Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2099

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2097 and PfGW456L13_2098 overlap by 14 nucleotidesPfGW456L13_2098 and PfGW456L13_2099 are separated by 24 nucleotidesPfGW456L13_2099 and PfGW456L13_2100 are separated by 54 nucleotidesPfGW456L13_2100 and PfGW456L13_2101 are separated by 105 nucleotides PfGW456L13_2097 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 2,304,491 to 2,305,453 _2097 PfGW456L13_2098 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 2,305,440 to 2,306,102 _2098 PfGW456L13_2099 - Periplasmic serine proteases (ClpP class), at 2,306,127 to 2,307,116 _2099 PfGW456L13_2100 - FIG146278: Maf/YceF/YhdE family protein, at 2,307,171 to 2,307,749 _2100 PfGW456L13_2101 - COG1399 protein, clustered with ribosomal protein L32p, at 2,307,855 to 2,308,382 _2101 Position (kb) 2306 2307 2308Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2305.244 kb on - strand, within PfGW456L13_2097at 2305.283 kb on + strand, within PfGW456L13_2097at 2305.283 kb on + strand, within PfGW456L13_2097at 2305.284 kb on - strand, within PfGW456L13_2097at 2305.349 kb on + strand, within PfGW456L13_2097at 2305.349 kb on + strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.350 kb on - strand, within PfGW456L13_2097at 2305.455 kb on + strandat 2305.455 kb on + strandat 2305.456 kb on - strandat 2305.665 kb on + strand, within PfGW456L13_2098at 2305.665 kb on + strand, within PfGW456L13_2098at 2305.666 kb on - strand, within PfGW456L13_2098at 2305.666 kb on - strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.677 kb on + strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.678 kb on - strand, within PfGW456L13_2098at 2305.755 kb on + strand, within PfGW456L13_2098at 2305.755 kb on + strand, within PfGW456L13_2098at 2305.830 kb on + strand, within PfGW456L13_2098at 2305.830 kb on + strand, within PfGW456L13_2098at 2305.831 kb on - strand, within PfGW456L13_2098at 2306.004 kb on + strand, within PfGW456L13_2098at 2306.004 kb on + strand, within PfGW456L13_2098at 2306.005 kb on - strand, within PfGW456L13_2098at 2306.005 kb on - strand, within PfGW456L13_2098at 2306.005 kb on - strand, within PfGW456L13_2098at 2306.037 kb on + strandat 2306.037 kb on + strandat 2306.037 kb on + strandat 2306.037 kb on + strandat 2306.038 kb on - strandat 2306.038 kb on - strandat 2306.221 kb on + strandat 2306.221 kb on + strandat 2306.222 kb on - strandat 2306.222 kb on - strandat 2306.222 kb on - strandat 2306.254 kb on + strand, within PfGW456L13_2099at 2306.254 kb on + strand, within PfGW456L13_2099at 2306.280 kb on + strand, within PfGW456L13_2099at 2306.281 kb on - strand, within PfGW456L13_2099at 2306.281 kb on - strand, within PfGW456L13_2099at 2306.281 kb on - strand, within PfGW456L13_2099at 2306.352 kb on + strand, within PfGW456L13_2099at 2306.352 kb on + strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.353 kb on - strand, within PfGW456L13_2099at 2306.414 kb on + strand, within PfGW456L13_2099at 2306.415 kb on - strand, within PfGW456L13_2099at 2306.511 kb on + strand, within PfGW456L13_2099at 2306.517 kb on + strand, within PfGW456L13_2099at 2306.517 kb on + strand, within PfGW456L13_2099at 2306.517 kb on + strand, within PfGW456L13_2099at 2306.517 kb on + strand, within PfGW456L13_2099at 2306.517 kb on + strand, within PfGW456L13_2099at 2306.518 kb on - strand, within PfGW456L13_2099at 2306.565 kb on + strand, within PfGW456L13_2099at 2306.565 kb on + strand, within PfGW456L13_2099at 2306.566 kb on - strand, within PfGW456L13_2099at 2306.566 kb on - strand, within PfGW456L13_2099at 2306.566 kb on - strand, within PfGW456L13_2099at 2306.601 kb on + strand, within PfGW456L13_2099at 2306.601 kb on + strand, within PfGW456L13_2099at 2306.601 kb on + strand, within PfGW456L13_2099at 2306.602 kb on - strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.604 kb on + strand, within PfGW456L13_2099at 2306.605 kb on - strand, within PfGW456L13_2099at 2306.605 kb on - strand, within PfGW456L13_2099at 2306.605 kb on - strand, within PfGW456L13_2099at 2306.631 kb on + strand, within PfGW456L13_2099at 2306.726 kb on + strandat 2306.726 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.730 kb on + strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.731 kb on - strand, within PfGW456L13_2099at 2306.840 kb on + strand, within PfGW456L13_2099at 2306.841 kb on - strand, within PfGW456L13_2099at 2306.841 kb on - strand, within PfGW456L13_2099at 2307.095 kb on + strandat 2307.163 kb on - strandat 2307.317 kb on - strand, within PfGW456L13_2100at 2307.337 kb on + strand, within PfGW456L13_2100at 2307.337 kb on + strand, within PfGW456L13_2100at 2307.375 kb on + strand, within PfGW456L13_2100at 2307.375 kb on + strand, within PfGW456L13_2100at 2307.375 kb on + strand, within PfGW456L13_2100at 2307.376 kb on - strand, within PfGW456L13_2100at 2307.376 kb on - strand, within PfGW456L13_2100at 2307.555 kb on + strand, within PfGW456L13_2100at 2307.738 kb on + strandat 2307.738 kb on + strandat 2307.761 kb on + strandat 2307.779 kb on + strandat 2307.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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2,305,244 - PfGW456L13_2097 0.78 -0.3
2,305,283 + PfGW456L13_2097 0.82 -1.5
2,305,283 + PfGW456L13_2097 0.82 -1.8
2,305,284 - PfGW456L13_2097 0.82 -1.4
2,305,349 + PfGW456L13_2097 0.89 +1.9
2,305,349 + PfGW456L13_2097 0.89 +1.4
2,305,350 - PfGW456L13_2097 0.89 -3.5
2,305,350 - PfGW456L13_2097 0.89 -0.6
2,305,350 - PfGW456L13_2097 0.89 -0.5
2,305,350 - PfGW456L13_2097 0.89 -0.1
2,305,350 - PfGW456L13_2097 0.89 -1.5
2,305,350 - PfGW456L13_2097 0.89 -0.4
2,305,350 - PfGW456L13_2097 0.89 +0.1
2,305,350 - PfGW456L13_2097 0.89 +0.2
2,305,350 - PfGW456L13_2097 0.89 +0.5
2,305,350 - PfGW456L13_2097 0.89 -1.7
2,305,350 - PfGW456L13_2097 0.89 -0.5
2,305,455 + -0.3
2,305,455 + -0.7
2,305,456 - +0.2
2,305,665 + PfGW456L13_2098 0.34 -0.0
2,305,665 + PfGW456L13_2098 0.34 -0.5
2,305,666 - PfGW456L13_2098 0.34 -0.8
2,305,666 - PfGW456L13_2098 0.34 +0.2
2,305,677 + PfGW456L13_2098 0.36 -1.4
2,305,677 + PfGW456L13_2098 0.36 -0.3
2,305,677 + PfGW456L13_2098 0.36 -0.1
2,305,677 + PfGW456L13_2098 0.36 -0.1
2,305,677 + PfGW456L13_2098 0.36 +0.2
2,305,677 + PfGW456L13_2098 0.36 +0.1
2,305,677 + PfGW456L13_2098 0.36 -0.1
2,305,677 + PfGW456L13_2098 0.36 +0.5
2,305,677 + PfGW456L13_2098 0.36 +0.3
2,305,677 + PfGW456L13_2098 0.36 +0.6
2,305,677 + PfGW456L13_2098 0.36 +0.4
2,305,677 + PfGW456L13_2098 0.36 -0.4
2,305,678 - PfGW456L13_2098 0.36 -1.1
2,305,678 - PfGW456L13_2098 0.36 -0.3
2,305,678 - PfGW456L13_2098 0.36 -0.2
2,305,678 - PfGW456L13_2098 0.36 +0.7
2,305,678 - PfGW456L13_2098 0.36 -0.1
2,305,678 - PfGW456L13_2098 0.36 -0.1
2,305,678 - PfGW456L13_2098 0.36 -1.8
2,305,678 - PfGW456L13_2098 0.36 -1.1
2,305,678 - PfGW456L13_2098 0.36 -2.1
2,305,678 - PfGW456L13_2098 0.36 +1.4
2,305,678 - PfGW456L13_2098 0.36 -0.3
2,305,678 - PfGW456L13_2098 0.36 -1.9
2,305,755 + PfGW456L13_2098 0.48 +0.3
2,305,755 + PfGW456L13_2098 0.48 -1.7
2,305,830 + PfGW456L13_2098 0.59 -2.5
2,305,830 + PfGW456L13_2098 0.59 -0.3
2,305,831 - PfGW456L13_2098 0.59 -1.4
2,306,004 + PfGW456L13_2098 0.85 -0.2
2,306,004 + PfGW456L13_2098 0.85 +3.1
2,306,005 - PfGW456L13_2098 0.85 +0.1
2,306,005 - PfGW456L13_2098 0.85 -0.8
2,306,005 - PfGW456L13_2098 0.85 -0.9
2,306,037 + +0.0
2,306,037 + +0.5
2,306,037 + -1.4
2,306,037 + +1.1
2,306,038 - +0.2
2,306,038 - -1.1
2,306,221 + -2.1
2,306,221 + -0.3
2,306,222 - +0.3
2,306,222 - +0.9
2,306,222 - +0.9
2,306,254 + PfGW456L13_2099 0.13 +1.0
2,306,254 + PfGW456L13_2099 0.13 +0.5
2,306,280 + PfGW456L13_2099 0.15 -0.5
2,306,281 - PfGW456L13_2099 0.16 -0.0
2,306,281 - PfGW456L13_2099 0.16 +0.6
2,306,281 - PfGW456L13_2099 0.16 +0.3
2,306,352 + PfGW456L13_2099 0.23 +0.2
2,306,352 + PfGW456L13_2099 0.23 -0.4
2,306,353 - PfGW456L13_2099 0.23 -0.1
2,306,353 - PfGW456L13_2099 0.23 +0.8
2,306,353 - PfGW456L13_2099 0.23 +0.9
2,306,353 - PfGW456L13_2099 0.23 +0.7
2,306,353 - PfGW456L13_2099 0.23 +2.2
2,306,353 - PfGW456L13_2099 0.23 +0.1
2,306,353 - PfGW456L13_2099 0.23 +0.8
2,306,353 - PfGW456L13_2099 0.23 -0.4
2,306,353 - PfGW456L13_2099 0.23 +0.2
2,306,414 + PfGW456L13_2099 0.29 -1.5
2,306,415 - PfGW456L13_2099 0.29 +0.1
2,306,511 + PfGW456L13_2099 0.39 -0.3
2,306,517 + PfGW456L13_2099 0.39 +0.2
2,306,517 + PfGW456L13_2099 0.39 -0.3
2,306,517 + PfGW456L13_2099 0.39 +0.4
2,306,517 + PfGW456L13_2099 0.39 +1.2
2,306,517 + PfGW456L13_2099 0.39 +1.3
2,306,518 - PfGW456L13_2099 0.39 +0.1
2,306,565 + PfGW456L13_2099 0.44 -1.1
2,306,565 + PfGW456L13_2099 0.44 -0.0
2,306,566 - PfGW456L13_2099 0.44 +0.0
2,306,566 - PfGW456L13_2099 0.44 -1.5
2,306,566 - PfGW456L13_2099 0.44 +0.5
2,306,601 + PfGW456L13_2099 0.48 -0.0
2,306,601 + PfGW456L13_2099 0.48 -1.1
2,306,601 + PfGW456L13_2099 0.48 -0.7
2,306,602 - PfGW456L13_2099 0.48 -1.3
2,306,604 + PfGW456L13_2099 0.48 -0.1
2,306,604 + PfGW456L13_2099 0.48 -0.3
2,306,604 + PfGW456L13_2099 0.48 +0.3
2,306,604 + PfGW456L13_2099 0.48 -0.3
2,306,604 + PfGW456L13_2099 0.48 -0.2
2,306,604 + PfGW456L13_2099 0.48 +0.9
2,306,604 + PfGW456L13_2099 0.48 -0.9
2,306,604 + PfGW456L13_2099 0.48 +0.1
2,306,605 - PfGW456L13_2099 0.48 +1.3
2,306,605 - PfGW456L13_2099 0.48 -0.7
2,306,605 - PfGW456L13_2099 0.48 +0.3
2,306,631 + PfGW456L13_2099 0.51 -1.2
2,306,726 + +2.3
2,306,726 + PfGW456L13_2099 0.61 +0.3
2,306,730 + PfGW456L13_2099 0.61 +0.0
2,306,730 + PfGW456L13_2099 0.61 -0.1
2,306,730 + PfGW456L13_2099 0.61 -0.1
2,306,730 + PfGW456L13_2099 0.61 +0.4
2,306,730 + PfGW456L13_2099 0.61 +0.6
2,306,730 + PfGW456L13_2099 0.61 -0.6
2,306,730 + PfGW456L13_2099 0.61 -1.3
2,306,730 + PfGW456L13_2099 0.61 -0.2
2,306,731 - PfGW456L13_2099 0.61 -2.2
2,306,731 - PfGW456L13_2099 0.61 -0.7
2,306,731 - PfGW456L13_2099 0.61 -0.7
2,306,731 - PfGW456L13_2099 0.61 +0.1
2,306,731 - PfGW456L13_2099 0.61 +0.1
2,306,731 - PfGW456L13_2099 0.61 -0.3
2,306,731 - PfGW456L13_2099 0.61 -2.2
2,306,731 - PfGW456L13_2099 0.61 -2.4
2,306,731 - PfGW456L13_2099 0.61 +0.5
2,306,731 - PfGW456L13_2099 0.61 -1.2
2,306,731 - PfGW456L13_2099 0.61 +1.3
2,306,731 - PfGW456L13_2099 0.61 -1.4
2,306,840 + PfGW456L13_2099 0.72 -0.6
2,306,841 - PfGW456L13_2099 0.72 +1.8
2,306,841 - PfGW456L13_2099 0.72 +0.9
2,307,095 + -0.3
2,307,163 - +0.1
2,307,317 - PfGW456L13_2100 0.25 -0.2
2,307,337 + PfGW456L13_2100 0.29 +0.6
2,307,337 + PfGW456L13_2100 0.29 -0.2
2,307,375 + PfGW456L13_2100 0.35 -0.3
2,307,375 + PfGW456L13_2100 0.35 -0.7
2,307,375 + PfGW456L13_2100 0.35 -0.7
2,307,376 - PfGW456L13_2100 0.35 -0.5
2,307,376 - PfGW456L13_2100 0.35 -1.1
2,307,555 + PfGW456L13_2100 0.66 -0.5
2,307,738 + +0.5
2,307,738 + -0.9
2,307,761 + +0.2
2,307,779 + -1.7
2,307,780 - -1.7

Or see this region's nucleotide sequence