Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS01125

Experiment: D-Glucose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01120 and PFLU_RS01125 overlap by 20 nucleotidesPFLU_RS01125 and PFLU_RS01130 overlap by 4 nucleotidesPFLU_RS01130 and PFLU_RS01135 overlap by 4 nucleotides PFLU_RS01120: PFLU_RS01120 - amino acid ABC transporter permease, at 246,614 to 247,279 _RS01120 PFLU_RS01125: PFLU_RS01125 - amino acid ABC transporter permease, at 247,260 to 247,919 _RS01125 PFLU_RS01130: PFLU_RS01130 - amino acid ABC transporter ATP-binding protein, at 247,916 to 248,692 _RS01130 PFLU_RS01135: PFLU_RS01135 - transporter substrate-binding domain-containing protein, at 248,689 to 249,543 _RS01135 Position (kb) 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 246.325 kb on + strandat 246.331 kb on + strandat 246.331 kb on + strandat 246.331 kb on + strandat 246.331 kb on + strandat 246.331 kb on + strandat 246.331 kb on + strandat 246.332 kb on - strandat 246.332 kb on - strandat 246.332 kb on - strandat 246.332 kb on - strandat 246.332 kb on - strandat 246.332 kb on - strandat 246.332 kb on - strandat 246.332 kb on - strandat 246.404 kb on + strandat 246.405 kb on - strandat 246.405 kb on - strandat 246.421 kb on + strandat 246.421 kb on + strandat 246.422 kb on - strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.438 kb on + strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.439 kb on - strandat 246.474 kb on - strandat 246.500 kb on - strandat 246.504 kb on - strandat 246.589 kb on - strandat 246.589 kb on - strandat 246.634 kb on + strandat 246.661 kb on - strandat 246.661 kb on - strandat 246.761 kb on + strand, within PFLU_RS01120at 246.762 kb on - strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.785 kb on + strand, within PFLU_RS01120at 246.786 kb on - strand, within PFLU_RS01120at 246.786 kb on - strand, within PFLU_RS01120at 246.786 kb on - strand, within PFLU_RS01120at 246.786 kb on - strand, within PFLU_RS01120at 246.786 kb on - strand, within PFLU_RS01120at 246.836 kb on + strand, within PFLU_RS01120at 246.836 kb on + strand, within PFLU_RS01120at 246.836 kb on + strand, within PFLU_RS01120at 246.865 kb on + strand, within PFLU_RS01120at 246.866 kb on - strand, within PFLU_RS01120at 246.866 kb on - strand, within PFLU_RS01120at 246.866 kb on - strand, within PFLU_RS01120at 246.917 kb on + strand, within PFLU_RS01120at 247.130 kb on + strand, within PFLU_RS01120at 247.145 kb on + strand, within PFLU_RS01120at 247.145 kb on + strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.157 kb on + strand, within PFLU_RS01120at 247.158 kb on - strand, within PFLU_RS01120at 247.158 kb on - strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.170 kb on - strand, within PFLU_RS01120at 247.362 kb on - strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.427 kb on - strand, within PFLU_RS01125at 247.434 kb on + strand, within PFLU_RS01125at 247.434 kb on + strand, within PFLU_RS01125at 247.434 kb on + strand, within PFLU_RS01125at 247.435 kb on - strand, within PFLU_RS01125at 247.435 kb on - strand, within PFLU_RS01125at 247.435 kb on - strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.662 kb on + strand, within PFLU_RS01125at 247.663 kb on - strand, within PFLU_RS01125at 247.663 kb on - strand, within PFLU_RS01125at 247.669 kb on - strand, within PFLU_RS01125at 247.782 kb on - strand, within PFLU_RS01125at 247.782 kb on - strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.831 kb on - strand, within PFLU_RS01125at 247.859 kb on + strandat 247.859 kb on + strandat 247.859 kb on + strandat 247.859 kb on + strandat 247.860 kb on - strandat 247.860 kb on - strandat 248.180 kb on + strand, within PFLU_RS01130at 248.180 kb on + strand, within PFLU_RS01130at 248.180 kb on + strand, within PFLU_RS01130at 248.295 kb on + strand, within PFLU_RS01130at 248.296 kb on - strand, within PFLU_RS01130at 248.596 kb on + strand, within PFLU_RS01130at 248.596 kb on + strand, within PFLU_RS01130at 248.596 kb on + strand, within PFLU_RS01130at 248.597 kb on - strand, within PFLU_RS01130at 248.597 kb on - strand, within PFLU_RS01130at 248.689 kb on - strandat 248.689 kb on - strandat 248.689 kb on - strandat 248.699 kb on + strandat 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.878 kb on + strand, within PFLU_RS01135at 248.878 kb on + strand, within PFLU_RS01135at 248.878 kb on + strand, within PFLU_RS01135at 248.878 kb on + strand, within PFLU_RS01135at 248.879 kb on - strand, within PFLU_RS01135at 248.879 kb on - strand, within PFLU_RS01135

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); with MOPS
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246,325 + -0.0
246,331 + +0.9
246,331 + -0.9
246,331 + +0.0
246,331 + +0.5
246,331 + -0.5
246,331 + +1.0
246,332 - -0.4
246,332 - +1.0
246,332 - -1.1
246,332 - +0.5
246,332 - -1.5
246,332 - -2.1
246,332 - +0.1
246,332 - +1.2
246,404 + +0.5
246,405 - -0.7
246,405 - -0.9
246,421 + +1.1
246,421 + -0.3
246,422 - -1.5
246,438 + -1.9
246,438 + +0.0
246,438 + +0.6
246,438 + -1.9
246,438 + -0.2
246,438 + +0.1
246,438 + +1.0
246,438 + -0.0
246,438 + -0.8
246,438 + -1.0
246,438 + -0.4
246,438 + -1.1
246,438 + -1.3
246,439 - +0.0
246,439 - -1.0
246,439 - -1.0
246,439 - -0.5
246,439 - +0.1
246,439 - -1.5
246,439 - -1.3
246,439 - -0.5
246,439 - +0.4
246,439 - -0.8
246,439 - +0.3
246,439 - -0.0
246,439 - -0.9
246,439 - -0.9
246,474 - +0.3
246,500 - +1.7
246,504 - +0.1
246,589 - +1.8
246,589 - +0.1
246,634 + +0.5
246,661 - +1.9
246,661 - -0.1
246,761 + PFLU_RS01120 0.22 -1.1
246,762 - PFLU_RS01120 0.22 -0.8
246,785 + PFLU_RS01120 0.26 +0.2
246,785 + PFLU_RS01120 0.26 -0.8
246,785 + PFLU_RS01120 0.26 -0.0
246,785 + PFLU_RS01120 0.26 +0.4
246,785 + PFLU_RS01120 0.26 +0.9
246,785 + PFLU_RS01120 0.26 +0.6
246,785 + PFLU_RS01120 0.26 -1.1
246,785 + PFLU_RS01120 0.26 -1.2
246,785 + PFLU_RS01120 0.26 +0.4
246,786 - PFLU_RS01120 0.26 +0.4
246,786 - PFLU_RS01120 0.26 +0.2
246,786 - PFLU_RS01120 0.26 -0.1
246,786 - PFLU_RS01120 0.26 +0.4
246,786 - PFLU_RS01120 0.26 +0.9
246,836 + PFLU_RS01120 0.33 +0.5
246,836 + PFLU_RS01120 0.33 +0.1
246,836 + PFLU_RS01120 0.33 -2.3
246,865 + PFLU_RS01120 0.38 +0.3
246,866 - PFLU_RS01120 0.38 +0.2
246,866 - PFLU_RS01120 0.38 +2.0
246,866 - PFLU_RS01120 0.38 -0.3
246,917 + PFLU_RS01120 0.45 -0.0
247,130 + PFLU_RS01120 0.77 +1.0
247,145 + PFLU_RS01120 0.80 -0.2
247,145 + PFLU_RS01120 0.80 -0.1
247,146 - PFLU_RS01120 0.80 -0.4
247,146 - PFLU_RS01120 0.80 +1.7
247,146 - PFLU_RS01120 0.80 +0.2
247,146 - PFLU_RS01120 0.80 -0.0
247,157 + PFLU_RS01120 0.82 -0.5
247,158 - PFLU_RS01120 0.82 +0.4
247,158 - PFLU_RS01120 0.82 +0.4
247,160 + PFLU_RS01120 0.82 +0.1
247,160 + PFLU_RS01120 0.82 +0.3
247,161 - PFLU_RS01120 0.82 +0.2
247,161 - PFLU_RS01120 0.82 +1.9
247,161 - PFLU_RS01120 0.82 +0.3
247,161 - PFLU_RS01120 0.82 -0.9
247,170 - PFLU_RS01120 0.83 +0.4
247,362 - PFLU_RS01125 0.15 +1.6
247,380 + PFLU_RS01125 0.18 +0.8
247,380 + PFLU_RS01125 0.18 -1.2
247,380 + PFLU_RS01125 0.18 -0.4
247,380 + PFLU_RS01125 0.18 +0.5
247,380 + PFLU_RS01125 0.18 -0.4
247,381 - PFLU_RS01125 0.18 -0.6
247,381 - PFLU_RS01125 0.18 -0.1
247,381 - PFLU_RS01125 0.18 +1.4
247,381 - PFLU_RS01125 0.18 +0.8
247,381 - PFLU_RS01125 0.18 +1.2
247,381 - PFLU_RS01125 0.18 +0.7
247,427 - PFLU_RS01125 0.25 -0.8
247,434 + PFLU_RS01125 0.26 -1.4
247,434 + PFLU_RS01125 0.26 -0.2
247,434 + PFLU_RS01125 0.26 +0.2
247,435 - PFLU_RS01125 0.27 -0.6
247,435 - PFLU_RS01125 0.27 -1.1
247,435 - PFLU_RS01125 0.27 +0.4
247,476 + PFLU_RS01125 0.33 -1.1
247,476 + PFLU_RS01125 0.33 -0.2
247,476 + PFLU_RS01125 0.33 -3.0
247,476 + PFLU_RS01125 0.33 +0.5
247,476 + PFLU_RS01125 0.33 +0.4
247,476 + PFLU_RS01125 0.33 +0.4
247,477 - PFLU_RS01125 0.33 +0.6
247,477 - PFLU_RS01125 0.33 +1.5
247,477 - PFLU_RS01125 0.33 +0.2
247,477 - PFLU_RS01125 0.33 +0.7
247,662 + PFLU_RS01125 0.61 +0.2
247,663 - PFLU_RS01125 0.61 +1.1
247,663 - PFLU_RS01125 0.61 -0.5
247,669 - PFLU_RS01125 0.62 -0.1
247,782 - PFLU_RS01125 0.79 +0.4
247,782 - PFLU_RS01125 0.79 +0.9
247,812 + PFLU_RS01125 0.84 -2.2
247,812 + PFLU_RS01125 0.84 -0.1
247,812 + PFLU_RS01125 0.84 -2.3
247,812 + PFLU_RS01125 0.84 -0.5
247,812 + PFLU_RS01125 0.84 +1.7
247,812 + PFLU_RS01125 0.84 -0.1
247,812 + PFLU_RS01125 0.84 +1.3
247,812 + PFLU_RS01125 0.84 -0.6
247,812 + PFLU_RS01125 0.84 +0.3
247,813 - PFLU_RS01125 0.84 -0.5
247,813 - PFLU_RS01125 0.84 -0.7
247,813 - PFLU_RS01125 0.84 +0.4
247,813 - PFLU_RS01125 0.84 -2.3
247,813 - PFLU_RS01125 0.84 +0.6
247,831 - PFLU_RS01125 0.87 -0.9
247,859 + +0.7
247,859 + +1.2
247,859 + -0.6
247,859 + +1.0
247,860 - -0.2
247,860 - +0.2
248,180 + PFLU_RS01130 0.34 -0.5
248,180 + PFLU_RS01130 0.34 +0.3
248,180 + PFLU_RS01130 0.34 -0.9
248,295 + PFLU_RS01130 0.49 -0.6
248,296 - PFLU_RS01130 0.49 +1.3
248,596 + PFLU_RS01130 0.88 -0.8
248,596 + PFLU_RS01130 0.88 -0.2
248,596 + PFLU_RS01130 0.88 +1.8
248,597 - PFLU_RS01130 0.88 +1.7
248,597 - PFLU_RS01130 0.88 +1.1
248,689 - -0.8
248,689 - -2.3
248,689 - +0.3
248,699 + -0.9
248,788 + PFLU_RS01135 0.12 +1.0
248,788 + PFLU_RS01135 0.12 +0.2
248,788 + PFLU_RS01135 0.12 +1.0
248,788 + PFLU_RS01135 0.12 -0.4
248,788 + PFLU_RS01135 0.12 +0.2
248,788 + PFLU_RS01135 0.12 +0.5
248,788 + PFLU_RS01135 0.12 +0.5
248,788 + PFLU_RS01135 0.12 +1.0
248,788 + PFLU_RS01135 0.12 +0.3
248,789 - PFLU_RS01135 0.12 -1.8
248,789 - PFLU_RS01135 0.12 -0.4
248,789 - PFLU_RS01135 0.12 -0.4
248,789 - PFLU_RS01135 0.12 +0.7
248,789 - PFLU_RS01135 0.12 +1.8
248,789 - PFLU_RS01135 0.12 -0.4
248,789 - PFLU_RS01135 0.12 +0.9
248,789 - PFLU_RS01135 0.12 +0.6
248,789 - PFLU_RS01135 0.12 -0.5
248,789 - PFLU_RS01135 0.12 +1.3
248,789 - PFLU_RS01135 0.12 -0.3
248,789 - PFLU_RS01135 0.12 +0.5
248,789 - PFLU_RS01135 0.12 +0.9
248,789 - PFLU_RS01135 0.12 +1.1
248,789 - PFLU_RS01135 0.12 +1.4
248,878 + PFLU_RS01135 0.22 -0.9
248,878 + PFLU_RS01135 0.22 -1.1
248,878 + PFLU_RS01135 0.22 +0.3
248,878 + PFLU_RS01135 0.22 +0.0
248,879 - PFLU_RS01135 0.22 -2.4
248,879 - PFLU_RS01135 0.22 +0.7

Or see this region's nucleotide sequence