Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06960

Experiment: D-Glucose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06950 and PFLU_RS06955 are separated by 160 nucleotidesPFLU_RS06955 and PFLU_RS06960 are separated by 117 nucleotidesPFLU_RS06960 and PFLU_RS06965 are separated by 125 nucleotides PFLU_RS06950: PFLU_RS06950 - aldolase, at 1,556,225 to 1,557,007 _RS06950 PFLU_RS06955: PFLU_RS06955 - helix-turn-helix domain-containing protein, at 1,557,168 to 1,557,695 _RS06955 PFLU_RS06960: PFLU_RS06960 - DUF4917 family protein, at 1,557,813 to 1,558,829 _RS06960 PFLU_RS06965: PFLU_RS06965 - L-threonine dehydrogenase, at 1,558,955 to 1,560,103 _RS06965 Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.814 kb on + strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.815 kb on - strand, within PFLU_RS06950at 1556.926 kb on + strand, within PFLU_RS06950at 1556.926 kb on + strand, within PFLU_RS06950at 1556.926 kb on + strand, within PFLU_RS06950at 1556.926 kb on + strand, within PFLU_RS06950at 1556.926 kb on + strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.927 kb on - strand, within PFLU_RS06950at 1556.993 kb on + strandat 1556.993 kb on + strandat 1556.994 kb on - strandat 1556.994 kb on - strandat 1557.144 kb on + strandat 1557.252 kb on + strand, within PFLU_RS06955at 1557.252 kb on + strand, within PFLU_RS06955at 1557.252 kb on + strand, within PFLU_RS06955at 1557.252 kb on + strand, within PFLU_RS06955at 1557.253 kb on - strand, within PFLU_RS06955at 1557.253 kb on - strand, within PFLU_RS06955at 1557.253 kb on - strand, within PFLU_RS06955at 1557.253 kb on - strand, within PFLU_RS06955at 1557.253 kb on - strand, within PFLU_RS06955at 1557.253 kb on - strand, within PFLU_RS06955at 1557.375 kb on + strand, within PFLU_RS06955at 1557.375 kb on + strand, within PFLU_RS06955at 1557.375 kb on + strand, within PFLU_RS06955at 1557.375 kb on + strand, within PFLU_RS06955at 1557.376 kb on - strand, within PFLU_RS06955at 1557.474 kb on + strand, within PFLU_RS06955at 1557.474 kb on + strand, within PFLU_RS06955at 1557.474 kb on + strand, within PFLU_RS06955at 1557.475 kb on - strand, within PFLU_RS06955at 1557.475 kb on - strand, within PFLU_RS06955at 1557.797 kb on + strandat 1557.797 kb on + strandat 1557.797 kb on + strandat 1557.797 kb on + strandat 1557.797 kb on + strandat 1557.797 kb on + strandat 1557.797 kb on + strandat 1557.798 kb on - strandat 1557.798 kb on - strandat 1557.798 kb on - strandat 1557.798 kb on - strandat 1557.935 kb on + strand, within PFLU_RS06960at 1557.936 kb on - strand, within PFLU_RS06960at 1558.079 kb on - strand, within PFLU_RS06960at 1558.093 kb on + strand, within PFLU_RS06960at 1558.093 kb on + strand, within PFLU_RS06960at 1558.094 kb on - strand, within PFLU_RS06960at 1558.094 kb on - strand, within PFLU_RS06960at 1558.094 kb on - strand, within PFLU_RS06960at 1558.094 kb on - strand, within PFLU_RS06960at 1558.094 kb on - strand, within PFLU_RS06960at 1558.094 kb on - strand, within PFLU_RS06960at 1558.094 kb on - strand, within PFLU_RS06960at 1558.208 kb on + strand, within PFLU_RS06960at 1558.208 kb on + strand, within PFLU_RS06960at 1558.208 kb on + strand, within PFLU_RS06960at 1558.208 kb on + strand, within PFLU_RS06960at 1558.208 kb on + strand, within PFLU_RS06960at 1558.209 kb on - strand, within PFLU_RS06960at 1558.209 kb on - strand, within PFLU_RS06960at 1558.209 kb on - strand, within PFLU_RS06960at 1558.209 kb on - strand, within PFLU_RS06960at 1558.209 kb on - strand, within PFLU_RS06960at 1558.209 kb on - strand, within PFLU_RS06960at 1558.381 kb on + strand, within PFLU_RS06960at 1558.381 kb on + strand, within PFLU_RS06960at 1558.381 kb on + strand, within PFLU_RS06960at 1558.381 kb on + strand, within PFLU_RS06960at 1558.395 kb on + strand, within PFLU_RS06960at 1558.396 kb on + strand, within PFLU_RS06960at 1558.396 kb on + strand, within PFLU_RS06960at 1558.397 kb on - strand, within PFLU_RS06960at 1558.397 kb on - strand, within PFLU_RS06960at 1558.397 kb on - strand, within PFLU_RS06960at 1558.406 kb on + strand, within PFLU_RS06960at 1558.407 kb on - strand, within PFLU_RS06960at 1558.407 kb on - strand, within PFLU_RS06960at 1558.420 kb on + strand, within PFLU_RS06960at 1558.420 kb on + strand, within PFLU_RS06960at 1558.481 kb on + strand, within PFLU_RS06960at 1558.497 kb on - strand, within PFLU_RS06960at 1558.525 kb on + strand, within PFLU_RS06960at 1558.525 kb on + strand, within PFLU_RS06960at 1558.525 kb on + strand, within PFLU_RS06960at 1558.526 kb on - strand, within PFLU_RS06960at 1558.526 kb on - strand, within PFLU_RS06960at 1558.526 kb on - strand, within PFLU_RS06960at 1558.528 kb on + strand, within PFLU_RS06960at 1558.529 kb on - strand, within PFLU_RS06960at 1558.706 kb on - strand, within PFLU_RS06960at 1558.812 kb on - strandat 1558.926 kb on + strandat 1558.926 kb on + strandat 1558.932 kb on + strandat 1558.933 kb on - strandat 1558.985 kb on - strandat 1558.985 kb on - strandat 1559.037 kb on - strandat 1559.037 kb on - strandat 1559.037 kb on - strandat 1559.144 kb on + strand, within PFLU_RS06965at 1559.144 kb on + strand, within PFLU_RS06965at 1559.144 kb on + strand, within PFLU_RS06965at 1559.144 kb on + strand, within PFLU_RS06965at 1559.144 kb on + strand, within PFLU_RS06965at 1559.144 kb on + strand, within PFLU_RS06965at 1559.144 kb on + strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.145 kb on - strand, within PFLU_RS06965at 1559.309 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.558 kb on + strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.559 kb on - strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.562 kb on + strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.563 kb on - strand, within PFLU_RS06965at 1559.684 kb on + strand, within PFLU_RS06965at 1559.685 kb on - strand, within PFLU_RS06965at 1559.685 kb on - strand, within PFLU_RS06965at 1559.685 kb on - strand, within PFLU_RS06965at 1559.768 kb on + strand, within PFLU_RS06965

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); with MOPS
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1,556,814 + PFLU_RS06950 0.75 -0.3
1,556,814 + PFLU_RS06950 0.75 -0.9
1,556,814 + PFLU_RS06950 0.75 -0.5
1,556,814 + PFLU_RS06950 0.75 -0.2
1,556,814 + PFLU_RS06950 0.75 -0.8
1,556,814 + PFLU_RS06950 0.75 -0.5
1,556,814 + PFLU_RS06950 0.75 -1.0
1,556,814 + PFLU_RS06950 0.75 -2.9
1,556,814 + PFLU_RS06950 0.75 -3.3
1,556,814 + PFLU_RS06950 0.75 -2.4
1,556,814 + PFLU_RS06950 0.75 +0.8
1,556,814 + PFLU_RS06950 0.75 -1.4
1,556,814 + PFLU_RS06950 0.75 -0.2
1,556,814 + PFLU_RS06950 0.75 +0.8
1,556,814 + PFLU_RS06950 0.75 +0.1
1,556,814 + PFLU_RS06950 0.75 -0.2
1,556,814 + PFLU_RS06950 0.75 -1.3
1,556,814 + PFLU_RS06950 0.75 -0.1
1,556,815 - PFLU_RS06950 0.75 +0.2
1,556,815 - PFLU_RS06950 0.75 +1.1
1,556,815 - PFLU_RS06950 0.75 -1.9
1,556,815 - PFLU_RS06950 0.75 -1.5
1,556,815 - PFLU_RS06950 0.75 -0.6
1,556,815 - PFLU_RS06950 0.75 -0.0
1,556,815 - PFLU_RS06950 0.75 -1.4
1,556,815 - PFLU_RS06950 0.75 +0.2
1,556,815 - PFLU_RS06950 0.75 +0.9
1,556,815 - PFLU_RS06950 0.75 +0.0
1,556,815 - PFLU_RS06950 0.75 -2.3
1,556,815 - PFLU_RS06950 0.75 +0.2
1,556,815 - PFLU_RS06950 0.75 +0.3
1,556,926 + PFLU_RS06950 0.90 -1.0
1,556,926 + PFLU_RS06950 0.90 +1.4
1,556,926 + PFLU_RS06950 0.90 +0.5
1,556,926 + PFLU_RS06950 0.90 -2.0
1,556,926 + PFLU_RS06950 0.90 +0.3
1,556,927 - PFLU_RS06950 0.90 -0.0
1,556,927 - PFLU_RS06950 0.90 +1.8
1,556,927 - PFLU_RS06950 0.90 +1.1
1,556,927 - PFLU_RS06950 0.90 -0.1
1,556,927 - PFLU_RS06950 0.90 -0.5
1,556,927 - PFLU_RS06950 0.90 +0.9
1,556,927 - PFLU_RS06950 0.90 +0.9
1,556,927 - PFLU_RS06950 0.90 +1.0
1,556,927 - PFLU_RS06950 0.90 -2.4
1,556,993 + -0.9
1,556,993 + -0.1
1,556,994 - +0.5
1,556,994 - +1.0
1,557,144 + -0.4
1,557,252 + PFLU_RS06955 0.16 +0.9
1,557,252 + PFLU_RS06955 0.16 +0.5
1,557,252 + PFLU_RS06955 0.16 -0.4
1,557,252 + PFLU_RS06955 0.16 -2.5
1,557,253 - PFLU_RS06955 0.16 -1.7
1,557,253 - PFLU_RS06955 0.16 -2.0
1,557,253 - PFLU_RS06955 0.16 +0.4
1,557,253 - PFLU_RS06955 0.16 +0.2
1,557,253 - PFLU_RS06955 0.16 -2.4
1,557,253 - PFLU_RS06955 0.16 -0.8
1,557,375 + PFLU_RS06955 0.39 -0.3
1,557,375 + PFLU_RS06955 0.39 -1.4
1,557,375 + PFLU_RS06955 0.39 +0.1
1,557,375 + PFLU_RS06955 0.39 +0.5
1,557,376 - PFLU_RS06955 0.39 +1.1
1,557,474 + PFLU_RS06955 0.58 +0.1
1,557,474 + PFLU_RS06955 0.58 +0.0
1,557,474 + PFLU_RS06955 0.58 +0.7
1,557,475 - PFLU_RS06955 0.58 +0.2
1,557,475 - PFLU_RS06955 0.58 -0.5
1,557,797 + -0.4
1,557,797 + -0.4
1,557,797 + -0.0
1,557,797 + -0.2
1,557,797 + +0.1
1,557,797 + +0.5
1,557,797 + -1.5
1,557,798 - -1.0
1,557,798 - -0.8
1,557,798 - -1.5
1,557,798 - +0.4
1,557,935 + PFLU_RS06960 0.12 -0.5
1,557,936 - PFLU_RS06960 0.12 -2.9
1,558,079 - PFLU_RS06960 0.26 -1.1
1,558,093 + PFLU_RS06960 0.28 -2.9
1,558,093 + PFLU_RS06960 0.28 -0.1
1,558,094 - PFLU_RS06960 0.28 -0.5
1,558,094 - PFLU_RS06960 0.28 -0.2
1,558,094 - PFLU_RS06960 0.28 +0.3
1,558,094 - PFLU_RS06960 0.28 +0.3
1,558,094 - PFLU_RS06960 0.28 +0.8
1,558,094 - PFLU_RS06960 0.28 +1.0
1,558,094 - PFLU_RS06960 0.28 +0.9
1,558,208 + PFLU_RS06960 0.39 +0.8
1,558,208 + PFLU_RS06960 0.39 +0.7
1,558,208 + PFLU_RS06960 0.39 +0.9
1,558,208 + PFLU_RS06960 0.39 +0.5
1,558,208 + PFLU_RS06960 0.39 -0.2
1,558,209 - PFLU_RS06960 0.39 +2.7
1,558,209 - PFLU_RS06960 0.39 +0.5
1,558,209 - PFLU_RS06960 0.39 -2.0
1,558,209 - PFLU_RS06960 0.39 +0.3
1,558,209 - PFLU_RS06960 0.39 +0.5
1,558,209 - PFLU_RS06960 0.39 +0.9
1,558,381 + PFLU_RS06960 0.56 -0.5
1,558,381 + PFLU_RS06960 0.56 +0.5
1,558,381 + PFLU_RS06960 0.56 +0.4
1,558,381 + PFLU_RS06960 0.56 -1.3
1,558,395 + PFLU_RS06960 0.57 -0.1
1,558,396 + PFLU_RS06960 0.57 -1.7
1,558,396 + PFLU_RS06960 0.57 +1.2
1,558,397 - PFLU_RS06960 0.57 +0.5
1,558,397 - PFLU_RS06960 0.57 +0.5
1,558,397 - PFLU_RS06960 0.57 -0.4
1,558,406 + PFLU_RS06960 0.58 -0.7
1,558,407 - PFLU_RS06960 0.58 +0.5
1,558,407 - PFLU_RS06960 0.58 +0.3
1,558,420 + PFLU_RS06960 0.60 +0.3
1,558,420 + PFLU_RS06960 0.60 +0.0
1,558,481 + PFLU_RS06960 0.66 -1.6
1,558,497 - PFLU_RS06960 0.67 -0.2
1,558,525 + PFLU_RS06960 0.70 +0.2
1,558,525 + PFLU_RS06960 0.70 -0.1
1,558,525 + PFLU_RS06960 0.70 +0.6
1,558,526 - PFLU_RS06960 0.70 +2.3
1,558,526 - PFLU_RS06960 0.70 +0.0
1,558,526 - PFLU_RS06960 0.70 -1.0
1,558,528 + PFLU_RS06960 0.70 +0.5
1,558,529 - PFLU_RS06960 0.70 +1.7
1,558,706 - PFLU_RS06960 0.88 -1.5
1,558,812 - +0.4
1,558,926 + -0.4
1,558,926 + +1.7
1,558,932 + -0.7
1,558,933 - -0.1
1,558,985 - +0.1
1,558,985 - -0.6
1,559,037 - -0.9
1,559,037 - +0.1
1,559,037 - +0.2
1,559,144 + PFLU_RS06965 0.16 +0.8
1,559,144 + PFLU_RS06965 0.16 +0.6
1,559,144 + PFLU_RS06965 0.16 -0.5
1,559,144 + PFLU_RS06965 0.16 -0.1
1,559,144 + PFLU_RS06965 0.16 -1.8
1,559,144 + PFLU_RS06965 0.16 -0.2
1,559,144 + PFLU_RS06965 0.16 -0.3
1,559,145 - PFLU_RS06965 0.17 +0.5
1,559,145 - PFLU_RS06965 0.17 +0.4
1,559,145 - PFLU_RS06965 0.17 +0.4
1,559,145 - PFLU_RS06965 0.17 +0.3
1,559,145 - PFLU_RS06965 0.17 +0.3
1,559,145 - PFLU_RS06965 0.17 +0.5
1,559,145 - PFLU_RS06965 0.17 -0.2
1,559,145 - PFLU_RS06965 0.17 +0.8
1,559,309 + PFLU_RS06965 0.31 -1.1
1,559,558 + PFLU_RS06965 0.52 +0.5
1,559,558 + PFLU_RS06965 0.52 -0.7
1,559,558 + PFLU_RS06965 0.52 -0.1
1,559,558 + PFLU_RS06965 0.52 +0.5
1,559,558 + PFLU_RS06965 0.52 -0.9
1,559,558 + PFLU_RS06965 0.52 +1.4
1,559,558 + PFLU_RS06965 0.52 -0.1
1,559,558 + PFLU_RS06965 0.52 -0.3
1,559,558 + PFLU_RS06965 0.52 +1.0
1,559,558 + PFLU_RS06965 0.52 -0.5
1,559,558 + PFLU_RS06965 0.52 +0.7
1,559,558 + PFLU_RS06965 0.52 -2.5
1,559,558 + PFLU_RS06965 0.52 -0.2
1,559,559 - PFLU_RS06965 0.53 -2.8
1,559,559 - PFLU_RS06965 0.53 +1.4
1,559,559 - PFLU_RS06965 0.53 -0.0
1,559,559 - PFLU_RS06965 0.53 +1.1
1,559,559 - PFLU_RS06965 0.53 +0.4
1,559,559 - PFLU_RS06965 0.53 -0.9
1,559,559 - PFLU_RS06965 0.53 -1.3
1,559,559 - PFLU_RS06965 0.53 +1.1
1,559,559 - PFLU_RS06965 0.53 -0.2
1,559,559 - PFLU_RS06965 0.53 -0.1
1,559,559 - PFLU_RS06965 0.53 -0.8
1,559,559 - PFLU_RS06965 0.53 +1.1
1,559,562 + PFLU_RS06965 0.53 -0.5
1,559,562 + PFLU_RS06965 0.53 -0.5
1,559,562 + PFLU_RS06965 0.53 -0.9
1,559,562 + PFLU_RS06965 0.53 -0.4
1,559,562 + PFLU_RS06965 0.53 +0.9
1,559,562 + PFLU_RS06965 0.53 -2.4
1,559,562 + PFLU_RS06965 0.53 -0.6
1,559,562 + PFLU_RS06965 0.53 -0.9
1,559,562 + PFLU_RS06965 0.53 -0.0
1,559,563 - PFLU_RS06965 0.53 +0.5
1,559,563 - PFLU_RS06965 0.53 +0.6
1,559,563 - PFLU_RS06965 0.53 -0.4
1,559,563 - PFLU_RS06965 0.53 -0.3
1,559,563 - PFLU_RS06965 0.53 +3.4
1,559,563 - PFLU_RS06965 0.53 -1.8
1,559,563 - PFLU_RS06965 0.53 -0.5
1,559,563 - PFLU_RS06965 0.53 -0.5
1,559,563 - PFLU_RS06965 0.53 +0.2
1,559,684 + PFLU_RS06965 0.63 -0.7
1,559,685 - PFLU_RS06965 0.64 -1.5
1,559,685 - PFLU_RS06965 0.64 +1.1
1,559,685 - PFLU_RS06965 0.64 +0.9
1,559,768 + PFLU_RS06965 0.71 +1.9

Or see this region's nucleotide sequence