Strain Fitness in Pseudomonas sp. S08-1 around OH686_09310

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09305 and OH686_09310 overlap by 4 nucleotidesOH686_09310 and OH686_09315 are separated by 26 nucleotides OH686_09305: OH686_09305 - Septum-associated rare lipoprotein A, at 1,900,322 to 1,901,332 _09305 OH686_09310: OH686_09310 - lytic murein transglycosylase B, at 1,901,329 to 1,902,315 _09310 OH686_09315: OH686_09315 - rod shape-determining protein RodA, at 1,902,342 to 1,903,490 _09315 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1900.422 kb on - strandat 1900.462 kb on + strand, within OH686_09305at 1900.462 kb on + strand, within OH686_09305at 1900.463 kb on - strand, within OH686_09305at 1900.548 kb on + strand, within OH686_09305at 1900.548 kb on + strand, within OH686_09305at 1900.549 kb on - strand, within OH686_09305at 1900.549 kb on - strand, within OH686_09305at 1900.549 kb on - strand, within OH686_09305at 1900.549 kb on - strand, within OH686_09305at 1900.583 kb on + strand, within OH686_09305at 1900.584 kb on - strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.638 kb on + strand, within OH686_09305at 1900.639 kb on - strand, within OH686_09305at 1900.639 kb on - strand, within OH686_09305at 1900.639 kb on - strand, within OH686_09305at 1900.639 kb on - strand, within OH686_09305at 1900.639 kb on - strand, within OH686_09305at 1900.639 kb on - strand, within OH686_09305at 1900.639 kb on - strand, within OH686_09305at 1900.787 kb on - strand, within OH686_09305at 1900.787 kb on - strand, within OH686_09305at 1900.787 kb on - strand, within OH686_09305at 1900.812 kb on + strand, within OH686_09305at 1900.863 kb on + strand, within OH686_09305at 1900.863 kb on + strand, within OH686_09305at 1900.863 kb on + strand, within OH686_09305at 1900.863 kb on + strand, within OH686_09305at 1900.863 kb on + strand, within OH686_09305at 1900.864 kb on - strand, within OH686_09305at 1900.932 kb on + strand, within OH686_09305at 1900.932 kb on + strand, within OH686_09305at 1900.932 kb on + strand, within OH686_09305at 1900.932 kb on + strand, within OH686_09305at 1900.932 kb on + strand, within OH686_09305at 1900.932 kb on + strand, within OH686_09305at 1900.933 kb on - strand, within OH686_09305at 1900.933 kb on - strand, within OH686_09305at 1900.933 kb on - strand, within OH686_09305at 1900.933 kb on - strand, within OH686_09305at 1900.933 kb on - strand, within OH686_09305at 1900.933 kb on - strand, within OH686_09305at 1900.933 kb on - strand, within OH686_09305at 1900.974 kb on + strand, within OH686_09305at 1900.974 kb on + strand, within OH686_09305at 1900.974 kb on + strand, within OH686_09305at 1900.983 kb on + strand, within OH686_09305at 1900.984 kb on - strand, within OH686_09305at 1900.984 kb on - strand, within OH686_09305at 1900.984 kb on - strand, within OH686_09305at 1901.028 kb on + strand, within OH686_09305at 1901.029 kb on - strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.082 kb on + strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.083 kb on - strand, within OH686_09305at 1901.104 kb on - strand, within OH686_09305at 1901.104 kb on - strand, within OH686_09305at 1901.104 kb on - strand, within OH686_09305at 1901.104 kb on - strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.118 kb on + strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.119 kb on - strand, within OH686_09305at 1901.208 kb on + strand, within OH686_09305at 1901.208 kb on + strand, within OH686_09305at 1901.208 kb on + strand, within OH686_09305at 1901.208 kb on + strand, within OH686_09305at 1901.209 kb on - strand, within OH686_09305at 1901.209 kb on - strand, within OH686_09305at 1901.209 kb on - strand, within OH686_09305at 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.387 kb on + strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.388 kb on - strandat 1901.405 kb on + strandat 1901.405 kb on + strandat 1901.420 kb on + strandat 1901.420 kb on + strandat 1901.420 kb on + strandat 1901.420 kb on + strandat 1901.421 kb on - strandat 1901.421 kb on - strandat 1901.421 kb on - strandat 1901.421 kb on - strandat 1901.421 kb on - strandat 1901.421 kb on - strandat 1901.421 kb on - strandat 1901.444 kb on + strand, within OH686_09310at 1901.444 kb on + strand, within OH686_09310at 1901.445 kb on - strand, within OH686_09310at 1901.445 kb on - strand, within OH686_09310at 1901.445 kb on - strand, within OH686_09310at 1901.654 kb on + strand, within OH686_09310at 1901.654 kb on + strand, within OH686_09310at 1901.654 kb on + strand, within OH686_09310at 1901.655 kb on - strand, within OH686_09310at 1901.655 kb on - strand, within OH686_09310at 1901.697 kb on + strand, within OH686_09310at 1901.697 kb on + strand, within OH686_09310at 1901.698 kb on - strand, within OH686_09310at 1901.699 kb on + strand, within OH686_09310at 1901.783 kb on + strand, within OH686_09310at 1901.783 kb on + strand, within OH686_09310at 1901.783 kb on + strand, within OH686_09310at 1901.783 kb on + strand, within OH686_09310at 1901.784 kb on - strand, within OH686_09310at 1901.784 kb on - strand, within OH686_09310at 1901.784 kb on - strand, within OH686_09310at 1901.784 kb on - strand, within OH686_09310at 1901.939 kb on + strand, within OH686_09310at 1901.939 kb on + strand, within OH686_09310at 1901.939 kb on + strand, within OH686_09310at 1901.940 kb on - strand, within OH686_09310at 1901.991 kb on - strand, within OH686_09310at 1901.991 kb on - strand, within OH686_09310at 1902.084 kb on - strand, within OH686_09310at 1902.084 kb on - strand, within OH686_09310at 1902.151 kb on + strand, within OH686_09310at 1902.151 kb on + strand, within OH686_09310at 1902.151 kb on + strand, within OH686_09310at 1902.152 kb on - strand, within OH686_09310at 1902.152 kb on - strand, within OH686_09310at 1902.152 kb on - strand, within OH686_09310at 1902.152 kb on - strand, within OH686_09310at 1902.152 kb on - strand, within OH686_09310at 1902.152 kb on - strand, within OH686_09310at 1902.194 kb on + strand, within OH686_09310at 1902.194 kb on + strand, within OH686_09310at 1902.195 kb on - strand, within OH686_09310at 1902.245 kb on + strandat 1902.245 kb on + strandat 1902.246 kb on - strandat 1902.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,900,422 - -1.4
1,900,462 + OH686_09305 0.14 -1.3
1,900,462 + OH686_09305 0.14 -1.6
1,900,463 - OH686_09305 0.14 -3.3
1,900,548 + OH686_09305 0.22 -1.3
1,900,548 + OH686_09305 0.22 -1.5
1,900,549 - OH686_09305 0.22 -3.3
1,900,549 - OH686_09305 0.22 -3.6
1,900,549 - OH686_09305 0.22 -0.8
1,900,549 - OH686_09305 0.22 +0.6
1,900,583 + OH686_09305 0.26 -1.0
1,900,584 - OH686_09305 0.26 -0.1
1,900,638 + OH686_09305 0.31 -1.7
1,900,638 + OH686_09305 0.31 -2.1
1,900,638 + OH686_09305 0.31 -2.7
1,900,638 + OH686_09305 0.31 -2.8
1,900,638 + OH686_09305 0.31 -0.4
1,900,638 + OH686_09305 0.31 -2.3
1,900,638 + OH686_09305 0.31 +0.6
1,900,638 + OH686_09305 0.31 -0.1
1,900,638 + OH686_09305 0.31 -0.4
1,900,638 + OH686_09305 0.31 -3.1
1,900,639 - OH686_09305 0.31 -2.3
1,900,639 - OH686_09305 0.31 -1.1
1,900,639 - OH686_09305 0.31 +0.2
1,900,639 - OH686_09305 0.31 -1.1
1,900,639 - OH686_09305 0.31 -2.4
1,900,639 - OH686_09305 0.31 -3.6
1,900,639 - OH686_09305 0.31 -1.8
1,900,787 - OH686_09305 0.46 -0.6
1,900,787 - OH686_09305 0.46 -2.3
1,900,787 - OH686_09305 0.46 -1.6
1,900,812 + OH686_09305 0.48 -0.1
1,900,863 + OH686_09305 0.54 -2.8
1,900,863 + OH686_09305 0.54 -2.4
1,900,863 + OH686_09305 0.54 -1.7
1,900,863 + OH686_09305 0.54 -2.2
1,900,863 + OH686_09305 0.54 -2.7
1,900,864 - OH686_09305 0.54 -3.4
1,900,932 + OH686_09305 0.60 -1.2
1,900,932 + OH686_09305 0.60 -2.7
1,900,932 + OH686_09305 0.60 -1.4
1,900,932 + OH686_09305 0.60 -2.6
1,900,932 + OH686_09305 0.60 -0.1
1,900,932 + OH686_09305 0.60 -2.6
1,900,933 - OH686_09305 0.60 -1.8
1,900,933 - OH686_09305 0.60 +0.4
1,900,933 - OH686_09305 0.60 +0.7
1,900,933 - OH686_09305 0.60 -1.5
1,900,933 - OH686_09305 0.60 -1.4
1,900,933 - OH686_09305 0.60 -0.5
1,900,933 - OH686_09305 0.60 -2.2
1,900,974 + OH686_09305 0.64 -2.0
1,900,974 + OH686_09305 0.64 -2.8
1,900,974 + OH686_09305 0.64 -1.4
1,900,983 + OH686_09305 0.65 -3.9
1,900,984 - OH686_09305 0.65 -2.3
1,900,984 - OH686_09305 0.65 -2.7
1,900,984 - OH686_09305 0.65 -2.4
1,901,028 + OH686_09305 0.70 -3.0
1,901,029 - OH686_09305 0.70 -2.2
1,901,082 + OH686_09305 0.75 -2.0
1,901,082 + OH686_09305 0.75 -1.1
1,901,082 + OH686_09305 0.75 -3.6
1,901,082 + OH686_09305 0.75 -1.9
1,901,082 + OH686_09305 0.75 -3.4
1,901,082 + OH686_09305 0.75 -2.1
1,901,082 + OH686_09305 0.75 -0.3
1,901,082 + OH686_09305 0.75 -2.8
1,901,082 + OH686_09305 0.75 -2.1
1,901,082 + OH686_09305 0.75 -3.7
1,901,082 + OH686_09305 0.75 -1.2
1,901,082 + OH686_09305 0.75 -2.3
1,901,082 + OH686_09305 0.75 -3.2
1,901,082 + OH686_09305 0.75 -2.3
1,901,082 + OH686_09305 0.75 -1.1
1,901,082 + OH686_09305 0.75 -1.8
1,901,082 + OH686_09305 0.75 -2.7
1,901,082 + OH686_09305 0.75 -2.7
1,901,083 - OH686_09305 0.75 -2.4
1,901,083 - OH686_09305 0.75 -1.7
1,901,083 - OH686_09305 0.75 -2.0
1,901,083 - OH686_09305 0.75 -0.8
1,901,083 - OH686_09305 0.75 -2.1
1,901,083 - OH686_09305 0.75 -0.6
1,901,083 - OH686_09305 0.75 -3.6
1,901,083 - OH686_09305 0.75 -1.5
1,901,083 - OH686_09305 0.75 -2.2
1,901,083 - OH686_09305 0.75 -2.1
1,901,083 - OH686_09305 0.75 -2.5
1,901,083 - OH686_09305 0.75 -3.6
1,901,083 - OH686_09305 0.75 -2.3
1,901,083 - OH686_09305 0.75 -1.7
1,901,104 - OH686_09305 0.77 -3.1
1,901,104 - OH686_09305 0.77 -2.6
1,901,104 - OH686_09305 0.77 -1.3
1,901,104 - OH686_09305 0.77 -3.3
1,901,118 + OH686_09305 0.79 -0.9
1,901,118 + OH686_09305 0.79 -2.2
1,901,118 + OH686_09305 0.79 -0.7
1,901,118 + OH686_09305 0.79 -0.6
1,901,118 + OH686_09305 0.79 -2.2
1,901,118 + OH686_09305 0.79 -1.7
1,901,118 + OH686_09305 0.79 -2.6
1,901,118 + OH686_09305 0.79 -2.1
1,901,118 + OH686_09305 0.79 -1.4
1,901,118 + OH686_09305 0.79 -1.3
1,901,118 + OH686_09305 0.79 -2.3
1,901,118 + OH686_09305 0.79 -1.7
1,901,118 + OH686_09305 0.79 -1.4
1,901,118 + OH686_09305 0.79 -1.4
1,901,119 - OH686_09305 0.79 -3.7
1,901,119 - OH686_09305 0.79 -0.7
1,901,119 - OH686_09305 0.79 -3.0
1,901,119 - OH686_09305 0.79 -2.1
1,901,119 - OH686_09305 0.79 -1.7
1,901,119 - OH686_09305 0.79 -3.0
1,901,119 - OH686_09305 0.79 -2.4
1,901,119 - OH686_09305 0.79 -3.4
1,901,119 - OH686_09305 0.79 -4.1
1,901,119 - OH686_09305 0.79 -3.4
1,901,119 - OH686_09305 0.79 -0.9
1,901,119 - OH686_09305 0.79 -3.0
1,901,208 + OH686_09305 0.88 -2.4
1,901,208 + OH686_09305 0.88 -0.6
1,901,208 + OH686_09305 0.88 -3.4
1,901,208 + OH686_09305 0.88 -2.1
1,901,209 - OH686_09305 0.88 -1.0
1,901,209 - OH686_09305 0.88 -0.2
1,901,209 - OH686_09305 0.88 -0.1
1,901,387 + -3.0
1,901,387 + -1.3
1,901,387 + +0.1
1,901,387 + -2.9
1,901,387 + -2.9
1,901,387 + -1.3
1,901,387 + -2.9
1,901,387 + -4.5
1,901,387 + -1.7
1,901,388 - -0.5
1,901,388 - -1.3
1,901,388 - -2.4
1,901,388 - -0.8
1,901,388 - -1.7
1,901,388 - -1.9
1,901,388 - +0.6
1,901,388 - -1.9
1,901,388 - -0.0
1,901,388 - -2.1
1,901,388 - -4.1
1,901,388 - -2.2
1,901,405 + +2.7
1,901,405 + -3.3
1,901,420 + -2.6
1,901,420 + -2.2
1,901,420 + -1.6
1,901,420 + -2.1
1,901,421 - -3.1
1,901,421 - -2.8
1,901,421 - -2.0
1,901,421 - -2.6
1,901,421 - -0.8
1,901,421 - -1.5
1,901,421 - -2.2
1,901,444 + OH686_09310 0.12 -1.8
1,901,444 + OH686_09310 0.12 +0.2
1,901,445 - OH686_09310 0.12 -0.7
1,901,445 - OH686_09310 0.12 -0.6
1,901,445 - OH686_09310 0.12 -3.0
1,901,654 + OH686_09310 0.33 -3.6
1,901,654 + OH686_09310 0.33 -2.3
1,901,654 + OH686_09310 0.33 -0.6
1,901,655 - OH686_09310 0.33 -2.5
1,901,655 - OH686_09310 0.33 -2.4
1,901,697 + OH686_09310 0.37 -1.3
1,901,697 + OH686_09310 0.37 -3.1
1,901,698 - OH686_09310 0.37 -2.1
1,901,699 + OH686_09310 0.37 -4.0
1,901,783 + OH686_09310 0.46 -1.4
1,901,783 + OH686_09310 0.46 -3.4
1,901,783 + OH686_09310 0.46 -0.0
1,901,783 + OH686_09310 0.46 -4.4
1,901,784 - OH686_09310 0.46 -3.1
1,901,784 - OH686_09310 0.46 -2.1
1,901,784 - OH686_09310 0.46 -0.8
1,901,784 - OH686_09310 0.46 -0.8
1,901,939 + OH686_09310 0.62 -1.1
1,901,939 + OH686_09310 0.62 -1.3
1,901,939 + OH686_09310 0.62 -4.2
1,901,940 - OH686_09310 0.62 +0.2
1,901,991 - OH686_09310 0.67 -0.6
1,901,991 - OH686_09310 0.67 -4.1
1,902,084 - OH686_09310 0.76 -2.6
1,902,084 - OH686_09310 0.76 -3.4
1,902,151 + OH686_09310 0.83 -2.3
1,902,151 + OH686_09310 0.83 -0.8
1,902,151 + OH686_09310 0.83 -2.0
1,902,152 - OH686_09310 0.83 -1.8
1,902,152 - OH686_09310 0.83 -2.6
1,902,152 - OH686_09310 0.83 -1.9
1,902,152 - OH686_09310 0.83 -2.9
1,902,152 - OH686_09310 0.83 -0.7
1,902,152 - OH686_09310 0.83 -3.5
1,902,194 + OH686_09310 0.88 -3.1
1,902,194 + OH686_09310 0.88 -1.1
1,902,195 - OH686_09310 0.88 -4.1
1,902,245 + -2.1
1,902,245 + -3.1
1,902,246 - -2.6
1,902,246 - -3.8

Or see this region's nucleotide sequence