Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19100

Experiment: D-Glucose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19095 and PFLU_RS19100 are separated by 212 nucleotidesPFLU_RS19100 and PFLU_RS19105 overlap by 4 nucleotides PFLU_RS19095: PFLU_RS19095 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 4,316,888 to 4,318,927 _RS19095 PFLU_RS19100: PFLU_RS19100 - carbon-nitrogen hydrolase family protein, at 4,319,140 to 4,320,270 _RS19100 PFLU_RS19105: PFLU_RS19105 - AraC family transcriptional regulator, at 4,320,267 to 4,321,295 _RS19105 Position (kb) 4319 4320 4321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4318.184 kb on - strand, within PFLU_RS19095at 4318.282 kb on + strand, within PFLU_RS19095at 4318.282 kb on + strand, within PFLU_RS19095at 4318.283 kb on - strand, within PFLU_RS19095at 4318.283 kb on - strand, within PFLU_RS19095at 4318.283 kb on - strand, within PFLU_RS19095at 4318.283 kb on - strand, within PFLU_RS19095at 4318.283 kb on - strand, within PFLU_RS19095at 4318.283 kb on - strand, within PFLU_RS19095at 4318.354 kb on - strand, within PFLU_RS19095at 4318.356 kb on + strand, within PFLU_RS19095at 4318.357 kb on - strand, within PFLU_RS19095at 4318.357 kb on - strand, within PFLU_RS19095at 4318.419 kb on + strand, within PFLU_RS19095at 4318.419 kb on + strand, within PFLU_RS19095at 4318.419 kb on + strand, within PFLU_RS19095at 4318.419 kb on + strand, within PFLU_RS19095at 4318.419 kb on + strand, within PFLU_RS19095at 4318.419 kb on + strand, within PFLU_RS19095at 4318.420 kb on - strand, within PFLU_RS19095at 4318.590 kb on + strand, within PFLU_RS19095at 4318.590 kb on + strand, within PFLU_RS19095at 4318.590 kb on + strand, within PFLU_RS19095at 4318.621 kb on + strand, within PFLU_RS19095at 4318.621 kb on + strand, within PFLU_RS19095at 4318.621 kb on + strand, within PFLU_RS19095at 4318.621 kb on + strand, within PFLU_RS19095at 4318.714 kb on - strand, within PFLU_RS19095at 4318.792 kb on - strandat 4318.792 kb on - strandat 4318.792 kb on - strandat 4318.859 kb on - strandat 4318.876 kb on + strandat 4318.877 kb on - strandat 4318.877 kb on - strandat 4318.877 kb on - strandat 4318.877 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4318.990 kb on - strandat 4319.003 kb on + strandat 4319.003 kb on + strandat 4319.003 kb on + strandat 4319.003 kb on + strandat 4319.003 kb on + strandat 4319.003 kb on + strandat 4319.003 kb on + strandat 4319.003 kb on + strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.004 kb on - strandat 4319.047 kb on - strandat 4319.100 kb on - strandat 4319.145 kb on + strandat 4319.145 kb on + strandat 4319.197 kb on + strandat 4319.198 kb on - strandat 4319.233 kb on + strandat 4319.233 kb on + strandat 4319.233 kb on + strandat 4319.233 kb on + strandat 4319.234 kb on - strandat 4319.234 kb on - strandat 4319.234 kb on - strandat 4319.234 kb on - strandat 4319.234 kb on - strandat 4319.234 kb on - strandat 4319.251 kb on - strandat 4319.333 kb on - strand, within PFLU_RS19100at 4319.371 kb on + strand, within PFLU_RS19100at 4319.436 kb on + strand, within PFLU_RS19100at 4319.437 kb on - strand, within PFLU_RS19100at 4319.590 kb on + strand, within PFLU_RS19100at 4319.626 kb on + strand, within PFLU_RS19100at 4319.627 kb on - strand, within PFLU_RS19100at 4319.746 kb on + strand, within PFLU_RS19100at 4319.747 kb on - strand, within PFLU_RS19100at 4319.818 kb on + strand, within PFLU_RS19100at 4319.819 kb on - strand, within PFLU_RS19100at 4319.933 kb on - strand, within PFLU_RS19100at 4319.998 kb on - strand, within PFLU_RS19100at 4319.998 kb on - strand, within PFLU_RS19100at 4320.258 kb on + strandat 4320.369 kb on + strandat 4320.426 kb on + strand, within PFLU_RS19105at 4320.426 kb on + strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.427 kb on - strand, within PFLU_RS19105at 4320.594 kb on + strand, within PFLU_RS19105at 4320.594 kb on + strand, within PFLU_RS19105at 4320.595 kb on - strand, within PFLU_RS19105at 4320.595 kb on - strand, within PFLU_RS19105at 4320.660 kb on + strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.661 kb on - strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.675 kb on + strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.676 kb on - strand, within PFLU_RS19105at 4320.684 kb on + strand, within PFLU_RS19105at 4320.685 kb on - strand, within PFLU_RS19105at 4320.799 kb on - strand, within PFLU_RS19105at 4320.799 kb on - strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.810 kb on + strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.811 kb on - strand, within PFLU_RS19105at 4320.925 kb on + strand, within PFLU_RS19105at 4320.925 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.152 kb on + strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.153 kb on - strand, within PFLU_RS19105at 4321.192 kb on - strand, within PFLU_RS19105at 4321.192 kb on - strand, within PFLU_RS19105at 4321.192 kb on - strand, within PFLU_RS19105

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); with MOPS
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4,318,184 - PFLU_RS19095 0.64 +1.0
4,318,282 + PFLU_RS19095 0.68 -0.6
4,318,282 + PFLU_RS19095 0.68 -0.9
4,318,283 - PFLU_RS19095 0.68 +1.6
4,318,283 - PFLU_RS19095 0.68 +1.8
4,318,283 - PFLU_RS19095 0.68 +0.2
4,318,283 - PFLU_RS19095 0.68 -0.8
4,318,283 - PFLU_RS19095 0.68 +0.8
4,318,283 - PFLU_RS19095 0.68 -1.0
4,318,354 - PFLU_RS19095 0.72 +0.4
4,318,356 + PFLU_RS19095 0.72 -1.3
4,318,357 - PFLU_RS19095 0.72 -0.4
4,318,357 - PFLU_RS19095 0.72 -0.6
4,318,419 + PFLU_RS19095 0.75 +0.1
4,318,419 + PFLU_RS19095 0.75 -0.2
4,318,419 + PFLU_RS19095 0.75 +0.5
4,318,419 + PFLU_RS19095 0.75 -0.7
4,318,419 + PFLU_RS19095 0.75 +0.6
4,318,419 + PFLU_RS19095 0.75 -1.8
4,318,420 - PFLU_RS19095 0.75 -0.3
4,318,590 + PFLU_RS19095 0.83 +0.1
4,318,590 + PFLU_RS19095 0.83 -1.3
4,318,590 + PFLU_RS19095 0.83 +0.2
4,318,621 + PFLU_RS19095 0.85 +0.2
4,318,621 + PFLU_RS19095 0.85 -0.3
4,318,621 + PFLU_RS19095 0.85 -1.3
4,318,621 + PFLU_RS19095 0.85 +0.7
4,318,714 - PFLU_RS19095 0.90 -0.8
4,318,792 - +0.4
4,318,792 - +1.3
4,318,792 - -0.5
4,318,859 - -1.2
4,318,876 + -2.2
4,318,877 - +0.8
4,318,877 - -0.2
4,318,877 - +0.6
4,318,877 - -1.1
4,318,990 - -0.7
4,318,990 - -0.6
4,318,990 - +0.6
4,318,990 - -1.2
4,318,990 - -1.2
4,318,990 - +0.3
4,318,990 - -1.1
4,318,990 - -1.8
4,318,990 - -0.2
4,319,003 + -0.3
4,319,003 + +1.0
4,319,003 + -0.6
4,319,003 + +1.3
4,319,003 + +0.1
4,319,003 + +0.4
4,319,003 + +0.3
4,319,003 + -1.7
4,319,004 - -1.1
4,319,004 - -2.4
4,319,004 - +0.3
4,319,004 - -0.5
4,319,004 - +0.8
4,319,004 - +1.1
4,319,004 - +0.0
4,319,004 - -0.4
4,319,004 - -0.2
4,319,004 - +0.5
4,319,004 - +0.5
4,319,004 - -0.3
4,319,004 - -1.9
4,319,047 - +0.3
4,319,100 - +0.6
4,319,145 + -0.5
4,319,145 + +0.2
4,319,197 + +0.7
4,319,198 - +0.1
4,319,233 + -0.2
4,319,233 + +1.7
4,319,233 + +0.1
4,319,233 + -0.6
4,319,234 - -0.1
4,319,234 - -0.1
4,319,234 - -0.0
4,319,234 - -0.7
4,319,234 - -0.9
4,319,234 - -1.8
4,319,251 - +0.6
4,319,333 - PFLU_RS19100 0.17 +0.6
4,319,371 + PFLU_RS19100 0.20 +0.1
4,319,436 + PFLU_RS19100 0.26 +0.6
4,319,437 - PFLU_RS19100 0.26 -0.2
4,319,590 + PFLU_RS19100 0.40 -0.4
4,319,626 + PFLU_RS19100 0.43 +0.3
4,319,627 - PFLU_RS19100 0.43 -0.1
4,319,746 + PFLU_RS19100 0.54 +1.6
4,319,747 - PFLU_RS19100 0.54 +0.2
4,319,818 + PFLU_RS19100 0.60 +1.7
4,319,819 - PFLU_RS19100 0.60 +1.4
4,319,933 - PFLU_RS19100 0.70 -0.6
4,319,998 - PFLU_RS19100 0.76 +1.3
4,319,998 - PFLU_RS19100 0.76 +0.8
4,320,258 + +0.5
4,320,369 + +0.8
4,320,426 + PFLU_RS19105 0.15 +0.2
4,320,426 + PFLU_RS19105 0.15 -0.6
4,320,427 - PFLU_RS19105 0.16 +1.1
4,320,427 - PFLU_RS19105 0.16 +0.4
4,320,427 - PFLU_RS19105 0.16 +1.0
4,320,427 - PFLU_RS19105 0.16 +0.1
4,320,427 - PFLU_RS19105 0.16 +0.3
4,320,594 + PFLU_RS19105 0.32 -1.1
4,320,594 + PFLU_RS19105 0.32 -0.0
4,320,595 - PFLU_RS19105 0.32 +0.8
4,320,595 - PFLU_RS19105 0.32 +0.8
4,320,660 + PFLU_RS19105 0.38 -0.6
4,320,661 - PFLU_RS19105 0.38 +0.0
4,320,661 - PFLU_RS19105 0.38 +1.1
4,320,661 - PFLU_RS19105 0.38 -0.7
4,320,661 - PFLU_RS19105 0.38 +0.4
4,320,675 + PFLU_RS19105 0.40 -0.0
4,320,675 + PFLU_RS19105 0.40 -0.0
4,320,675 + PFLU_RS19105 0.40 +0.1
4,320,675 + PFLU_RS19105 0.40 -1.0
4,320,676 - PFLU_RS19105 0.40 -0.2
4,320,676 - PFLU_RS19105 0.40 -0.2
4,320,676 - PFLU_RS19105 0.40 +0.6
4,320,676 - PFLU_RS19105 0.40 -0.8
4,320,684 + PFLU_RS19105 0.41 +1.9
4,320,685 - PFLU_RS19105 0.41 -0.4
4,320,799 - PFLU_RS19105 0.52 +0.1
4,320,799 - PFLU_RS19105 0.52 -0.0
4,320,810 + PFLU_RS19105 0.53 -0.6
4,320,810 + PFLU_RS19105 0.53 +0.3
4,320,810 + PFLU_RS19105 0.53 -0.5
4,320,810 + PFLU_RS19105 0.53 +1.0
4,320,811 - PFLU_RS19105 0.53 +0.8
4,320,811 - PFLU_RS19105 0.53 +0.7
4,320,811 - PFLU_RS19105 0.53 -1.2
4,320,811 - PFLU_RS19105 0.53 -0.5
4,320,811 - PFLU_RS19105 0.53 -2.3
4,320,811 - PFLU_RS19105 0.53 -0.1
4,320,811 - PFLU_RS19105 0.53 -3.1
4,320,811 - PFLU_RS19105 0.53 +0.8
4,320,925 + PFLU_RS19105 0.64 -1.4
4,320,925 + PFLU_RS19105 0.64 +0.8
4,321,152 + PFLU_RS19105 0.86 -0.0
4,321,152 + PFLU_RS19105 0.86 +0.2
4,321,152 + PFLU_RS19105 0.86 +3.0
4,321,152 + PFLU_RS19105 0.86 +0.6
4,321,152 + PFLU_RS19105 0.86 +0.9
4,321,152 + PFLU_RS19105 0.86 +0.9
4,321,153 - PFLU_RS19105 0.86 +1.0
4,321,153 - PFLU_RS19105 0.86 -0.9
4,321,153 - PFLU_RS19105 0.86 -0.1
4,321,153 - PFLU_RS19105 0.86 -0.9
4,321,153 - PFLU_RS19105 0.86 -0.2
4,321,153 - PFLU_RS19105 0.86 +0.3
4,321,153 - PFLU_RS19105 0.86 +0.2
4,321,192 - PFLU_RS19105 0.90 -1.3
4,321,192 - PFLU_RS19105 0.90 +0.9
4,321,192 - PFLU_RS19105 0.90 -1.3

Or see this region's nucleotide sequence