Strain Fitness in Pseudomonas sp. S08-1 around OH686_06555

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06550 and OH686_06555 are separated by 167 nucleotidesOH686_06555 and OH686_06560 are separated by 92 nucleotides OH686_06550: OH686_06550 - NADPH-dependent broad range aldehyde dehydrogenase YqhD, at 1,329,764 to 1,330,906 _06550 OH686_06555: OH686_06555 - probable glucosyl transferase, at 1,331,074 to 1,333,671 _06555 OH686_06560: OH686_06560 - succinyl-diaminopimelate desuccinylase, at 1,333,764 to 1,334,903 _06560 Position (kb) 1331 1332 1333 1334Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1330.092 kb on - strand, within OH686_06550at 1330.358 kb on + strand, within OH686_06550at 1330.358 kb on + strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.359 kb on - strand, within OH686_06550at 1330.463 kb on + strand, within OH686_06550at 1330.463 kb on + strand, within OH686_06550at 1330.463 kb on + strand, within OH686_06550at 1330.464 kb on - strand, within OH686_06550at 1330.580 kb on + strand, within OH686_06550at 1330.581 kb on - strand, within OH686_06550at 1330.611 kb on + strand, within OH686_06550at 1330.611 kb on + strand, within OH686_06550at 1330.611 kb on + strand, within OH686_06550at 1330.670 kb on + strand, within OH686_06550at 1330.671 kb on - strand, within OH686_06550at 1330.983 kb on + strandat 1330.984 kb on - strandat 1330.984 kb on - strandat 1330.984 kb on - strandat 1330.985 kb on + strandat 1330.985 kb on + strandat 1330.985 kb on + strandat 1330.985 kb on + strandat 1330.985 kb on + strandat 1330.986 kb on - strandat 1330.986 kb on - strandat 1330.986 kb on - strandat 1330.986 kb on - strandat 1330.986 kb on - strandat 1330.986 kb on - strandat 1331.065 kb on + strandat 1331.065 kb on + strandat 1331.066 kb on - strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.152 kb on + strandat 1331.153 kb on - strandat 1331.153 kb on - strandat 1331.317 kb on + strandat 1331.317 kb on + strandat 1331.317 kb on + strandat 1331.318 kb on - strandat 1331.318 kb on - strandat 1331.318 kb on - strandat 1331.536 kb on + strand, within OH686_06555at 1331.536 kb on + strand, within OH686_06555at 1331.536 kb on + strand, within OH686_06555at 1331.536 kb on + strand, within OH686_06555at 1331.536 kb on + strand, within OH686_06555at 1331.537 kb on - strand, within OH686_06555at 1331.537 kb on - strand, within OH686_06555at 1331.537 kb on - strand, within OH686_06555at 1331.577 kb on + strand, within OH686_06555at 1331.577 kb on + strand, within OH686_06555at 1331.577 kb on + strand, within OH686_06555at 1331.577 kb on + strand, within OH686_06555at 1331.578 kb on - strand, within OH686_06555at 1331.578 kb on - strand, within OH686_06555at 1331.578 kb on - strand, within OH686_06555at 1331.578 kb on - strand, within OH686_06555at 1331.578 kb on - strand, within OH686_06555at 1331.578 kb on - strand, within OH686_06555at 1331.578 kb on - strand, within OH686_06555at 1331.659 kb on + strand, within OH686_06555at 1331.827 kb on + strand, within OH686_06555at 1331.827 kb on + strand, within OH686_06555at 1331.866 kb on + strand, within OH686_06555at 1331.866 kb on + strand, within OH686_06555at 1331.867 kb on - strand, within OH686_06555at 1331.867 kb on - strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.872 kb on + strand, within OH686_06555at 1331.873 kb on - strand, within OH686_06555at 1331.873 kb on - strand, within OH686_06555at 1331.873 kb on - strand, within OH686_06555at 1331.873 kb on - strand, within OH686_06555at 1331.873 kb on - strand, within OH686_06555at 1331.935 kb on + strand, within OH686_06555at 1331.935 kb on + strand, within OH686_06555at 1331.936 kb on - strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.947 kb on + strand, within OH686_06555at 1331.948 kb on - strand, within OH686_06555at 1331.948 kb on - strand, within OH686_06555at 1331.948 kb on - strand, within OH686_06555at 1332.155 kb on - strand, within OH686_06555at 1332.160 kb on + strand, within OH686_06555at 1332.161 kb on - strand, within OH686_06555at 1332.161 kb on - strand, within OH686_06555at 1332.172 kb on + strand, within OH686_06555at 1332.173 kb on - strand, within OH686_06555at 1332.173 kb on - strand, within OH686_06555at 1332.173 kb on - strand, within OH686_06555at 1332.173 kb on - strand, within OH686_06555at 1332.173 kb on - strand, within OH686_06555at 1332.173 kb on - strand, within OH686_06555at 1332.361 kb on + strand, within OH686_06555at 1332.361 kb on + strand, within OH686_06555at 1332.361 kb on + strand, within OH686_06555at 1332.361 kb on + strand, within OH686_06555at 1332.361 kb on + strand, within OH686_06555at 1332.361 kb on + strand, within OH686_06555at 1332.362 kb on - strand, within OH686_06555at 1332.362 kb on - strand, within OH686_06555at 1332.362 kb on - strand, within OH686_06555at 1332.362 kb on - strand, within OH686_06555at 1332.362 kb on - strand, within OH686_06555at 1332.427 kb on + strand, within OH686_06555at 1332.428 kb on - strand, within OH686_06555at 1332.428 kb on - strand, within OH686_06555at 1332.428 kb on - strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.568 kb on + strand, within OH686_06555at 1332.569 kb on - strand, within OH686_06555at 1332.569 kb on - strand, within OH686_06555at 1332.569 kb on - strand, within OH686_06555at 1332.569 kb on - strand, within OH686_06555at 1332.569 kb on - strand, within OH686_06555at 1332.569 kb on - strand, within OH686_06555at 1332.569 kb on - strand, within OH686_06555at 1332.625 kb on + strand, within OH686_06555at 1332.626 kb on - strand, within OH686_06555at 1332.709 kb on + strand, within OH686_06555at 1332.748 kb on + strand, within OH686_06555at 1332.748 kb on + strand, within OH686_06555at 1332.749 kb on - strand, within OH686_06555at 1332.758 kb on - strand, within OH686_06555at 1332.937 kb on + strand, within OH686_06555at 1332.938 kb on - strand, within OH686_06555at 1332.988 kb on + strand, within OH686_06555at 1332.988 kb on + strand, within OH686_06555at 1332.989 kb on - strand, within OH686_06555at 1332.989 kb on - strand, within OH686_06555at 1333.016 kb on - strand, within OH686_06555at 1333.016 kb on - strand, within OH686_06555at 1333.375 kb on + strand, within OH686_06555at 1333.375 kb on + strand, within OH686_06555at 1333.375 kb on + strand, within OH686_06555at 1333.375 kb on + strand, within OH686_06555at 1333.375 kb on + strand, within OH686_06555at 1333.585 kb on + strandat 1333.586 kb on - strandat 1333.672 kb on + strandat 1333.672 kb on + strandat 1333.672 kb on + strandat 1333.722 kb on + strandat 1333.722 kb on + strandat 1333.722 kb on + strandat 1333.723 kb on - strandat 1333.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,330,092 - OH686_06550 0.29 -1.7
1,330,358 + OH686_06550 0.52 -2.2
1,330,358 + OH686_06550 0.52 +0.4
1,330,359 - OH686_06550 0.52 -3.4
1,330,359 - OH686_06550 0.52 -0.8
1,330,359 - OH686_06550 0.52 +0.6
1,330,359 - OH686_06550 0.52 +1.3
1,330,359 - OH686_06550 0.52 -0.1
1,330,359 - OH686_06550 0.52 +0.4
1,330,359 - OH686_06550 0.52 -0.5
1,330,359 - OH686_06550 0.52 +1.8
1,330,359 - OH686_06550 0.52 -2.4
1,330,463 + OH686_06550 0.61 -2.2
1,330,463 + OH686_06550 0.61 -1.0
1,330,463 + OH686_06550 0.61 +0.5
1,330,464 - OH686_06550 0.61 +0.3
1,330,580 + OH686_06550 0.71 -1.0
1,330,581 - OH686_06550 0.71 +0.4
1,330,611 + OH686_06550 0.74 -0.5
1,330,611 + OH686_06550 0.74 +1.2
1,330,611 + OH686_06550 0.74 -1.0
1,330,670 + OH686_06550 0.79 +0.8
1,330,671 - OH686_06550 0.79 -1.7
1,330,983 + -2.5
1,330,984 - +0.7
1,330,984 - +0.8
1,330,984 - +0.3
1,330,985 + +0.4
1,330,985 + -3.2
1,330,985 + -2.1
1,330,985 + -3.5
1,330,985 + +0.1
1,330,986 - +2.0
1,330,986 - -0.1
1,330,986 - -0.3
1,330,986 - -2.2
1,330,986 - +0.9
1,330,986 - -2.5
1,331,065 + +1.8
1,331,065 + -1.2
1,331,066 - +0.6
1,331,152 + -1.7
1,331,152 + -1.6
1,331,152 + -1.4
1,331,152 + +0.8
1,331,152 + -3.2
1,331,152 + -1.4
1,331,152 + -3.5
1,331,152 + -1.8
1,331,152 + -0.8
1,331,152 + -0.6
1,331,152 + -2.7
1,331,152 + +2.2
1,331,152 + +1.2
1,331,152 + -1.0
1,331,153 - -2.6
1,331,153 - -2.1
1,331,317 + -1.2
1,331,317 + +1.7
1,331,317 + +0.2
1,331,318 - -2.5
1,331,318 - -3.0
1,331,318 - +0.3
1,331,536 + OH686_06555 0.18 -3.0
1,331,536 + OH686_06555 0.18 -3.8
1,331,536 + OH686_06555 0.18 -0.4
1,331,536 + OH686_06555 0.18 +0.2
1,331,536 + OH686_06555 0.18 +0.3
1,331,537 - OH686_06555 0.18 -0.9
1,331,537 - OH686_06555 0.18 -3.5
1,331,537 - OH686_06555 0.18 -2.6
1,331,577 + OH686_06555 0.19 -2.9
1,331,577 + OH686_06555 0.19 -2.7
1,331,577 + OH686_06555 0.19 -3.5
1,331,577 + OH686_06555 0.19 -2.0
1,331,578 - OH686_06555 0.19 -1.1
1,331,578 - OH686_06555 0.19 -1.8
1,331,578 - OH686_06555 0.19 -2.5
1,331,578 - OH686_06555 0.19 -3.3
1,331,578 - OH686_06555 0.19 -3.0
1,331,578 - OH686_06555 0.19 -2.5
1,331,578 - OH686_06555 0.19 -1.4
1,331,659 + OH686_06555 0.23 -1.5
1,331,827 + OH686_06555 0.29 -2.9
1,331,827 + OH686_06555 0.29 +2.4
1,331,866 + OH686_06555 0.30 -2.7
1,331,866 + OH686_06555 0.30 -1.9
1,331,867 - OH686_06555 0.31 -0.1
1,331,867 - OH686_06555 0.31 -3.1
1,331,872 + OH686_06555 0.31 +1.0
1,331,872 + OH686_06555 0.31 +0.6
1,331,872 + OH686_06555 0.31 -0.8
1,331,872 + OH686_06555 0.31 -3.3
1,331,872 + OH686_06555 0.31 -2.2
1,331,872 + OH686_06555 0.31 -1.0
1,331,872 + OH686_06555 0.31 -1.0
1,331,872 + OH686_06555 0.31 -1.7
1,331,872 + OH686_06555 0.31 -1.6
1,331,872 + OH686_06555 0.31 -0.8
1,331,873 - OH686_06555 0.31 -1.5
1,331,873 - OH686_06555 0.31 -3.5
1,331,873 - OH686_06555 0.31 -2.5
1,331,873 - OH686_06555 0.31 -2.2
1,331,873 - OH686_06555 0.31 -1.2
1,331,935 + OH686_06555 0.33 -2.0
1,331,935 + OH686_06555 0.33 -2.2
1,331,936 - OH686_06555 0.33 -1.0
1,331,947 + OH686_06555 0.34 -2.4
1,331,947 + OH686_06555 0.34 -0.6
1,331,947 + OH686_06555 0.34 -2.1
1,331,947 + OH686_06555 0.34 -2.1
1,331,947 + OH686_06555 0.34 -1.4
1,331,947 + OH686_06555 0.34 -2.3
1,331,947 + OH686_06555 0.34 -3.0
1,331,947 + OH686_06555 0.34 -1.6
1,331,947 + OH686_06555 0.34 -2.0
1,331,948 - OH686_06555 0.34 -2.3
1,331,948 - OH686_06555 0.34 -3.3
1,331,948 - OH686_06555 0.34 -0.2
1,332,155 - OH686_06555 0.42 -3.0
1,332,160 + OH686_06555 0.42 -2.5
1,332,161 - OH686_06555 0.42 +1.7
1,332,161 - OH686_06555 0.42 -2.4
1,332,172 + OH686_06555 0.42 -2.4
1,332,173 - OH686_06555 0.42 +0.2
1,332,173 - OH686_06555 0.42 -2.6
1,332,173 - OH686_06555 0.42 +0.4
1,332,173 - OH686_06555 0.42 -3.6
1,332,173 - OH686_06555 0.42 -0.1
1,332,173 - OH686_06555 0.42 -3.5
1,332,361 + OH686_06555 0.50 -1.8
1,332,361 + OH686_06555 0.50 -2.1
1,332,361 + OH686_06555 0.50 +0.5
1,332,361 + OH686_06555 0.50 -2.2
1,332,361 + OH686_06555 0.50 -3.1
1,332,361 + OH686_06555 0.50 -0.8
1,332,362 - OH686_06555 0.50 -1.5
1,332,362 - OH686_06555 0.50 -0.1
1,332,362 - OH686_06555 0.50 -1.4
1,332,362 - OH686_06555 0.50 -1.5
1,332,362 - OH686_06555 0.50 -1.9
1,332,427 + OH686_06555 0.52 -0.1
1,332,428 - OH686_06555 0.52 -1.4
1,332,428 - OH686_06555 0.52 -3.1
1,332,428 - OH686_06555 0.52 -1.4
1,332,568 + OH686_06555 0.58 -1.5
1,332,568 + OH686_06555 0.58 -2.3
1,332,568 + OH686_06555 0.58 -3.9
1,332,568 + OH686_06555 0.58 -2.5
1,332,568 + OH686_06555 0.58 -2.3
1,332,568 + OH686_06555 0.58 +0.6
1,332,568 + OH686_06555 0.58 -1.6
1,332,568 + OH686_06555 0.58 -1.1
1,332,569 - OH686_06555 0.58 +1.9
1,332,569 - OH686_06555 0.58 -0.4
1,332,569 - OH686_06555 0.58 -1.2
1,332,569 - OH686_06555 0.58 -1.6
1,332,569 - OH686_06555 0.58 -2.1
1,332,569 - OH686_06555 0.58 -2.7
1,332,569 - OH686_06555 0.58 -0.5
1,332,625 + OH686_06555 0.60 -0.8
1,332,626 - OH686_06555 0.60 -3.3
1,332,709 + OH686_06555 0.63 -3.2
1,332,748 + OH686_06555 0.64 -2.1
1,332,748 + OH686_06555 0.64 -1.6
1,332,749 - OH686_06555 0.64 +2.2
1,332,758 - OH686_06555 0.65 -2.9
1,332,937 + OH686_06555 0.72 -2.0
1,332,938 - OH686_06555 0.72 -2.2
1,332,988 + OH686_06555 0.74 -1.3
1,332,988 + OH686_06555 0.74 -2.0
1,332,989 - OH686_06555 0.74 -2.9
1,332,989 - OH686_06555 0.74 -1.9
1,333,016 - OH686_06555 0.75 -1.5
1,333,016 - OH686_06555 0.75 -1.6
1,333,375 + OH686_06555 0.89 -2.3
1,333,375 + OH686_06555 0.89 -3.0
1,333,375 + OH686_06555 0.89 +0.6
1,333,375 + OH686_06555 0.89 -1.7
1,333,375 + OH686_06555 0.89 -0.6
1,333,585 + -1.7
1,333,586 - -1.7
1,333,672 + +1.0
1,333,672 + +0.1
1,333,672 + -1.0
1,333,722 + +1.5
1,333,722 + +1.0
1,333,722 + -1.4
1,333,723 - -1.2
1,333,723 - +1.1

Or see this region's nucleotide sequence