Strain Fitness in Pseudomonas sp. S08-1 around OH686_23880

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23875 and OH686_23880 are separated by 59 nucleotidesOH686_23880 and OH686_23885 are separated by 94 nucleotides OH686_23875: OH686_23875 - Putative short-chain dehydrogenase, at 4,836,433 to 4,837,221 _23875 OH686_23880: OH686_23880 - Transcriptional regulator, AcrR family, at 4,837,281 to 4,837,844 _23880 OH686_23885: OH686_23885 - 3-ketoacyl-CoA thiolase 2 [fadN-fadA-fadE operon] , at 4,837,939 to 4,839,069 _23885 Position (kb) 4837 4838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4836.295 kb on + strandat 4836.296 kb on - strandat 4836.317 kb on + strandat 4836.317 kb on + strandat 4836.317 kb on + strandat 4836.317 kb on + strandat 4836.318 kb on - strandat 4836.329 kb on - strandat 4836.329 kb on - strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.336 kb on + strandat 4836.337 kb on - strandat 4836.337 kb on - strandat 4836.337 kb on - strandat 4836.337 kb on - strandat 4836.337 kb on - strandat 4836.337 kb on - strandat 4836.337 kb on - strandat 4836.337 kb on - strandat 4836.352 kb on + strandat 4836.409 kb on + strandat 4836.490 kb on + strandat 4836.490 kb on + strandat 4836.490 kb on + strandat 4836.490 kb on + strandat 4836.490 kb on + strandat 4836.491 kb on - strandat 4836.491 kb on - strandat 4836.491 kb on - strandat 4836.491 kb on - strandat 4836.491 kb on - strandat 4836.491 kb on - strandat 4836.491 kb on - strandat 4836.491 kb on - strandat 4836.586 kb on + strand, within OH686_23875at 4836.586 kb on + strand, within OH686_23875at 4836.768 kb on + strand, within OH686_23875at 4836.855 kb on - strand, within OH686_23875at 4836.889 kb on + strand, within OH686_23875at 4836.889 kb on + strand, within OH686_23875at 4836.889 kb on + strand, within OH686_23875at 4836.889 kb on + strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.890 kb on - strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.907 kb on + strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.908 kb on - strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.911 kb on + strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4836.912 kb on - strand, within OH686_23875at 4837.210 kb on + strandat 4837.210 kb on + strandat 4837.210 kb on + strandat 4837.210 kb on + strandat 4837.211 kb on - strandat 4837.211 kb on - strandat 4837.233 kb on + strandat 4837.233 kb on + strandat 4837.233 kb on + strandat 4837.234 kb on - strandat 4837.234 kb on - strandat 4837.234 kb on - strandat 4837.234 kb on - strandat 4837.576 kb on + strand, within OH686_23880at 4837.577 kb on - strand, within OH686_23880at 4837.702 kb on + strand, within OH686_23880at 4837.702 kb on + strand, within OH686_23880at 4837.703 kb on - strand, within OH686_23880at 4837.703 kb on - strand, within OH686_23880at 4837.703 kb on - strand, within OH686_23880at 4837.703 kb on - strand, within OH686_23880at 4837.703 kb on - strand, within OH686_23880at 4837.703 kb on - strand, within OH686_23880at 4837.837 kb on + strandat 4837.837 kb on + strandat 4837.838 kb on - strandat 4837.888 kb on + strandat 4837.889 kb on - strandat 4838.519 kb on + strand, within OH686_23885at 4838.519 kb on + strand, within OH686_23885at 4838.520 kb on - strand, within OH686_23885at 4838.637 kb on + strand, within OH686_23885at 4838.637 kb on + strand, within OH686_23885at 4838.637 kb on + strand, within OH686_23885at 4838.638 kb on - strand, within OH686_23885at 4838.638 kb on - strand, within OH686_23885at 4838.638 kb on - strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.639 kb on + strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.640 kb on - strand, within OH686_23885at 4838.680 kb on + strand, within OH686_23885at 4838.680 kb on + strand, within OH686_23885at 4838.680 kb on + strand, within OH686_23885at 4838.680 kb on + strand, within OH686_23885at 4838.680 kb on + strand, within OH686_23885at 4838.680 kb on + strand, within OH686_23885at 4838.680 kb on + strand, within OH686_23885at 4838.681 kb on - strand, within OH686_23885at 4838.681 kb on - strand, within OH686_23885at 4838.681 kb on - strand, within OH686_23885at 4838.681 kb on - strand, within OH686_23885at 4838.681 kb on - strand, within OH686_23885at 4838.681 kb on - strand, within OH686_23885at 4838.681 kb on - strand, within OH686_23885

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,836,295 + -0.8
4,836,296 - +0.3
4,836,317 + -2.1
4,836,317 + +0.2
4,836,317 + -2.3
4,836,317 + +0.8
4,836,318 - +1.3
4,836,329 - +1.2
4,836,329 - +0.7
4,836,336 + +0.6
4,836,336 + +2.1
4,836,336 + -2.3
4,836,336 + -1.0
4,836,336 + +1.1
4,836,336 + +1.0
4,836,336 + +0.2
4,836,336 + -0.5
4,836,336 + -1.6
4,836,336 + -2.4
4,836,336 + -0.1
4,836,336 + -2.6
4,836,337 - -0.0
4,836,337 - -1.7
4,836,337 - +0.2
4,836,337 - -0.6
4,836,337 - -3.3
4,836,337 - -0.9
4,836,337 - +0.2
4,836,337 - +2.0
4,836,352 + -0.3
4,836,409 + -0.1
4,836,490 + -1.5
4,836,490 + +0.8
4,836,490 + +2.4
4,836,490 + -1.0
4,836,490 + +1.7
4,836,491 - +0.7
4,836,491 - +0.8
4,836,491 - -2.0
4,836,491 - -0.9
4,836,491 - -0.3
4,836,491 - -0.3
4,836,491 - +1.0
4,836,491 - -0.7
4,836,586 + OH686_23875 0.19 -2.0
4,836,586 + OH686_23875 0.19 -1.1
4,836,768 + OH686_23875 0.42 +1.6
4,836,855 - OH686_23875 0.53 -1.0
4,836,889 + OH686_23875 0.58 -0.1
4,836,889 + OH686_23875 0.58 -1.3
4,836,889 + OH686_23875 0.58 +0.9
4,836,889 + OH686_23875 0.58 -1.0
4,836,890 - OH686_23875 0.58 -0.2
4,836,890 - OH686_23875 0.58 +2.0
4,836,890 - OH686_23875 0.58 +1.0
4,836,890 - OH686_23875 0.58 -1.3
4,836,890 - OH686_23875 0.58 +2.5
4,836,890 - OH686_23875 0.58 -2.7
4,836,890 - OH686_23875 0.58 -1.4
4,836,890 - OH686_23875 0.58 +0.4
4,836,890 - OH686_23875 0.58 +0.4
4,836,890 - OH686_23875 0.58 -3.4
4,836,890 - OH686_23875 0.58 +0.3
4,836,890 - OH686_23875 0.58 +0.1
4,836,890 - OH686_23875 0.58 +1.7
4,836,907 + OH686_23875 0.60 -3.4
4,836,907 + OH686_23875 0.60 +0.6
4,836,907 + OH686_23875 0.60 -1.4
4,836,907 + OH686_23875 0.60 +0.1
4,836,907 + OH686_23875 0.60 +0.4
4,836,907 + OH686_23875 0.60 -2.3
4,836,907 + OH686_23875 0.60 -0.2
4,836,907 + OH686_23875 0.60 +0.1
4,836,907 + OH686_23875 0.60 +1.1
4,836,907 + OH686_23875 0.60 +0.7
4,836,908 - OH686_23875 0.60 -1.1
4,836,908 - OH686_23875 0.60 -1.5
4,836,908 - OH686_23875 0.60 +0.3
4,836,908 - OH686_23875 0.60 +1.4
4,836,908 - OH686_23875 0.60 +2.3
4,836,908 - OH686_23875 0.60 +0.6
4,836,908 - OH686_23875 0.60 +1.2
4,836,908 - OH686_23875 0.60 +0.5
4,836,908 - OH686_23875 0.60 +1.9
4,836,908 - OH686_23875 0.60 -2.7
4,836,908 - OH686_23875 0.60 +0.3
4,836,911 + OH686_23875 0.61 -3.5
4,836,911 + OH686_23875 0.61 +0.1
4,836,911 + OH686_23875 0.61 -3.8
4,836,911 + OH686_23875 0.61 -2.2
4,836,911 + OH686_23875 0.61 +1.7
4,836,911 + OH686_23875 0.61 -3.4
4,836,911 + OH686_23875 0.61 -1.0
4,836,911 + OH686_23875 0.61 -0.6
4,836,911 + OH686_23875 0.61 -1.6
4,836,911 + OH686_23875 0.61 -2.3
4,836,911 + OH686_23875 0.61 -3.6
4,836,911 + OH686_23875 0.61 -2.7
4,836,911 + OH686_23875 0.61 -1.4
4,836,911 + OH686_23875 0.61 -0.3
4,836,911 + OH686_23875 0.61 +0.4
4,836,911 + OH686_23875 0.61 -2.3
4,836,911 + OH686_23875 0.61 +0.6
4,836,911 + OH686_23875 0.61 +0.1
4,836,912 - OH686_23875 0.61 -1.9
4,836,912 - OH686_23875 0.61 +0.3
4,836,912 - OH686_23875 0.61 -2.8
4,836,912 - OH686_23875 0.61 -2.8
4,836,912 - OH686_23875 0.61 -1.0
4,836,912 - OH686_23875 0.61 -0.2
4,836,912 - OH686_23875 0.61 +1.4
4,836,912 - OH686_23875 0.61 +0.8
4,836,912 - OH686_23875 0.61 +1.2
4,836,912 - OH686_23875 0.61 -1.3
4,836,912 - OH686_23875 0.61 -2.4
4,836,912 - OH686_23875 0.61 +0.5
4,836,912 - OH686_23875 0.61 +0.7
4,837,210 + -1.9
4,837,210 + +0.7
4,837,210 + -1.8
4,837,210 + -0.6
4,837,211 - -2.8
4,837,211 - +0.7
4,837,233 + -1.5
4,837,233 + +0.2
4,837,233 + +1.9
4,837,234 - +0.9
4,837,234 - +1.4
4,837,234 - +0.4
4,837,234 - +2.0
4,837,576 + OH686_23880 0.52 -2.2
4,837,577 - OH686_23880 0.52 -2.6
4,837,702 + OH686_23880 0.75 -0.8
4,837,702 + OH686_23880 0.75 -0.6
4,837,703 - OH686_23880 0.75 -2.3
4,837,703 - OH686_23880 0.75 -3.4
4,837,703 - OH686_23880 0.75 -0.9
4,837,703 - OH686_23880 0.75 -2.5
4,837,703 - OH686_23880 0.75 -4.1
4,837,703 - OH686_23880 0.75 +0.2
4,837,837 + -1.9
4,837,837 + -2.7
4,837,838 - -2.1
4,837,888 + -2.8
4,837,889 - -0.7
4,838,519 + OH686_23885 0.51 +0.3
4,838,519 + OH686_23885 0.51 -1.7
4,838,520 - OH686_23885 0.51 +1.1
4,838,637 + OH686_23885 0.62 -1.0
4,838,637 + OH686_23885 0.62 +0.8
4,838,637 + OH686_23885 0.62 -0.1
4,838,638 - OH686_23885 0.62 +0.5
4,838,638 - OH686_23885 0.62 +1.8
4,838,638 - OH686_23885 0.62 -0.6
4,838,639 + OH686_23885 0.62 -1.9
4,838,639 + OH686_23885 0.62 -0.4
4,838,639 + OH686_23885 0.62 +0.4
4,838,639 + OH686_23885 0.62 +2.9
4,838,639 + OH686_23885 0.62 +1.1
4,838,639 + OH686_23885 0.62 +1.4
4,838,639 + OH686_23885 0.62 +0.2
4,838,639 + OH686_23885 0.62 +0.8
4,838,639 + OH686_23885 0.62 -1.2
4,838,639 + OH686_23885 0.62 -1.0
4,838,639 + OH686_23885 0.62 -0.6
4,838,639 + OH686_23885 0.62 -0.4
4,838,639 + OH686_23885 0.62 +1.8
4,838,639 + OH686_23885 0.62 -2.6
4,838,639 + OH686_23885 0.62 +0.8
4,838,639 + OH686_23885 0.62 +1.2
4,838,639 + OH686_23885 0.62 +0.3
4,838,639 + OH686_23885 0.62 +1.0
4,838,639 + OH686_23885 0.62 -0.7
4,838,639 + OH686_23885 0.62 +2.9
4,838,639 + OH686_23885 0.62 +0.0
4,838,639 + OH686_23885 0.62 +2.3
4,838,639 + OH686_23885 0.62 -4.2
4,838,640 - OH686_23885 0.62 -1.9
4,838,640 - OH686_23885 0.62 +0.7
4,838,640 - OH686_23885 0.62 +0.8
4,838,640 - OH686_23885 0.62 -1.4
4,838,640 - OH686_23885 0.62 +0.8
4,838,640 - OH686_23885 0.62 -2.1
4,838,640 - OH686_23885 0.62 +2.3
4,838,640 - OH686_23885 0.62 -1.0
4,838,640 - OH686_23885 0.62 -3.8
4,838,640 - OH686_23885 0.62 -3.2
4,838,640 - OH686_23885 0.62 -1.6
4,838,640 - OH686_23885 0.62 -1.0
4,838,640 - OH686_23885 0.62 -0.9
4,838,640 - OH686_23885 0.62 +0.6
4,838,640 - OH686_23885 0.62 -0.0
4,838,640 - OH686_23885 0.62 +3.0
4,838,640 - OH686_23885 0.62 +0.2
4,838,640 - OH686_23885 0.62 +0.7
4,838,640 - OH686_23885 0.62 +0.3
4,838,680 + OH686_23885 0.66 +0.2
4,838,680 + OH686_23885 0.66 -0.6
4,838,680 + OH686_23885 0.66 -0.8
4,838,680 + OH686_23885 0.66 +1.9
4,838,680 + OH686_23885 0.66 -1.6
4,838,680 + OH686_23885 0.66 +0.1
4,838,680 + OH686_23885 0.66 -0.2
4,838,681 - OH686_23885 0.66 +1.1
4,838,681 - OH686_23885 0.66 -0.7
4,838,681 - OH686_23885 0.66 -0.3
4,838,681 - OH686_23885 0.66 -1.3
4,838,681 - OH686_23885 0.66 -0.5
4,838,681 - OH686_23885 0.66 -2.8
4,838,681 - OH686_23885 0.66 +0.9

Or see this region's nucleotide sequence