Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_77 and PfGW456L13_78 are separated by 156 nucleotides PfGW456L13_78 and PfGW456L13_79 overlap by 4 nucleotides PfGW456L13_79 and PfGW456L13_80 overlap by 4 nucleotides
PfGW456L13_77 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 87,862 to 89,241
_77
PfGW456L13_78 - ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component, at 89,398 to 90,186
_78
PfGW456L13_79 - ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component, at 90,183 to 91,142
_79
PfGW456L13_80 - ABC transporter (iron.B12.siderophore.hemin) , permease component, at 91,139 to 92,149
_80
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.274 kb on + strand at 89.274 kb on + strand at 89.274 kb on + strand at 89.275 kb on - strand at 89.335 kb on + strand at 89.336 kb on - strand at 89.336 kb on - strand at 90.034 kb on + strand, within PfGW456L13_78 at 90.034 kb on + strand, within PfGW456L13_78 at 90.035 kb on - strand, within PfGW456L13_78 at 90.035 kb on - strand, within PfGW456L13_78 at 90.055 kb on - strand, within PfGW456L13_78 at 90.478 kb on - strand, within PfGW456L13_79 at 90.537 kb on + strand, within PfGW456L13_79 at 90.538 kb on - strand, within PfGW456L13_79 at 90.538 kb on - strand, within PfGW456L13_79 at 90.600 kb on + strand, within PfGW456L13_79 at 90.600 kb on + strand, within PfGW456L13_79 at 90.600 kb on + strand, within PfGW456L13_79 at 90.600 kb on + strand, within PfGW456L13_79 at 90.601 kb on - strand, within PfGW456L13_79 at 90.601 kb on - strand, within PfGW456L13_79 at 90.663 kb on + strand, within PfGW456L13_79 at 90.663 kb on + strand, within PfGW456L13_79 at 90.663 kb on + strand, within PfGW456L13_79 at 90.663 kb on + strand, within PfGW456L13_79 at 90.664 kb on - strand, within PfGW456L13_79 at 90.664 kb on - strand, within PfGW456L13_79 at 90.795 kb on + strand, within PfGW456L13_79 at 90.839 kb on + strand, within PfGW456L13_79 at 91.068 kb on + strand at 91.068 kb on + strand at 91.069 kb on - strand at 91.069 kb on - strand at 91.069 kb on - strand at 91.267 kb on + strand, within PfGW456L13_80 at 91.268 kb on - strand, within PfGW456L13_80 at 91.268 kb on - strand, within PfGW456L13_80 at 91.315 kb on + strand, within PfGW456L13_80 at 91.315 kb on + strand, within PfGW456L13_80 at 91.316 kb on - strand, within PfGW456L13_80 at 91.316 kb on - strand, within PfGW456L13_80 at 91.316 kb on - strand, within PfGW456L13_80 at 91.316 kb on - strand, within PfGW456L13_80 at 91.779 kb on + strand, within PfGW456L13_80 at 91.780 kb on - strand, within PfGW456L13_80 at 91.793 kb on - strand, within PfGW456L13_80
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 89,274 + +0.2 89,274 + +0.8 89,274 + -0.0 89,275 - +0.1 89,335 + +1.3 89,336 - -0.4 89,336 - +0.8 90,034 + PfGW456L13_78 0.81 +0.4 90,034 + PfGW456L13_78 0.81 +1.1 90,035 - PfGW456L13_78 0.81 +0.7 90,035 - PfGW456L13_78 0.81 +0.2 90,055 - PfGW456L13_78 0.83 -0.4 90,478 - PfGW456L13_79 0.31 +0.4 90,537 + PfGW456L13_79 0.37 +1.1 90,538 - PfGW456L13_79 0.37 -1.0 90,538 - PfGW456L13_79 0.37 -1.8 90,600 + PfGW456L13_79 0.43 +1.1 90,600 + PfGW456L13_79 0.43 +0.3 90,600 + PfGW456L13_79 0.43 +0.4 90,600 + PfGW456L13_79 0.43 -0.2 90,601 - PfGW456L13_79 0.44 +2.1 90,601 - PfGW456L13_79 0.44 -0.4 90,663 + PfGW456L13_79 0.50 +0.6 90,663 + PfGW456L13_79 0.50 -0.1 90,663 + PfGW456L13_79 0.50 +0.1 90,663 + PfGW456L13_79 0.50 -1.0 90,664 - PfGW456L13_79 0.50 -0.2 90,664 - PfGW456L13_79 0.50 -0.4 90,795 + PfGW456L13_79 0.64 -0.2 90,839 + PfGW456L13_79 0.68 -0.7 91,068 + -0.7 91,068 + +0.1 91,069 - -1.4 91,069 - +0.6 91,069 - +0.8 91,267 + PfGW456L13_80 0.13 -1.3 91,268 - PfGW456L13_80 0.13 +0.6 91,268 - PfGW456L13_80 0.13 -0.2 91,315 + PfGW456L13_80 0.17 +0.2 91,315 + PfGW456L13_80 0.17 -0.5 91,316 - PfGW456L13_80 0.18 -0.5 91,316 - PfGW456L13_80 0.18 +0.9 91,316 - PfGW456L13_80 0.18 +0.3 91,316 - PfGW456L13_80 0.18 -1.6 91,779 + PfGW456L13_80 0.63 -0.4 91,780 - PfGW456L13_80 0.63 +0.6 91,793 - PfGW456L13_80 0.65 -1.4
Or see this region's nucleotide sequence