Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3342

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
3,753,046	+		PfGW456L13_3341	0.48	-1.8
3,753,047	-		PfGW456L13_3341	0.48	+0.7
3,753,082	+		PfGW456L13_3341	0.51	-1.2
3,753,082	+		PfGW456L13_3341	0.51	-0.6
3,753,082	+		PfGW456L13_3341	0.51	+1.5
3,753,082	+		PfGW456L13_3341	0.51	+0.9
3,753,082	+		PfGW456L13_3341	0.51	-1.3
3,753,083	-		PfGW456L13_3341	0.51	+0.2
3,753,083	-		PfGW456L13_3341	0.51	+2.2
3,753,083	-		PfGW456L13_3341	0.51	+0.3
3,753,169	+		PfGW456L13_3341	0.57	-0.8
3,753,170	-		PfGW456L13_3341	0.57	-0.1
3,753,170	-		PfGW456L13_3341	0.57	-0.7
3,753,646	+				+0.8
3,753,646	+				-1.0
3,753,647	-				+0.0
3,753,647	-				-0.7
3,753,673	+				+0.1
3,753,673	+				+0.4
3,753,674	-				-1.2
3,753,674	-				+1.2
3,753,698	+				+2.1
3,753,698	+				+0.3
3,753,699	-				-0.9
3,753,784	+				-0.5
3,753,784	+				-0.1
3,753,784	+				+0.5
3,753,785	-				-0.5
3,753,785	-				+0.3
3,753,790	+				-1.0
3,753,790	+				+1.0
3,753,790	+				-0.0
3,753,790	+				-1.3
3,753,790	+				+0.2
3,753,791	-				+0.1
3,753,884	+				-1.1
3,753,884	+				+0.5
3,753,884	+				+3.0
3,753,885	-				+0.7
3,753,928	+				-0.2
3,753,928	+				+1.2
3,753,928	+				-0.8
3,753,929	-				+0.9
3,753,929	-				+0.3
3,753,938	+				-0.3
3,753,939	-				+0.8
3,753,939	-				+0.6
3,753,944	-				+1.4
3,753,944	-				-1.0
3,753,944	-				+0.9
3,753,983	-				-0.7
3,754,066	+				-1.1
3,754,067	-				+0.5
3,754,091	-				+0.3
3,754,104	+				-0.7
3,754,146	+				+0.0
3,754,146	+				+0.5
3,754,146	+				+0.3
3,754,193	-		PfGW456L13_3342	0.11	-0.1
3,754,241	-		PfGW456L13_3342	0.14	-0.0
3,754,241	-		PfGW456L13_3342	0.14	-1.3
3,754,289	-		PfGW456L13_3342	0.17	-1.3
3,754,321	+		PfGW456L13_3342	0.18	-0.2
3,754,348	+		PfGW456L13_3342	0.20	+0.7
3,754,348	+		PfGW456L13_3342	0.20	-1.2
3,754,348	+		PfGW456L13_3342	0.20	+0.3
3,754,348	+		PfGW456L13_3342	0.20	-0.2
3,754,349	-		PfGW456L13_3342	0.20	+0.6
3,754,349	-		PfGW456L13_3342	0.20	+0.6
3,754,349	-		PfGW456L13_3342	0.20	+0.4
3,754,349	-		PfGW456L13_3342	0.20	+0.7
3,754,426	+		PfGW456L13_3342	0.24	-0.2
3,754,477	+		PfGW456L13_3342	0.27	-0.6
3,754,609	+		PfGW456L13_3342	0.34	+0.4
3,754,610	-		PfGW456L13_3342	0.34	-0.2
3,754,762	+		PfGW456L13_3342	0.42	+0.5
3,754,762	+		PfGW456L13_3342	0.42	+0.3
3,754,762	+		PfGW456L13_3342	0.42	+0.2
3,754,762	+		PfGW456L13_3342	0.42	+1.0
3,754,763	-		PfGW456L13_3342	0.42	+0.1
3,754,846	+		PfGW456L13_3342	0.47	-0.3
3,754,846	+		PfGW456L13_3342	0.47	-0.2
3,754,846	+		PfGW456L13_3342	0.47	+0.2
3,754,846	+		PfGW456L13_3342	0.47	+0.7
3,754,846	+		PfGW456L13_3342	0.47	+0.7
3,754,846	+		PfGW456L13_3342	0.47	-1.9
3,754,846	+		PfGW456L13_3342	0.47	+0.4
3,754,846	+		PfGW456L13_3342	0.47	-0.8
3,754,846	+		PfGW456L13_3342	0.47	+1.2
3,754,846	+		PfGW456L13_3342	0.47	-1.5
3,754,846	+		PfGW456L13_3342	0.47	+0.7
3,754,846	+		PfGW456L13_3342	0.47	+0.7
3,754,846	+		PfGW456L13_3342	0.47	-0.5
3,754,846	+		PfGW456L13_3342	0.47	+1.3
3,754,846	+		PfGW456L13_3342	0.47	-0.7
3,754,846	+		PfGW456L13_3342	0.47	-2.1
3,754,846	+		PfGW456L13_3342	0.47	-0.6
3,754,846	+		PfGW456L13_3342	0.47	+0.6
3,754,846	+		PfGW456L13_3342	0.47	-1.2
3,754,846	+		PfGW456L13_3342	0.47	-1.5
3,754,846	+		PfGW456L13_3342	0.47	+0.2
3,754,846	+		PfGW456L13_3342	0.47	+1.4
3,754,847	-		PfGW456L13_3342	0.47	-0.8
3,754,847	-		PfGW456L13_3342	0.47	-0.7
3,754,847	-		PfGW456L13_3342	0.47	-0.4
3,754,847	-		PfGW456L13_3342	0.47	-1.0
3,754,847	-		PfGW456L13_3342	0.47	-0.1
3,754,847	-		PfGW456L13_3342	0.47	-0.2
3,754,847	-		PfGW456L13_3342	0.47	+0.6
3,754,847	-				+0.5
3,754,847	-		PfGW456L13_3342	0.47	-1.8
3,754,847	-		PfGW456L13_3342	0.47	-0.1
3,754,847	-		PfGW456L13_3342	0.47	+0.1
3,754,847	-		PfGW456L13_3342	0.47	-1.3
3,754,847	-		PfGW456L13_3342	0.47	+0.8
3,754,847	-		PfGW456L13_3342	0.47	+0.8
3,754,847	-		PfGW456L13_3342	0.47	-1.4
3,754,847	-		PfGW456L13_3342	0.47	+0.3
3,754,847	-		PfGW456L13_3342	0.47	-0.5
3,754,847	-		PfGW456L13_3342	0.47	-0.7
3,754,847	-		PfGW456L13_3342	0.47	+0.2
3,754,847	-		PfGW456L13_3342	0.47	-0.8
3,754,847	-		PfGW456L13_3342	0.47	-0.6
3,754,847	-		PfGW456L13_3342	0.47	-0.0
3,754,847	-		PfGW456L13_3342	0.47	+0.7
3,754,847	-				+0.5
3,754,847	-		PfGW456L13_3342	0.47	+0.3
3,754,847	-		PfGW456L13_3342	0.47	+0.4
3,754,847	-		PfGW456L13_3342	0.47	+0.7
3,754,847	-		PfGW456L13_3342	0.47	-0.5
3,754,847	-		PfGW456L13_3342	0.47	-1.5
3,754,847	-		PfGW456L13_3342	0.47	-0.2
3,754,847	-		PfGW456L13_3342	0.47	-1.4
3,754,847	-		PfGW456L13_3342	0.47	+1.7
3,754,849	-		PfGW456L13_3342	0.47	+1.4
3,755,086	+		PfGW456L13_3342	0.60	+0.6
3,755,086	+		PfGW456L13_3342	0.60	+1.7
3,755,086	+		PfGW456L13_3342	0.60	+0.1
3,755,086	+		PfGW456L13_3342	0.60	+0.1
3,755,086	+		PfGW456L13_3342	0.60	+0.6
3,755,086	+		PfGW456L13_3342	0.60	-0.1
3,755,086	+		PfGW456L13_3342	0.60	-3.1
3,755,086	+		PfGW456L13_3342	0.60	-0.4
3,755,086	+		PfGW456L13_3342	0.60	+0.6
3,755,087	-		PfGW456L13_3342	0.60	+1.1
3,755,087	-		PfGW456L13_3342	0.60	-0.2
3,755,087	-		PfGW456L13_3342	0.60	-0.0
3,755,087	-		PfGW456L13_3342	0.60	+0.1
3,755,087	-		PfGW456L13_3342	0.60	-2.1
3,755,087	-		PfGW456L13_3342	0.60	-0.2
3,755,090	-		PfGW456L13_3342	0.60	-0.9
3,755,155	+		PfGW456L13_3342	0.64	+0.6
3,755,156	-		PfGW456L13_3342	0.64	+0.5
3,755,185	-		PfGW456L13_3342	0.65	+0.4
3,755,374	+		PfGW456L13_3342	0.76	+1.2
3,755,374	+		PfGW456L13_3342	0.76	-1.5
3,755,374	+		PfGW456L13_3342	0.76	+0.5
3,755,374	+		PfGW456L13_3342	0.76	+0.4
3,755,374	+		PfGW456L13_3342	0.76	+0.3
3,755,374	+		PfGW456L13_3342	0.76	+0.1
3,755,375	-		PfGW456L13_3342	0.76	-0.6
3,755,375	-		PfGW456L13_3342	0.76	+0.2
3,755,375	-		PfGW456L13_3342	0.76	+0.1
3,755,437	+		PfGW456L13_3342	0.79	+0.5
3,755,438	-		PfGW456L13_3342	0.79	+0.1
3,755,438	-		PfGW456L13_3342	0.79	+0.3
3,755,438	-		PfGW456L13_3342	0.79	+0.5
3,755,438	-		PfGW456L13_3342	0.79	-1.3
3,755,438	-		PfGW456L13_3342	0.79	+0.7
3,755,438	-		PfGW456L13_3342	0.79	+1.0
3,755,524	+		PfGW456L13_3342	0.84	+0.6
3,755,524	+		PfGW456L13_3342	0.84	-1.0
3,755,524	+		PfGW456L13_3342	0.84	+0.1
3,755,567	-		PfGW456L13_3342	0.86	-0.0
3,755,686	+				+0.4
3,755,686	+				+1.1
3,755,686	+				+0.8
3,755,686	+				-0.9
3,755,686	+				+0.8
3,755,687	-				+0.5
3,755,687	-				+0.8
3,755,687	-				+0.4
3,755,705	-				-0.4
3,755,713	+				+0.9
3,755,764	+				+1.1
3,755,764	+				+0.0
3,755,905	-				-0.2
3,755,905	-				+0.1
3,755,905	-				-0.1
3,755,905	-				-0.2
3,755,906	+				-3.7
3,755,906	+				-0.1
3,755,949	+				-0.7
3,755,950	-				+0.1
3,756,066	+		PfGW456L13_3343	0.14	+0.3
3,756,066	+		PfGW456L13_3343	0.14	+1.3
3,756,067	-		PfGW456L13_3343	0.14	+1.0
3,756,067	-		PfGW456L13_3343	0.14	+1.0
3,756,067	-		PfGW456L13_3343	0.14	-1.3
3,756,067	-		PfGW456L13_3343	0.14	+0.5
3,756,168	+		PfGW456L13_3343	0.19	-0.1
3,756,267	+		PfGW456L13_3343	0.25	+1.8
3,756,268	-		PfGW456L13_3343	0.25	+0.7
3,756,279	+		PfGW456L13_3343	0.25	+1.7
3,756,280	-		PfGW456L13_3343	0.25	+0.4
3,756,459	+		PfGW456L13_3343	0.35	+1.3
3,756,459	+		PfGW456L13_3343	0.35	+0.6
3,756,459	+		PfGW456L13_3343	0.35	+0.7
3,756,579	+		PfGW456L13_3343	0.42	-1.3
3,756,580	-		PfGW456L13_3343	0.42	-0.6
3,756,580	-		PfGW456L13_3343	0.42	+0.0
3,756,634	-		PfGW456L13_3343	0.45	+0.9
3,756,672	+		PfGW456L13_3343	0.47	+0.8
3,756,673	-		PfGW456L13_3343	0.47	-0.6
3,756,673	-		PfGW456L13_3343	0.47	+0.7
3,756,754	+		PfGW456L13_3343	0.51	-1.1
3,756,754	+		PfGW456L13_3343	0.51	-2.4
3,756,754	+		PfGW456L13_3343	0.51	+0.3