Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_155

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_153 and PfGW456L13_154 are separated by 12 nucleotidesPfGW456L13_154 and PfGW456L13_155 are separated by 93 nucleotidesPfGW456L13_155 and PfGW456L13_156 overlap by 1 nucleotides PfGW456L13_153 - GTP-binding protein HflX, at 177,295 to 178,596 _153 PfGW456L13_154 - RNA-binding protein Hfq, at 178,609 to 178,869 _154 PfGW456L13_155 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 178,963 to 179,934 _155 PfGW456L13_156 - DNA mismatch repair protein MutL, at 179,934 to 181,844 _156 Position (kb) 178 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 177.978 kb on + strand, within PfGW456L13_153at 177.978 kb on + strand, within PfGW456L13_153at 177.978 kb on + strand, within PfGW456L13_153at 177.978 kb on + strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 178.195 kb on - strand, within PfGW456L13_153at 178.195 kb on - strand, within PfGW456L13_153at 178.195 kb on - strand, within PfGW456L13_153at 178.267 kb on - strand, within PfGW456L13_153at 178.311 kb on + strand, within PfGW456L13_153at 178.311 kb on + strand, within PfGW456L13_153at 178.312 kb on - strand, within PfGW456L13_153at 178.607 kb on + strandat 178.608 kb on - strandat 178.608 kb on - strandat 178.608 kb on - strandat 178.608 kb on - strandat 178.618 kb on - strandat 178.896 kb on - strandat 178.898 kb on - strandat 178.898 kb on - strandat 178.898 kb on - strandat 178.992 kb on - strandat 179.148 kb on - strand, within PfGW456L13_155at 179.148 kb on - strand, within PfGW456L13_155at 179.170 kb on + strand, within PfGW456L13_155at 179.171 kb on - strand, within PfGW456L13_155at 179.171 kb on - strand, within PfGW456L13_155at 179.179 kb on + strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.212 kb on - strand, within PfGW456L13_155at 179.275 kb on - strand, within PfGW456L13_155at 179.291 kb on - strand, within PfGW456L13_155at 179.615 kb on + strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.715 kb on - strand, within PfGW456L13_155at 179.715 kb on - strand, within PfGW456L13_155at 179.866 kb on + strandat 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.475 kb on + strand, within PfGW456L13_156at 180.475 kb on + strand, within PfGW456L13_156at 180.475 kb on + strand, within PfGW456L13_156at 180.476 kb on - strand, within PfGW456L13_156at 180.476 kb on - strand, within PfGW456L13_156at 180.583 kb on + strand, within PfGW456L13_156at 180.635 kb on - strand, within PfGW456L13_156at 180.635 kb on - strand, within PfGW456L13_156at 180.641 kb on - strand, within PfGW456L13_156at 180.641 kb on - strand, within PfGW456L13_156at 180.641 kb on - strand, within PfGW456L13_156at 180.647 kb on - strand, within PfGW456L13_156at 180.857 kb on - strand, within PfGW456L13_156

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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177,978 + PfGW456L13_153 0.52 -3.1
177,978 + PfGW456L13_153 0.52 -0.6
177,978 + PfGW456L13_153 0.52 +1.6
177,978 + PfGW456L13_153 0.52 -1.8
177,979 - PfGW456L13_153 0.53 -0.6
177,979 - PfGW456L13_153 0.53 -0.5
177,979 - PfGW456L13_153 0.53 +0.2
177,979 - PfGW456L13_153 0.53 -1.0
178,195 - PfGW456L13_153 0.69 -0.9
178,195 - PfGW456L13_153 0.69 -1.4
178,195 - PfGW456L13_153 0.69 +0.7
178,267 - PfGW456L13_153 0.75 -2.7
178,311 + PfGW456L13_153 0.78 +0.2
178,311 + PfGW456L13_153 0.78 -1.2
178,312 - PfGW456L13_153 0.78 -2.4
178,607 + -1.9
178,608 - -1.2
178,608 - -0.9
178,608 - -1.3
178,608 - -1.4
178,618 - -2.1
178,896 - +2.0
178,898 - +0.6
178,898 - +1.6
178,898 - +1.5
178,992 - -0.5
179,148 - PfGW456L13_155 0.19 +1.4
179,148 - PfGW456L13_155 0.19 -0.5
179,170 + PfGW456L13_155 0.21 -0.6
179,171 - PfGW456L13_155 0.21 +2.0
179,171 - PfGW456L13_155 0.21 +1.2
179,179 + PfGW456L13_155 0.22 -0.6
179,180 - PfGW456L13_155 0.22 +0.5
179,180 - PfGW456L13_155 0.22 -0.5
179,180 - PfGW456L13_155 0.22 +2.0
179,180 - PfGW456L13_155 0.22 +0.0
179,212 - PfGW456L13_155 0.26 +1.7
179,275 - PfGW456L13_155 0.32 +1.4
179,291 - PfGW456L13_155 0.34 -1.5
179,615 + PfGW456L13_155 0.67 -0.6
179,616 - PfGW456L13_155 0.67 -0.5
179,616 - PfGW456L13_155 0.67 +0.7
179,616 - PfGW456L13_155 0.67 -0.6
179,616 - PfGW456L13_155 0.67 -0.8
179,616 - PfGW456L13_155 0.67 +0.4
179,715 - PfGW456L13_155 0.77 +0.2
179,715 - PfGW456L13_155 0.77 -0.9
179,866 + -1.4
180,406 + PfGW456L13_156 0.25 -1.2
180,406 + PfGW456L13_156 0.25 -0.9
180,406 + PfGW456L13_156 0.25 +0.5
180,406 + PfGW456L13_156 0.25 +1.0
180,406 + PfGW456L13_156 0.25 -0.4
180,406 + PfGW456L13_156 0.25 +0.8
180,407 - PfGW456L13_156 0.25 -2.1
180,407 - PfGW456L13_156 0.25 +0.5
180,407 - PfGW456L13_156 0.25 -0.2
180,407 - PfGW456L13_156 0.25 -0.4
180,407 - PfGW456L13_156 0.25 -0.1
180,407 - PfGW456L13_156 0.25 -1.6
180,407 - PfGW456L13_156 0.25 -2.5
180,407 - PfGW456L13_156 0.25 -1.1
180,407 - PfGW456L13_156 0.25 +0.3
180,407 - PfGW456L13_156 0.25 +0.2
180,407 - PfGW456L13_156 0.25 +0.0
180,475 + PfGW456L13_156 0.28 +0.1
180,475 + PfGW456L13_156 0.28 -1.3
180,475 + PfGW456L13_156 0.28 +0.5
180,476 - PfGW456L13_156 0.28 -0.3
180,476 - PfGW456L13_156 0.28 -1.3
180,583 + PfGW456L13_156 0.34 -1.6
180,635 - PfGW456L13_156 0.37 -2.1
180,635 - PfGW456L13_156 0.37 -0.4
180,641 - PfGW456L13_156 0.37 +0.8
180,641 - PfGW456L13_156 0.37 +1.0
180,641 - PfGW456L13_156 0.37 +0.6
180,647 - PfGW456L13_156 0.37 +0.1
180,857 - PfGW456L13_156 0.48 -0.4

Or see this region's nucleotide sequence