Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1858

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1857 and PfGW456L13_1858 are separated by 53 nucleotidesPfGW456L13_1858 and PfGW456L13_1859 are separated by 52 nucleotidesPfGW456L13_1859 and PfGW456L13_1860 are separated by 81 nucleotides PfGW456L13_1857 - TolA protein, at 2,043,015 to 2,044,094 _1857 PfGW456L13_1858 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 2,044,148 to 2,045,392 _1858 PfGW456L13_1859 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 2,045,445 to 2,045,942 _1859 PfGW456L13_1860 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 2,046,024 to 2,046,782 _1860 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.403 kb on + strandat 2045.410 kb on + strandat 2045.410 kb on + strandat 2045.410 kb on + strandat 2045.410 kb on + strandat 2045.414 kb on + strandat 2045.414 kb on + strandat 2045.936 kb on + strandat 2045.936 kb on + strandat 2045.936 kb on + strandat 2045.940 kb on + strandat 2045.940 kb on + strandat 2045.971 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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2,045,403 + +0.2
2,045,403 + +0.8
2,045,403 + +0.9
2,045,403 + +0.4
2,045,403 + +1.4
2,045,403 + +2.0
2,045,403 + -0.6
2,045,403 + -0.8
2,045,403 + -1.6
2,045,403 + -0.6
2,045,403 + +0.3
2,045,403 + +0.7
2,045,403 + +0.7
2,045,403 + +0.5
2,045,403 + +0.0
2,045,403 + -1.0
2,045,410 + -1.3
2,045,410 + -1.0
2,045,410 + +0.0
2,045,410 + +1.0
2,045,414 + +1.8
2,045,414 + +0.4
2,045,936 + -4.6
2,045,936 + -2.7
2,045,936 + -2.7
2,045,940 + -4.7
2,045,940 + -1.6
2,045,971 + -2.0

Or see this region's nucleotide sequence