Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2901

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
3,242,016	+		PfGW456L13_2900	0.75	+0.4
3,242,016	+		PfGW456L13_2900	0.75	-0.1
3,242,016	+		PfGW456L13_2900	0.75	+0.7
3,242,016	+		PfGW456L13_2900	0.75	+0.4
3,242,016	+		PfGW456L13_2900	0.75	-0.2
3,242,016	+		PfGW456L13_2900	0.75	-0.2
3,242,017	-		PfGW456L13_2900	0.75	-1.7
3,242,017	-		PfGW456L13_2900	0.75	+0.3
3,242,017	-		PfGW456L13_2900	0.75	+0.6
3,242,017	-		PfGW456L13_2900	0.75	+0.1
3,242,017	-		PfGW456L13_2900	0.75	+0.9
3,242,017	-		PfGW456L13_2900	0.75	+0.7
3,242,217	+		PfGW456L13_2900	0.82	+0.0
3,242,217	+		PfGW456L13_2900	0.82	-0.1
3,242,218	-		PfGW456L13_2900	0.82	+0.2
3,242,672	-				-0.3
3,242,720	+				-0.5
3,242,720	+				+0.6
3,242,721	-				-1.4
3,242,752	+				+1.4
3,242,753	-				+0.4
3,242,754	+				+0.3
3,242,754	+				-1.3
3,242,754	+				-0.0
3,242,754	+				+2.5
3,242,755	-				-0.6
3,242,755	-				-0.4
3,242,755	-				+0.2
3,242,755	-				+0.1
3,242,778	-				-0.4
3,242,897	+				-0.5
3,242,897	+				+0.3
3,242,922	+				+0.6
3,242,922	+				+0.4
3,242,922	+				+0.7
3,242,923	-				+1.3
3,242,923	-				-0.8
3,242,923	-				+0.4
3,242,930	+				+0.4
3,242,973	+				+0.6
3,242,974	-				-0.3
3,242,974	-				+1.3
3,242,974	-				+0.2
3,242,976	-				-2.1
3,242,976	-				+0.3
3,243,038	+				-0.3
3,243,039	-				+1.4
3,243,039	-				-1.0
3,243,089	+				+0.2
3,243,089	+				-1.0
3,243,119	+				-1.1
3,243,119	+				-0.1
3,243,145	+				+1.1
3,243,146	-				+0.1
3,243,146	-				-1.5
3,243,174	+				-1.0
3,243,422	+		PfGW456L13_2901	0.24	+0.5
3,243,422	+		PfGW456L13_2901	0.24	+0.6
3,243,422	+		PfGW456L13_2901	0.24	-0.5
3,243,422	+		PfGW456L13_2901	0.24	-0.3
3,243,422	+		PfGW456L13_2901	0.24	-0.2
3,243,423	-		PfGW456L13_2901	0.24	+0.5
3,243,425	+		PfGW456L13_2901	0.24	+0.5
3,243,425	+		PfGW456L13_2901	0.24	-1.2
3,243,425	+		PfGW456L13_2901	0.24	+0.4
3,243,425	+		PfGW456L13_2901	0.24	+0.1
3,243,425	+		PfGW456L13_2901	0.24	-2.4
3,243,425	+		PfGW456L13_2901	0.24	-2.6
3,243,425	+		PfGW456L13_2901	0.24	-1.4
3,243,425	+		PfGW456L13_2901	0.24	-0.2
3,243,425	+		PfGW456L13_2901	0.24	+1.5
3,243,425	+		PfGW456L13_2901	0.24	-1.4
3,243,425	+		PfGW456L13_2901	0.24	+1.5
3,243,425	+		PfGW456L13_2901	0.24	-0.4
3,243,426	-		PfGW456L13_2901	0.24	+0.6
3,243,426	-		PfGW456L13_2901	0.24	+1.0
3,243,426	-		PfGW456L13_2901	0.24	+0.8
3,243,426	-		PfGW456L13_2901	0.24	-0.7
3,243,426	-		PfGW456L13_2901	0.24	-1.6
3,243,426	-		PfGW456L13_2901	0.24	-0.6
3,243,426	-		PfGW456L13_2901	0.24	+0.1
3,243,426	-		PfGW456L13_2901	0.24	-0.1
3,243,426	-		PfGW456L13_2901	0.24	-0.7
3,243,743	+		PfGW456L13_2901	0.43	+0.0
3,243,743	+		PfGW456L13_2901	0.43	-0.5
3,243,744	-		PfGW456L13_2901	0.43	-0.9
3,243,744	-		PfGW456L13_2901	0.43	-0.3
3,243,744	-		PfGW456L13_2901	0.43	-0.3
3,243,744	-		PfGW456L13_2901	0.43	-0.3
3,243,744	-		PfGW456L13_2901	0.43	+0.6
3,243,949	+		PfGW456L13_2901	0.55	+1.0
3,243,950	-		PfGW456L13_2901	0.55	+0.4
3,243,968	+		PfGW456L13_2901	0.56	-0.1
3,243,968	+		PfGW456L13_2901	0.56	-1.7
3,243,969	-		PfGW456L13_2901	0.56	+0.9
3,243,969	-		PfGW456L13_2901	0.56	-0.3
3,243,969	-		PfGW456L13_2901	0.56	-0.2
3,243,986	+		PfGW456L13_2901	0.57	-0.9
3,243,986	+		PfGW456L13_2901	0.57	+0.1
3,244,039	+		PfGW456L13_2901	0.60	-2.0
3,244,039	+		PfGW456L13_2901	0.60	-0.1
3,244,040	-		PfGW456L13_2901	0.60	+0.4
3,244,169	+		PfGW456L13_2901	0.67	-0.6
3,244,199	+		PfGW456L13_2901	0.69	-0.6
3,244,199	+		PfGW456L13_2901	0.69	-0.4
3,244,199	+		PfGW456L13_2901	0.69	+0.8
3,244,200	-		PfGW456L13_2901	0.69	+0.1
3,244,200	-		PfGW456L13_2901	0.69	-0.7
3,244,290	-		PfGW456L13_2901	0.74	+0.0
3,244,334	+		PfGW456L13_2901	0.77	-0.8
3,244,335	-		PfGW456L13_2901	0.77	+0.8
3,244,335	-		PfGW456L13_2901	0.77	-1.1
3,244,369	+		PfGW456L13_2901	0.79	-3.9
3,244,369	+		PfGW456L13_2901	0.79	+0.6
3,244,369	+		PfGW456L13_2901	0.79	-0.3
3,244,369	+		PfGW456L13_2901	0.79	+1.8
3,244,461	-		PfGW456L13_2901	0.84	-2.1
3,244,535	+		PfGW456L13_2901	0.89	+0.1
3,244,535	+		PfGW456L13_2901	0.89	-1.3
3,244,539	+		PfGW456L13_2901	0.89	+0.0
3,244,539	+		PfGW456L13_2901	0.89	-0.5
3,244,539	+		PfGW456L13_2901	0.89	+1.3
3,244,540	-		PfGW456L13_2901	0.89	+0.6
3,244,540	-		PfGW456L13_2901	0.89	-0.2
3,244,540	-		PfGW456L13_2901	0.89	+0.2
3,244,581	-				-0.2
3,244,642	+				+0.0
3,244,642	+				-0.6
3,244,642	+				-0.2
3,244,642	+				-1.3
3,244,642	+				-0.2
3,244,643	-				+1.0
3,244,643	-				+0.9
3,244,643	-				+0.3
3,244,643	-				-0.0
3,244,643	-				+0.2
3,244,724	+				-0.8
3,244,724	+				-1.0
3,244,724	+				+0.7
3,244,725	-				+0.1
3,244,742	-				-0.5
3,244,822	-				+0.2
3,244,829	+				+0.6
3,244,829	+				+2.8
3,244,829	+				+0.1
3,244,829	+				-0.0
3,244,829	+				-0.4
3,244,829	+				+0.2
3,244,829	+				+0.1
3,244,829	+				-0.2
3,244,830	-				+1.3
3,244,830	-				-0.5
3,244,932	-				-0.1
3,244,936	+				+0.5
3,244,936	+				-0.7
3,244,937	-				+0.9
3,244,937	-				+0.1
3,244,937	-				-0.1
3,244,937	-				-2.3
3,244,937	-				+1.1
3,244,944	+				+0.3
3,245,024	+		PfGW456L13_2902	0.10	+0.2
3,245,024	+		PfGW456L13_2902	0.10	+0.7
3,245,024	+		PfGW456L13_2902	0.10	-1.7
3,245,025	-		PfGW456L13_2902	0.10	-0.4
3,245,025	-		PfGW456L13_2902	0.10	-0.6
3,245,025	-		PfGW456L13_2902	0.10	-0.2
3,245,025	-		PfGW456L13_2902	0.10	-2.0
3,245,057	+		PfGW456L13_2902	0.16	-0.6
3,245,057	+		PfGW456L13_2902	0.16	-0.7
3,245,061	+		PfGW456L13_2902	0.16	+1.2
3,245,062	-		PfGW456L13_2902	0.17	-0.0
3,245,062	-		PfGW456L13_2902	0.17	-0.1
3,245,070	+		PfGW456L13_2902	0.18	-0.8
3,245,071	-		PfGW456L13_2902	0.18	+0.7
3,245,082	+		PfGW456L13_2902	0.20	+0.6
3,245,083	-		PfGW456L13_2902	0.20	-0.7
3,245,163	+		PfGW456L13_2902	0.33	+0.1
3,245,163	+		PfGW456L13_2902	0.33	+0.4
3,245,163	+		PfGW456L13_2902	0.33	+0.3
3,245,163	+		PfGW456L13_2902	0.33	+0.8
3,245,193	+		PfGW456L13_2902	0.38	-0.7
3,245,194	-		PfGW456L13_2902	0.38	-1.0
3,245,274	+		PfGW456L13_2902	0.51	-0.1
3,245,274	+		PfGW456L13_2902	0.51	+0.4
3,245,274	+		PfGW456L13_2902	0.51	+0.0
3,245,275	-		PfGW456L13_2902	0.52	-0.4
3,245,275	-		PfGW456L13_2902	0.52	+0.1
3,245,275	-		PfGW456L13_2902	0.52	-1.0
3,245,275	-		PfGW456L13_2902	0.52	+0.6
3,245,275	-		PfGW456L13_2902	0.52	+0.9
3,245,275	-		PfGW456L13_2902	0.52	+0.2
3,245,275	-		PfGW456L13_2902	0.52	+0.0
3,245,286	-		PfGW456L13_2902	0.53	+0.1
3,245,343	+		PfGW456L13_2902	0.63	-0.0
3,245,343	+		PfGW456L13_2902	0.63	+1.4
3,245,343	+		PfGW456L13_2902	0.63	+0.3
3,245,391	+		PfGW456L13_2902	0.71	+0.7
3,245,391	+		PfGW456L13_2902	0.71	+0.4
3,245,391	+		PfGW456L13_2902	0.71	+0.6
3,245,391	+		PfGW456L13_2902	0.71	-0.8
3,245,391	+		PfGW456L13_2902	0.71	-0.1
3,245,391	+		PfGW456L13_2902	0.71	-0.3
3,245,391	+		PfGW456L13_2902	0.71	-0.2
3,245,391	+		PfGW456L13_2902	0.71	-0.2
3,245,391	+		PfGW456L13_2902	0.71	-0.7
3,245,391	+		PfGW456L13_2902	0.71	-1.6
3,245,391	+		PfGW456L13_2902	0.71	+0.4
3,245,391	+		PfGW456L13_2902	0.71	-0.8
3,245,391	+		PfGW456L13_2902	0.71	-1.5
3,245,392	-		PfGW456L13_2902	0.71	+0.8
3,245,392	-		PfGW456L13_2902	0.71	+0.3
3,245,392	-		PfGW456L13_2902	0.71	-0.2
3,245,392	-		PfGW456L13_2902	0.71	-0.3
3,245,392	-		PfGW456L13_2902	0.71	-0.8
3,245,392	-		PfGW456L13_2902	0.71	-0.3
3,245,392	-		PfGW456L13_2902	0.71	-2.7
3,245,392	-		PfGW456L13_2902	0.71	+0.2
3,245,392	-		PfGW456L13_2902	0.71	+0.7
3,245,392	-		PfGW456L13_2902	0.71	-0.7
3,245,392	-		PfGW456L13_2902	0.71	+0.7
3,245,392	-		PfGW456L13_2902	0.71	-0.3
3,245,400	+		PfGW456L13_2902	0.72	+0.3
3,245,400	+		PfGW456L13_2902	0.72	-0.1
3,245,401	-		PfGW456L13_2902	0.72	+0.6
3,245,410	-		PfGW456L13_2902	0.74	+0.1
3,245,441	+		PfGW456L13_2902	0.79	+0.8
3,245,442	-		PfGW456L13_2902	0.79	-0.9
3,245,442	-		PfGW456L13_2902	0.79	-0.8
3,245,442	-		PfGW456L13_2902	0.79	-1.4
3,245,442	-		PfGW456L13_2902	0.79	-0.6
3,245,445	+		PfGW456L13_2902	0.80	-0.5
3,245,445	+		PfGW456L13_2902	0.80	-0.4
3,245,445	+		PfGW456L13_2902	0.80	+0.5
3,245,446	-		PfGW456L13_2902	0.80	+0.9
3,245,453	+		PfGW456L13_2902	0.81	+0.1
3,245,505	+		PfGW456L13_2902	0.90	-1.6
3,245,505	+		PfGW456L13_2902	0.90	-0.1
3,245,505	+		PfGW456L13_2902	0.90	+0.3
3,245,505	+		PfGW456L13_2902	0.90	+0.6
3,245,506	-		PfGW456L13_2902	0.90	+0.3
3,245,519	+				-0.3
3,245,519	+				-0.9
3,245,519	+				-2.0
3,245,520	-				+0.5
3,245,520	-				+0.1
3,245,520	-				-0.9
3,245,553	-				+0.1
3,245,566	-				-0.7
3,245,566	-				-2.7
3,245,619	+				-1.1
3,245,620	-				-1.1
3,245,620	-				-0.5
3,245,698	+				-2.0