfGW456L13_832 0.71 -0.5 938,150 - PfGW456L13_832 0.71 -1.4 938,150 - PfGW456L13_832 0.71 +0.6 938,150 - PfGW456L13_832 0.71 -1.0 938,150 - PfGW456L13_832 0.71 -0.6 938,150 - PfGW456L13_832 0.71 -1.2 938,150 - PfGW456L13_832 0.71 -0.4 938,150 - PfGW456L13_832 0.71 +0.6 938,150 - PfGW456L13_832 0.71 +0.5 938,150 - PfGW456L13_832 0.71 +0.3 938,150 - PfGW456L13_832 0.71 -0.6 938,150 - PfGW456L13_832 0.71 -0.4 938,150 - PfGW456L13_832 0.71 -0.0 938,191 + PfGW456L13_832 0.72 -0.0 938,191 + PfGW456L13_832 0.72 -2.9 938,191 + PfGW456L13_832 0.72 -0.3 938,191 + PfGW456L13_832 0.72 +0.4 938,191 + PfGW456L13_832 0.72 +0.6 938,191 + PfGW456L13_832 0.72 +1.0 938,191 + PfGW456L13_832 0.72 +0.3 938,191 + PfGW456L13_832 0.72 +0.2 938,191 + PfGW456L13_832 0.72 +0.3 938,191 + PfGW456L13_832 0.72 +0.1 938,192 - PfGW456L13_832 0.72 +0.1 938,192 - PfGW456L13_832 0.72 +1.6 938,192 - PfGW456L13_832 0.72 +0.8 938,192 - PfGW456L13_832 0.72 -0.3 938,192 - PfGW456L13_832 0.72 -2.1 938,192 - PfGW456L13_832 0.72 +1.6 938,410 + PfGW456L13_832 0.79 -0.2 938,411 - PfGW456L13_832 0.79 +0.3 938,411 - PfGW456L13_832 0.79 -0.5 938,606 - PfGW456L13_832 0.86 -0.3 938,666 + PfGW456L13_832 0.88 +0.4 938,667 - PfGW456L13_832 0.88 -0.3 938,670 - PfGW456L13_832 0.88 -0.1 938,783 + -2.0 938,784 - -1.2 938,867 - +0.7 938,893 + -0.7 938,893 + -0.6 938,893 + +1.1 938,893 + +0.1 938,893 + -1.2 938,894 - +0.4 938,894 - -0.5 938,894 - -0.4 939,066 + -0.5 939,066 + -0.9 939,174 + +0.1 939,174 + +0.0 939,174 + -1.1 939,174 + +1.1 939,174 + +0.0 939,174 + -0.3 939,174 + +0.4 939,174 + +1.2 939,175 - +1.2 939,175 - -0.2 939,238 + PfGW456L13_833 0.13 -0.8 939,238 + PfGW456L13_833 0.13 -0.9 939,238 + PfGW456L13_833 0.13 +1.5 939,238 + PfGW456L13_833 0.13 +0.8 939,239 - PfGW456L13_833 0.13 -0.4 939,239 - PfGW456L13_833 0.13 -0.2 939,239 - PfGW456L13_833 0.13 -1.7 939,239 - PfGW456L13_833 0.13 -0.3 939,239 - PfGW456L13_833 0.13 -1.9 939,240 - PfGW456L13_833 0.13 -0.5 939,241 + PfGW456L13_833 0.13 -0.2 939,241 + PfGW456L13_833 0.13 +0.8 939,242 - PfGW456L13_833 0.13 -1.3 939,284 + PfGW456L13_833 0.16 +1.2 939,284 + PfGW456L13_833 0.16 -0.8 939,284 + PfGW456L13_833 0.16 -0.4 939,284 + PfGW456L13_833 0.16 +0.2 939,284 + PfGW456L13_833 0.16 +0.6 939,284 + PfGW456L13_833 0.16 -0.6 939,285 - PfGW456L13_833 0.16 -1.0 939,285 - PfGW456L13_833 0.16 +1.0 939,285 - PfGW456L13_833 0.16 +0.4 939,285 - PfGW456L13_833 0.16 -1.3 939,319 - PfGW456L13_833 0.19 +0.2 939,319 - PfGW456L13_833 0.19 -1.1 939,319 - PfGW456L13_833 0.19 -0.1 939,329 + PfGW456L13_833 0.19 +0.9 939,329 + PfGW456L13_833 0.19 -0.3 939,375 + PfGW456L13_833 0.23 -1.1 939,375 + PfGW456L13_833 0.23 -0.7 939,376 - PfGW456L13_833 0.23 -0.6 939,376 - PfGW456L13_833 0.23 +0.9 939,539 + PfGW456L13_833 0.35 +0.6 939,540 - PfGW456L13_833 0.35 -0.4 939,540 - PfGW456L13_833 0.35 -1.4 939,540 - PfGW456L13_833 0.35 +1.2 939,540 - PfGW456L13_833 0.35 +0.2 939,656 + PfGW456L13_833 0.43 +2.1 939,656 + PfGW456L13_833 0.43 +0.6 939,656 + PfGW456L13_833 0.43 -0.2 939,656 + PfGW456L13_833 0.43 -0.1 939,656 + PfGW456L13_833 0.43 -0.1 939,657 - PfGW456L13_833 0.43 -0.6 939,657 - PfGW456L13_833 0.43 -1.0 939,657 - PfGW456L13_833 0.43 +0.0 939,764 + PfGW456L13_833 0.51 +1.1 939,945 - PfGW456L13_833 0.64 +0.5 940,035 + PfGW456L13_833 0.71 +1.0 940,035 + PfGW456L13_833 0.71 +0.4 940,035 + PfGW456L13_833 0.71 -0.1 940,035 + PfGW456L13_833 0.71 +0.1 940,036 - PfGW456L13_833 0.71 +1.3 940,036 - PfGW456L13_833 0.71 -0.5 940,251 + PfGW456L13_833 0.87 +0.0 940,251 + PfGW456L13_833 0.87 +0.2 940,252 - PfGW456L13_833 0.87 +0.4 940,415 + +2.6 940,415 + +1.6 940,415 + -0.3 940,415 + +1.0 940,415 + -0.1 940,415 + +0.1 940,416 - +0.0 940,416 - +0.2 940,418 + -0.0 940,419 - +1.3 940,419 - -0.1 940,419 - +0.7 940,482 + -2.0 940,482 + -0.5 940,482 + -1.1 940,482 + +1.5 940,482 + +0.3 940,483 - -1.7 940,483 - +0.9 940,483 - +0.6 940,483 - -0.7 940,498 + -0.7 940,498 + +1.0 940,557 + -0.5 940,557 + +0.8 940,558 - +0.0 940,558 - -1.1 940,558 - +0.4 940,558 - -0.0 940,566 - -0.1 940,566 - +0.1 940,570 + +1.3 940,570 + -0.9 940,570 + -0.6 940,570 + -0.2 940,570 + -1.9 940,570 + -0.8 940,571 - -0.1 940,571 - -0.8 940,571 - -0.7 940,571 - -0.7 940,571 - +0.3 940,571 - +0.3 940,571 - +0.1 940,571 - -1.2 940,571 - +0.7 940,571 - +0.6 940,571 - +0.4 940,589 + +0.4 940,589 + +2.4 940,589 + +3.8 940,589 + +0.4 940,590 - -0.2 940,590 - +0.4 940,590 - +0.2 940,590 - -0.9 940,601 + +0.1 940,601 + +0.4 940,602 - -2.4 940,605 + +0.3 940,605 + +0.4 940,606 - +0.2 940,626 + +0.6 940,636 + +0.3 940,636 + -0.9 940,636 + -0.7 940,636 + +0.0 940,769 + +0.2 940,769 + +1.0 940,770 - +0.5 940,770 - +0.6 941,105 + PfGW456L13_834 0.33 +0.5 941,219 + PfGW456L13_834 0.43 -0.5 941,220 - PfGW456L13_834 0.43 +0.9 941,220 - PfGW456L13_834 0.43 +0.9 941,313 + PfGW456L13_834 0.50 -0.1 941,314 - PfGW456L13_834 0.51 -0.8 941,354 - PfGW456L13_834 0.54 +0.9 941,366 + PfGW456L13_834 0.55 +0.4 941,366 + PfGW456L13_834 0.55 +0.0 941,366 + PfGW456L13_834 0.55 -0.6 941,379 - PfGW456L13_834 0.56 +0.6 941,379 - PfGW456L13_834 0.56 -0.1
Or see this region's nucleotide sequence