Strain Fitness in Pseudomonas sp. S08-1 around OH686_08805

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_08800 and OH686_08805 are separated by 192 nucleotidesOH686_08805 and OH686_08810 are separated by 52 nucleotides OH686_08800: OH686_08800 - ATP-dependent helicase HrpB, at 1,791,118 to 1,793,640 _08800 OH686_08805: OH686_08805 - Uncharacterized protein, at 1,793,833 to 1,794,249 _08805 OH686_08810: OH686_08810 - Ferrous-iron efflux pump FieF, at 1,794,302 to 1,795,186 _08810 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1792.978 kb on + strand, within OH686_08800at 1792.978 kb on + strand, within OH686_08800at 1792.978 kb on + strand, within OH686_08800at 1792.978 kb on + strand, within OH686_08800at 1792.979 kb on - strand, within OH686_08800at 1793.359 kb on - strand, within OH686_08800at 1793.667 kb on - strandat 1793.667 kb on - strandat 1793.667 kb on - strandat 1793.667 kb on - strandat 1793.667 kb on - strandat 1793.668 kb on + strandat 1793.668 kb on + strandat 1793.668 kb on + strandat 1793.668 kb on + strandat 1793.668 kb on + strandat 1793.669 kb on - strandat 1793.669 kb on - strandat 1793.669 kb on - strandat 1793.669 kb on - strandat 1793.669 kb on - strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.802 kb on + strandat 1793.803 kb on - strandat 1793.803 kb on - strandat 1793.803 kb on - strandat 1793.803 kb on - strandat 1793.803 kb on - strandat 1793.803 kb on - strandat 1793.803 kb on - strandat 1793.804 kb on + strandat 1793.804 kb on + strandat 1793.805 kb on - strandat 1793.805 kb on - strandat 1793.805 kb on - strandat 1793.805 kb on - strandat 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.992 kb on + strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1793.993 kb on - strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.046 kb on + strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.047 kb on - strand, within OH686_08805at 1794.064 kb on + strand, within OH686_08805at 1794.064 kb on + strand, within OH686_08805at 1794.491 kb on + strand, within OH686_08810at 1794.491 kb on + strand, within OH686_08810at 1794.491 kb on + strand, within OH686_08810at 1794.491 kb on + strand, within OH686_08810at 1794.491 kb on + strand, within OH686_08810at 1794.492 kb on - strand, within OH686_08810at 1794.492 kb on - strand, within OH686_08810at 1794.492 kb on - strand, within OH686_08810at 1794.492 kb on - strand, within OH686_08810at 1794.525 kb on - strand, within OH686_08810at 1794.702 kb on + strand, within OH686_08810at 1794.702 kb on + strand, within OH686_08810at 1794.702 kb on + strand, within OH686_08810at 1794.702 kb on + strand, within OH686_08810at 1794.702 kb on + strand, within OH686_08810at 1794.702 kb on + strand, within OH686_08810at 1794.703 kb on - strand, within OH686_08810at 1794.703 kb on - strand, within OH686_08810at 1794.703 kb on - strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.872 kb on + strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.873 kb on - strand, within OH686_08810at 1794.918 kb on + strand, within OH686_08810at 1795.077 kb on + strand, within OH686_08810at 1795.078 kb on - strand, within OH686_08810at 1795.078 kb on - strand, within OH686_08810at 1795.247 kb on + strandat 1795.248 kb on - strandat 1795.248 kb on - strandat 1795.248 kb on - strandat 1795.248 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
1,792,978 + OH686_08800 0.74 -0.2
1,792,978 + OH686_08800 0.74 +2.4
1,792,978 + OH686_08800 0.74 +2.5
1,792,978 + OH686_08800 0.74 -1.3
1,792,979 - OH686_08800 0.74 -1.2
1,793,359 - OH686_08800 0.89 -1.7
1,793,667 - +0.5
1,793,667 - -1.2
1,793,667 - +1.4
1,793,667 - +0.8
1,793,667 - -1.8
1,793,668 + -2.0
1,793,668 + +0.3
1,793,668 + -1.1
1,793,668 + -0.4
1,793,668 + +0.3
1,793,669 - -0.4
1,793,669 - -0.9
1,793,669 - +0.2
1,793,669 - +1.6
1,793,669 - -0.2
1,793,802 + -2.1
1,793,802 + -2.5
1,793,802 + +0.5
1,793,802 + +1.0
1,793,802 + +1.6
1,793,802 + -3.7
1,793,802 + -0.9
1,793,802 + +1.2
1,793,802 + -0.8
1,793,803 - -2.3
1,793,803 - -2.8
1,793,803 - -0.4
1,793,803 - -0.9
1,793,803 - -0.9
1,793,803 - -1.8
1,793,803 - +2.4
1,793,804 + +0.5
1,793,804 + -1.5
1,793,805 - -3.1
1,793,805 - -4.1
1,793,805 - +0.2
1,793,805 - -0.8
1,793,992 + OH686_08805 0.38 -2.3
1,793,992 + OH686_08805 0.38 -1.9
1,793,992 + OH686_08805 0.38 -2.1
1,793,992 + OH686_08805 0.38 -0.8
1,793,992 + OH686_08805 0.38 -0.6
1,793,992 + OH686_08805 0.38 +2.1
1,793,992 + OH686_08805 0.38 -3.3
1,793,992 + OH686_08805 0.38 -0.3
1,793,992 + OH686_08805 0.38 -3.1
1,793,993 - OH686_08805 0.38 -0.9
1,793,993 - OH686_08805 0.38 -2.6
1,793,993 - OH686_08805 0.38 -0.3
1,793,993 - OH686_08805 0.38 -3.1
1,793,993 - OH686_08805 0.38 -1.8
1,793,993 - OH686_08805 0.38 -1.9
1,793,993 - OH686_08805 0.38 +0.7
1,793,993 - OH686_08805 0.38 +0.5
1,793,993 - OH686_08805 0.38 -1.1
1,794,046 + OH686_08805 0.51 -0.6
1,794,046 + OH686_08805 0.51 -3.4
1,794,046 + OH686_08805 0.51 -2.1
1,794,046 + OH686_08805 0.51 -2.0
1,794,046 + OH686_08805 0.51 -1.6
1,794,046 + OH686_08805 0.51 -3.5
1,794,046 + OH686_08805 0.51 +0.2
1,794,046 + OH686_08805 0.51 -2.9
1,794,046 + OH686_08805 0.51 -0.9
1,794,046 + OH686_08805 0.51 -2.4
1,794,046 + OH686_08805 0.51 -0.7
1,794,046 + OH686_08805 0.51 -0.3
1,794,046 + OH686_08805 0.51 -2.2
1,794,046 + OH686_08805 0.51 -2.4
1,794,046 + OH686_08805 0.51 -3.8
1,794,047 - OH686_08805 0.51 -0.7
1,794,047 - OH686_08805 0.51 +1.3
1,794,047 - OH686_08805 0.51 -1.7
1,794,047 - OH686_08805 0.51 -3.5
1,794,047 - OH686_08805 0.51 +1.7
1,794,047 - OH686_08805 0.51 -1.9
1,794,047 - OH686_08805 0.51 -3.7
1,794,047 - OH686_08805 0.51 -3.1
1,794,047 - OH686_08805 0.51 -0.3
1,794,047 - OH686_08805 0.51 -0.3
1,794,047 - OH686_08805 0.51 -1.7
1,794,047 - OH686_08805 0.51 -0.6
1,794,047 - OH686_08805 0.51 -1.2
1,794,047 - OH686_08805 0.51 -0.1
1,794,047 - OH686_08805 0.51 -2.9
1,794,047 - OH686_08805 0.51 +0.3
1,794,047 - OH686_08805 0.51 -1.6
1,794,064 + OH686_08805 0.55 +0.1
1,794,064 + OH686_08805 0.55 -1.6
1,794,491 + OH686_08810 0.21 -2.7
1,794,491 + OH686_08810 0.21 -1.1
1,794,491 + OH686_08810 0.21 +2.2
1,794,491 + OH686_08810 0.21 +1.8
1,794,491 + OH686_08810 0.21 -0.1
1,794,492 - OH686_08810 0.21 +0.1
1,794,492 - OH686_08810 0.21 -1.5
1,794,492 - OH686_08810 0.21 -2.8
1,794,492 - OH686_08810 0.21 -1.5
1,794,525 - OH686_08810 0.25 -1.9
1,794,702 + OH686_08810 0.45 +0.3
1,794,702 + OH686_08810 0.45 -1.4
1,794,702 + OH686_08810 0.45 -3.1
1,794,702 + OH686_08810 0.45 -1.0
1,794,702 + OH686_08810 0.45 +1.5
1,794,702 + OH686_08810 0.45 -0.3
1,794,703 - OH686_08810 0.45 +0.6
1,794,703 - OH686_08810 0.45 -2.2
1,794,703 - OH686_08810 0.45 -0.7
1,794,872 + OH686_08810 0.64 +3.0
1,794,872 + OH686_08810 0.64 -0.8
1,794,872 + OH686_08810 0.64 +0.5
1,794,872 + OH686_08810 0.64 +0.3
1,794,872 + OH686_08810 0.64 -1.5
1,794,872 + OH686_08810 0.64 -0.8
1,794,872 + OH686_08810 0.64 -0.5
1,794,872 + OH686_08810 0.64 -1.1
1,794,872 + OH686_08810 0.64 +1.7
1,794,872 + OH686_08810 0.64 +0.0
1,794,872 + OH686_08810 0.64 +1.7
1,794,872 + OH686_08810 0.64 +1.3
1,794,873 - OH686_08810 0.65 -1.5
1,794,873 - OH686_08810 0.65 -2.6
1,794,873 - OH686_08810 0.65 -3.5
1,794,873 - OH686_08810 0.65 -1.8
1,794,873 - OH686_08810 0.65 +0.4
1,794,873 - OH686_08810 0.65 -2.9
1,794,873 - OH686_08810 0.65 +1.0
1,794,873 - OH686_08810 0.65 +0.3
1,794,873 - OH686_08810 0.65 -1.0
1,794,873 - OH686_08810 0.65 -3.3
1,794,873 - OH686_08810 0.65 -2.3
1,794,873 - OH686_08810 0.65 +1.2
1,794,873 - OH686_08810 0.65 +0.4
1,794,918 + OH686_08810 0.70 -1.8
1,795,077 + OH686_08810 0.88 +0.8
1,795,078 - OH686_08810 0.88 +2.2
1,795,078 - OH686_08810 0.88 +1.6
1,795,247 + -2.3
1,795,248 - -2.4
1,795,248 - +0.6
1,795,248 - -0.1
1,795,248 - +0.1

Or see this region's nucleotide sequence