Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16695

Experiment: D-Glucose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS16685 and PFLU_RS16690 are separated by 10 nucleotidesPFLU_RS16690 and PFLU_RS16695 are separated by 2 nucleotidesPFLU_RS16695 and PFLU_RS16700 are separated by 22 nucleotides PFLU_RS16685: PFLU_RS16685 - AMP-binding protein, at 3,780,871 to 3,781,926 _RS16685 PFLU_RS16690: PFLU_RS16690 - ABC transporter ATP-binding protein, at 3,781,937 to 3,782,713 _RS16690 PFLU_RS16695: PFLU_RS16695 - branched-chain amino acid ABC transporter permease, at 3,782,716 to 3,783,597 _RS16695 PFLU_RS16700: PFLU_RS16700 - branched-chain amino acid ABC transporter permease, at 3,783,620 to 3,784,687 _RS16700 Position (kb) 3782 3783 3784Strain fitness (log2 ratio) -3 -2 -1 0 1at 3781.960 kb on - strandat 3781.999 kb on + strandat 3781.999 kb on + strandat 3782.000 kb on - strandat 3782.111 kb on + strand, within PFLU_RS16690at 3782.111 kb on + strand, within PFLU_RS16690at 3782.112 kb on - strand, within PFLU_RS16690at 3782.400 kb on + strand, within PFLU_RS16690at 3782.400 kb on + strand, within PFLU_RS16690at 3782.401 kb on - strand, within PFLU_RS16690at 3782.415 kb on - strand, within PFLU_RS16690at 3782.634 kb on - strand, within PFLU_RS16690at 3782.634 kb on - strand, within PFLU_RS16690at 3782.768 kb on - strandat 3782.768 kb on - strandat 3782.800 kb on + strandat 3782.801 kb on - strandat 3782.801 kb on - strandat 3783.022 kb on + strand, within PFLU_RS16695at 3783.023 kb on - strand, within PFLU_RS16695at 3783.023 kb on - strand, within PFLU_RS16695at 3783.274 kb on - strand, within PFLU_RS16695at 3783.478 kb on + strand, within PFLU_RS16695at 3783.479 kb on - strand, within PFLU_RS16695at 3783.479 kb on - strand, within PFLU_RS16695at 3783.523 kb on + strandat 3783.627 kb on - strandat 3783.627 kb on - strandat 3783.758 kb on + strand, within PFLU_RS16700at 3783.759 kb on - strand, within PFLU_RS16700at 3783.894 kb on - strand, within PFLU_RS16700at 3784.013 kb on + strand, within PFLU_RS16700at 3784.164 kb on - strand, within PFLU_RS16700at 3784.167 kb on + strand, within PFLU_RS16700at 3784.167 kb on + strand, within PFLU_RS16700at 3784.167 kb on + strand, within PFLU_RS16700at 3784.167 kb on + strand, within PFLU_RS16700at 3784.168 kb on - strand, within PFLU_RS16700at 3784.168 kb on - strand, within PFLU_RS16700at 3784.168 kb on - strand, within PFLU_RS16700at 3784.334 kb on + strand, within PFLU_RS16700at 3784.335 kb on - strand, within PFLU_RS16700

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); with MOPS
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3,781,960 - +0.6
3,781,999 + +0.9
3,781,999 + -0.8
3,782,000 - -0.2
3,782,111 + PFLU_RS16690 0.22 +0.3
3,782,111 + PFLU_RS16690 0.22 +0.6
3,782,112 - PFLU_RS16690 0.23 -0.4
3,782,400 + PFLU_RS16690 0.60 -0.5
3,782,400 + PFLU_RS16690 0.60 -0.5
3,782,401 - PFLU_RS16690 0.60 -0.4
3,782,415 - PFLU_RS16690 0.62 -2.5
3,782,634 - PFLU_RS16690 0.90 -0.8
3,782,634 - PFLU_RS16690 0.90 +0.6
3,782,768 - -0.3
3,782,768 - -0.6
3,782,800 + +0.1
3,782,801 - -0.6
3,782,801 - +0.0
3,783,022 + PFLU_RS16695 0.35 -3.0
3,783,023 - PFLU_RS16695 0.35 -1.4
3,783,023 - PFLU_RS16695 0.35 -0.4
3,783,274 - PFLU_RS16695 0.63 -0.6
3,783,478 + PFLU_RS16695 0.86 -2.0
3,783,479 - PFLU_RS16695 0.87 -1.6
3,783,479 - PFLU_RS16695 0.87 -1.1
3,783,523 + +0.2
3,783,627 - +0.1
3,783,627 - +0.7
3,783,758 + PFLU_RS16700 0.13 +0.8
3,783,759 - PFLU_RS16700 0.13 +0.3
3,783,894 - PFLU_RS16700 0.26 +1.0
3,784,013 + PFLU_RS16700 0.37 -0.1
3,784,164 - PFLU_RS16700 0.51 -0.4
3,784,167 + PFLU_RS16700 0.51 -0.2
3,784,167 + PFLU_RS16700 0.51 +0.3
3,784,167 + PFLU_RS16700 0.51 -0.0
3,784,167 + PFLU_RS16700 0.51 -1.5
3,784,168 - PFLU_RS16700 0.51 +0.7
3,784,168 - PFLU_RS16700 0.51 +0.5
3,784,168 - PFLU_RS16700 0.51 +0.9
3,784,334 + PFLU_RS16700 0.67 +0.2
3,784,335 - PFLU_RS16700 0.67 -0.4

Or see this region's nucleotide sequence