Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2990

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
3,334,007	+		PfGW456L13_2989	0.30	-0.6
3,334,078	+		PfGW456L13_2989	0.37	-0.2
3,334,078	+				+1.6
3,334,079	-		PfGW456L13_2989	0.38	+0.5
3,334,129	+		PfGW456L13_2989	0.43	-0.3
3,334,129	+		PfGW456L13_2989	0.43	-1.7
3,334,129	+		PfGW456L13_2989	0.43	+0.3
3,334,130	-		PfGW456L13_2989	0.43	-0.4
3,334,130	-		PfGW456L13_2989	0.43	+1.0
3,334,130	-		PfGW456L13_2989	0.43	-2.2
3,334,133	+		PfGW456L13_2989	0.43	+0.2
3,334,133	+		PfGW456L13_2989	0.43	+0.1
3,334,134	-		PfGW456L13_2989	0.43	+0.7
3,334,134	-		PfGW456L13_2989	0.43	-0.6
3,334,134	-		PfGW456L13_2989	0.43	+0.1
3,334,427	+		PfGW456L13_2989	0.74	-1.2
3,334,428	-		PfGW456L13_2989	0.74	-0.2
3,334,428	-		PfGW456L13_2989	0.74	+0.6
3,334,489	-		PfGW456L13_2989	0.80	-1.1
3,334,489	-		PfGW456L13_2989	0.80	+0.9
3,334,489	-		PfGW456L13_2989	0.80	+0.7
3,334,663	+				+0.6
3,334,663	+				+0.6
3,334,663	+				+1.0
3,334,663	+				-0.0
3,334,663	+				+1.5
3,334,663	+				+1.1
3,334,664	-				-0.8
3,334,672	+				-1.0
3,334,676	+				+0.0
3,334,676	+				-0.3
3,334,676	+				+0.4
3,334,676	+				+0.8
3,334,676	+				-0.0
3,334,677	-				-2.4
3,334,677	-				+0.8
3,334,677	-				+1.5
3,334,677	-				+1.4
3,334,677	-				+1.0
3,334,679	+				-0.0
3,334,679	+				-0.4
3,334,680	-				-0.1
3,334,680	-				-0.0
3,334,680	-				-0.8
3,334,714	+				+1.4
3,334,714	+				+0.2
3,334,714	+				-0.1
3,334,731	+				+0.3
3,334,731	+				-0.8
3,334,731	+				-0.1
3,334,731	+				+0.0
3,334,732	-				+1.5
3,334,770	+				+2.2
3,334,771	-				+0.2
3,334,820	-				+1.3
3,334,820	-				-0.6
3,334,832	+				+0.7
3,334,832	+				-0.2
3,334,833	-				+0.3
3,334,881	+				+0.0
3,334,882	-				-0.5
3,334,882	-				+0.1
3,335,106	+		PfGW456L13_2990	0.51	+1.1
3,335,158	+		PfGW456L13_2990	0.61	-0.4
3,335,158	+		PfGW456L13_2990	0.61	+0.3
3,335,159	-		PfGW456L13_2990	0.61	+0.9
3,335,159	-		PfGW456L13_2990	0.61	-0.0
3,335,159	-		PfGW456L13_2990	0.61	-1.2
3,335,159	-		PfGW456L13_2990	0.61	-0.3
3,335,207	+		PfGW456L13_2990	0.70	-0.2
3,335,207	+		PfGW456L13_2990	0.70	-1.0
3,335,208	-		PfGW456L13_2990	0.70	-1.0
3,335,208	-		PfGW456L13_2990	0.70	-1.6
3,335,208	-		PfGW456L13_2990	0.70	-1.4
3,335,208	-		PfGW456L13_2990	0.70	+0.8
3,335,208	-		PfGW456L13_2990	0.70	+0.2
3,335,258	+		PfGW456L13_2990	0.79	-0.9
3,335,258	+		PfGW456L13_2990	0.79	+0.7
3,335,258	+		PfGW456L13_2990	0.79	+0.9
3,335,258	+		PfGW456L13_2990	0.79	+1.6
3,335,259	-		PfGW456L13_2990	0.79	-0.3
3,335,259	-		PfGW456L13_2990	0.79	+1.6
3,335,259	-		PfGW456L13_2990	0.79	+0.9
3,335,259	-		PfGW456L13_2990	0.79	+0.8
3,335,325	+				-0.6
3,335,325	+				+0.4
3,335,325	+				-0.1
3,335,325	+				-0.7
3,335,325	+				+0.3
3,335,325	+				+1.5
3,335,325	+				-0.2
3,335,325	+				-0.1
3,335,326	-				+0.4
3,335,326	-				+0.6
3,335,326	-				-0.6
3,335,326	-				-2.0
3,335,326	-				-0.0
3,335,326	-				-0.4
3,335,327	+				-0.9
3,335,327	+				-0.1
3,335,327	+				+0.4
3,335,327	+				-1.8
3,335,328	-				+1.1
3,335,328	-				-1.7
3,335,328	-				+0.8
3,335,328	-				-0.4
3,335,328	-				+0.9
3,335,328	-				-0.4
3,335,328	-				-2.0
3,335,328	-				+0.8
3,335,328	-				+0.1
3,335,347	+				+0.1
3,335,347	+				-0.0
3,335,347	+				+0.2
3,335,347	+				-1.4
3,335,347	+				-0.6
3,335,347	+				-0.0
3,335,347	+				-1.1
3,335,347	+				+0.7
3,335,347	+				+0.3
3,335,347	+				-2.9
3,335,348	-				-0.6
3,335,348	-				-0.6
3,335,348	-				+2.9
3,335,348	-				+0.3
3,335,348	-				+0.8
3,335,348	-				-0.2
3,335,348	-				-0.2
3,335,348	-				-0.4
3,335,348	-				-0.2
3,335,351	+				-0.2
3,335,351	+				+0.5
3,335,351	+				-2.7
3,335,351	+				-1.4
3,335,351	+				+1.2
3,335,352	-				+2.4
3,335,352	-				+0.2
3,335,352	-				-0.1
3,335,352	-				-0.4
3,335,352	-				-0.3
3,335,352	-				+0.6
3,335,352	-				+0.4
3,335,352	-				-1.1
3,335,352	-				+0.6
3,335,352	-				+0.4
3,335,352	-				-1.9
3,335,354	+				-0.2
3,335,354	+				+0.6
3,335,355	-				+1.9
3,335,355	-				-0.0
3,335,355	-				-0.5
3,335,383	+				+0.1
3,335,383	+				-0.3
3,335,383	+				+0.2
3,335,384	-				-0.9
3,335,384	-				+0.2
3,335,384	-				+1.2
3,335,384	-				-1.4
3,335,384	-				+0.1
3,335,409	+				+1.3
3,335,410	-				-0.2
3,335,413	+				-0.2
3,335,413	+				-0.4
3,335,458	-				+0.2
3,335,458	-				+0.1
3,335,476	+				+0.1
3,335,567	+		PfGW456L13_2991	0.43	-0.8
3,335,567	+		PfGW456L13_2991	0.43	-0.3
3,335,567	+		PfGW456L13_2991	0.43	+0.2
3,335,567	+		PfGW456L13_2991	0.43	+1.1
3,335,567	+		PfGW456L13_2991	0.43	+0.8
3,335,567	+		PfGW456L13_2991	0.43	-0.0
3,335,567	+		PfGW456L13_2991	0.43	-0.5
3,335,567	+		PfGW456L13_2991	0.43	-0.8
3,335,567	+		PfGW456L13_2991	0.43	+0.9
3,335,567	+		PfGW456L13_2991	0.43	-0.7
3,335,567	+		PfGW456L13_2991	0.43	-0.6
3,335,568	-		PfGW456L13_2991	0.43	+0.2
3,335,568	-		PfGW456L13_2991	0.43	+1.6
3,335,568	-		PfGW456L13_2991	0.43	-0.3
3,335,568	-		PfGW456L13_2991	0.43	+0.8
3,335,568	-		PfGW456L13_2991	0.43	-0.2
3,335,568	-		PfGW456L13_2991	0.43	-2.0
3,335,568	-		PfGW456L13_2991	0.43	-0.8
3,335,568	-		PfGW456L13_2991	0.43	+0.3
3,335,568	-		PfGW456L13_2991	0.43	+0.8
3,335,635	+		PfGW456L13_2991	0.68	-1.0
3,335,635	+		PfGW456L13_2991	0.68	+0.1
3,335,635	+		PfGW456L13_2991	0.68	+0.3
3,335,636	-		PfGW456L13_2991	0.68	-0.4
3,335,636	-		PfGW456L13_2991	0.68	-0.4
3,335,764	+				-0.3
3,335,764	+				-0.2
3,335,764	+				-0.0
3,335,764	+				+0.4
3,335,764	+				+0.2
3,335,764	+				+0.2
3,335,765	-				-0.5
3,335,765	-				+0.3
3,335,765	-				-2.4
3,335,765	-				+0.3
3,335,765	-				+1.0
3,335,771	+				-0.4
3,335,772	-				-0.2
3,335,827	+		PfGW456L13_2992	0.43	-1.4
3,335,827	+		PfGW456L13_2992	0.43	-0.5
3,335,828	-		PfGW456L13_2992	0.44	-0.2
3,335,919	+				+0.1
3,336,146	+				-1.8
3,336,146	+				+0.4
3,336,146	+				+0.2
3,336,146	+				+0.6
3,336,146	+				-0.7
3,336,147	-				-0.3
3,336,147	-				-0.4
3,336,147	-				-1.2
3,336,147	-				+0.4
3,336,159	+				-0.2