Strain Fitness in Pseudomonas sp. S08-1 around OH686_13515

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13510 and OH686_13515 are separated by 93 nucleotidesOH686_13515 and OH686_13520 overlap by 4 nucleotidesOH686_13520 and OH686_13525 are separated by 3 nucleotides OH686_13510: OH686_13510 - Hydrogen peroxide-inducible genes activator, at 2,838,002 to 2,838,934 _13510 OH686_13515: OH686_13515 - hypothetical protein, at 2,839,028 to 2,839,741 _13515 OH686_13520: OH686_13520 - TonB system transport protein ExbD, at 2,839,738 to 2,840,163 _13520 OH686_13525: OH686_13525 - tonB-system energizer ExbB, at 2,840,167 to 2,841,213 _13525 Position (kb) 2839 2840Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2838.171 kb on + strand, within OH686_13510at 2838.200 kb on + strand, within OH686_13510at 2838.200 kb on + strand, within OH686_13510at 2838.298 kb on + strand, within OH686_13510at 2838.298 kb on + strand, within OH686_13510at 2838.453 kb on + strand, within OH686_13510at 2838.453 kb on + strand, within OH686_13510at 2838.453 kb on + strand, within OH686_13510at 2838.453 kb on + strand, within OH686_13510at 2838.453 kb on + strand, within OH686_13510at 2838.567 kb on + strand, within OH686_13510at 2838.567 kb on + strand, within OH686_13510at 2838.568 kb on - strand, within OH686_13510at 2838.568 kb on - strand, within OH686_13510at 2838.568 kb on - strand, within OH686_13510at 2838.568 kb on - strand, within OH686_13510at 2838.568 kb on - strand, within OH686_13510at 2838.625 kb on - strand, within OH686_13510at 2838.625 kb on - strand, within OH686_13510at 2838.625 kb on - strand, within OH686_13510at 2838.639 kb on + strand, within OH686_13510at 2838.639 kb on + strand, within OH686_13510at 2838.639 kb on + strand, within OH686_13510at 2838.639 kb on + strand, within OH686_13510at 2838.639 kb on + strand, within OH686_13510at 2838.639 kb on + strand, within OH686_13510at 2838.640 kb on - strand, within OH686_13510at 2838.640 kb on - strand, within OH686_13510at 2838.640 kb on - strand, within OH686_13510at 2838.640 kb on - strand, within OH686_13510at 2838.640 kb on - strand, within OH686_13510at 2838.640 kb on - strand, within OH686_13510at 2838.640 kb on - strand, within OH686_13510at 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.908 kb on + strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.909 kb on - strandat 2838.912 kb on + strandat 2838.912 kb on + strandat 2838.912 kb on + strandat 2838.912 kb on + strandat 2838.912 kb on + strandat 2838.912 kb on + strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.913 kb on - strandat 2838.934 kb on + strandat 2838.934 kb on + strandat 2838.974 kb on + strandat 2838.975 kb on - strandat 2839.003 kb on - strandat 2839.829 kb on + strand, within OH686_13520

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,838,171 + OH686_13510 0.18 -0.0
2,838,200 + OH686_13510 0.21 +0.3
2,838,200 + OH686_13510 0.21 -0.0
2,838,298 + OH686_13510 0.32 -0.3
2,838,298 + OH686_13510 0.32 -0.0
2,838,453 + OH686_13510 0.48 -0.0
2,838,453 + OH686_13510 0.48 -0.5
2,838,453 + OH686_13510 0.48 +0.3
2,838,453 + OH686_13510 0.48 -0.5
2,838,453 + OH686_13510 0.48 -0.5
2,838,567 + OH686_13510 0.61 -1.7
2,838,567 + OH686_13510 0.61 -0.0
2,838,568 - OH686_13510 0.61 -0.7
2,838,568 - OH686_13510 0.61 -0.5
2,838,568 - OH686_13510 0.61 -2.0
2,838,568 - OH686_13510 0.61 +0.3
2,838,568 - OH686_13510 0.61 -1.9
2,838,625 - OH686_13510 0.67 +1.0
2,838,625 - OH686_13510 0.67 -0.7
2,838,625 - OH686_13510 0.67 +0.3
2,838,639 + OH686_13510 0.68 -1.4
2,838,639 + OH686_13510 0.68 +0.3
2,838,639 + OH686_13510 0.68 -1.8
2,838,639 + OH686_13510 0.68 -2.4
2,838,639 + OH686_13510 0.68 +1.6
2,838,639 + OH686_13510 0.68 +4.3
2,838,640 - OH686_13510 0.68 -0.5
2,838,640 - OH686_13510 0.68 -2.8
2,838,640 - OH686_13510 0.68 +1.5
2,838,640 - OH686_13510 0.68 +1.8
2,838,640 - OH686_13510 0.68 -1.1
2,838,640 - OH686_13510 0.68 +1.5
2,838,640 - OH686_13510 0.68 +2.0
2,838,908 + -1.7
2,838,908 + -0.7
2,838,908 + +3.3
2,838,908 + +3.8
2,838,908 + +0.1
2,838,908 + -0.5
2,838,908 + -0.3
2,838,908 + -1.3
2,838,908 + -0.0
2,838,908 + +1.6
2,838,908 + -1.5
2,838,908 + -1.4
2,838,908 + -1.4
2,838,908 + -1.5
2,838,908 + -2.0
2,838,908 + +4.2
2,838,908 + -2.7
2,838,908 + -0.3
2,838,908 + +0.0
2,838,908 + -1.0
2,838,908 + -0.0
2,838,908 + +0.3
2,838,908 + +0.6
2,838,909 - +0.3
2,838,909 - +3.8
2,838,909 - +0.8
2,838,909 - -0.9
2,838,909 - -1.9
2,838,909 - -1.1
2,838,909 - +0.8
2,838,909 - +2.2
2,838,909 - -0.3
2,838,909 - -0.9
2,838,909 - -1.7
2,838,909 - +0.3
2,838,909 - -0.9
2,838,909 - +0.3
2,838,909 - +1.1
2,838,909 - +2.3
2,838,909 - -1.0
2,838,909 - +1.3
2,838,909 - -0.3
2,838,909 - -0.5
2,838,909 - -0.3
2,838,909 - -0.0
2,838,909 - -1.4
2,838,909 - +2.8
2,838,912 + -1.4
2,838,912 + -0.3
2,838,912 + +0.3
2,838,912 + -0.5
2,838,912 + -0.3
2,838,912 + -0.9
2,838,913 - -0.3
2,838,913 - -1.3
2,838,913 - -1.5
2,838,913 - +0.9
2,838,913 - -1.0
2,838,913 - +0.3
2,838,913 - -0.7
2,838,913 - -1.1
2,838,913 - -0.3
2,838,913 - +1.7
2,838,913 - -0.9
2,838,913 - -1.6
2,838,913 - -0.5
2,838,934 + -0.5
2,838,934 + -2.3
2,838,974 + -4.1
2,838,975 - -1.0
2,839,003 - -1.9
2,839,829 + OH686_13520 0.21 +0.3

Or see this region's nucleotide sequence