Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1857 and PfGW456L13_1858 are separated by 53 nucleotides PfGW456L13_1858 and PfGW456L13_1859 are separated by 52 nucleotides PfGW456L13_1859 and PfGW456L13_1860 are separated by 81 nucleotides
PfGW456L13_1857 - TolA protein, at 2,043,015 to 2,044,094
_1857
PfGW456L13_1858 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 2,044,148 to 2,045,392
_1858
PfGW456L13_1859 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 2,045,445 to 2,045,942
_1859
PfGW456L13_1860 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 2,046,024 to 2,046,782
_1860
Position (kb)
2044
2045
2046 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.403 kb on + strand at 2045.410 kb on + strand at 2045.410 kb on + strand at 2045.410 kb on + strand at 2045.410 kb on + strand at 2045.414 kb on + strand at 2045.414 kb on + strand at 2045.936 kb on + strand at 2045.936 kb on + strand at 2045.936 kb on + strand at 2045.940 kb on + strand at 2045.940 kb on + strand at 2045.971 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 2,045,403 + +0.2 2,045,403 + +0.8 2,045,403 + +0.9 2,045,403 + +0.4 2,045,403 + +1.4 2,045,403 + +2.0 2,045,403 + -0.6 2,045,403 + -0.8 2,045,403 + -1.6 2,045,403 + -0.6 2,045,403 + +0.3 2,045,403 + +0.7 2,045,403 + +0.7 2,045,403 + +0.5 2,045,403 + +0.0 2,045,403 + -1.0 2,045,410 + -1.3 2,045,410 + -1.0 2,045,410 + +0.0 2,045,410 + +1.0 2,045,414 + +1.8 2,045,414 + +0.4 2,045,936 + -4.6 2,045,936 + -2.7 2,045,936 + -2.7 2,045,940 + -4.7 2,045,940 + -1.6 2,045,971 + -2.0
Or see this region's nucleotide sequence