Strain Fitness in Pseudomonas sp. S08-1 around OH686_06185

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06180 and OH686_06185 overlap by 4 nucleotidesOH686_06185 and OH686_06190 are separated by 145 nucleotidesOH686_06190 and OH686_06195 are separated by 58 nucleotides OH686_06180: OH686_06180 - Alkane-1 monooxygenase , at 1,245,097 to 1,246,257 _06180 OH686_06185: OH686_06185 - Rubredoxin, at 1,246,254 to 1,246,421 _06185 OH686_06190: OH686_06190 - Transcriptional regulator, ArsR family, at 1,246,567 to 1,246,872 _06190 OH686_06195: OH686_06195 - Uncharacterized MFS-type transporter, at 1,246,931 to 1,248,100 _06195 Position (kb) 1246 1247Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1245.311 kb on + strand, within OH686_06180at 1245.334 kb on + strand, within OH686_06180at 1245.334 kb on + strand, within OH686_06180at 1245.334 kb on + strand, within OH686_06180at 1245.335 kb on - strand, within OH686_06180at 1245.335 kb on - strand, within OH686_06180at 1245.335 kb on - strand, within OH686_06180at 1245.335 kb on - strand, within OH686_06180at 1245.335 kb on - strand, within OH686_06180at 1245.335 kb on - strand, within OH686_06180at 1245.352 kb on + strand, within OH686_06180at 1245.352 kb on + strand, within OH686_06180at 1245.352 kb on + strand, within OH686_06180at 1245.353 kb on - strand, within OH686_06180at 1245.353 kb on - strand, within OH686_06180at 1245.353 kb on - strand, within OH686_06180at 1245.353 kb on - strand, within OH686_06180at 1245.353 kb on - strand, within OH686_06180at 1245.353 kb on - strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.571 kb on + strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.572 kb on - strand, within OH686_06180at 1245.653 kb on - strand, within OH686_06180at 1245.793 kb on + strand, within OH686_06180at 1245.793 kb on + strand, within OH686_06180at 1245.793 kb on + strand, within OH686_06180at 1245.793 kb on + strand, within OH686_06180at 1245.793 kb on + strand, within OH686_06180at 1245.794 kb on - strand, within OH686_06180at 1245.794 kb on - strand, within OH686_06180at 1245.835 kb on + strand, within OH686_06180at 1245.836 kb on - strand, within OH686_06180at 1245.836 kb on - strand, within OH686_06180at 1245.836 kb on - strand, within OH686_06180at 1245.836 kb on - strand, within OH686_06180at 1245.886 kb on + strand, within OH686_06180at 1245.886 kb on + strand, within OH686_06180at 1245.887 kb on - strand, within OH686_06180at 1245.887 kb on - strand, within OH686_06180at 1245.887 kb on - strand, within OH686_06180at 1245.887 kb on - strand, within OH686_06180at 1246.045 kb on + strand, within OH686_06180at 1246.093 kb on + strand, within OH686_06180at 1246.094 kb on - strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.105 kb on + strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.106 kb on - strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.117 kb on + strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.118 kb on - strand, within OH686_06180at 1246.121 kb on + strand, within OH686_06180at 1246.130 kb on + strand, within OH686_06180at 1246.131 kb on - strand, within OH686_06180at 1246.131 kb on - strand, within OH686_06180at 1246.131 kb on - strand, within OH686_06180at 1246.290 kb on + strand, within OH686_06185at 1246.334 kb on + strand, within OH686_06185at 1246.530 kb on + strandat 1246.531 kb on - strandat 1246.552 kb on + strandat 1246.552 kb on + strandat 1246.552 kb on + strandat 1246.552 kb on + strandat 1246.553 kb on - strandat 1246.560 kb on + strandat 1246.560 kb on + strandat 1246.561 kb on - strandat 1246.561 kb on - strandat 1246.561 kb on - strandat 1246.561 kb on - strandat 1246.822 kb on - strand, within OH686_06190at 1247.201 kb on + strand, within OH686_06195at 1247.202 kb on - strand, within OH686_06195at 1247.352 kb on + strand, within OH686_06195at 1247.352 kb on + strand, within OH686_06195at 1247.353 kb on - strand, within OH686_06195at 1247.353 kb on - strand, within OH686_06195at 1247.353 kb on - strand, within OH686_06195at 1247.353 kb on - strand, within OH686_06195at 1247.387 kb on + strand, within OH686_06195at 1247.388 kb on - strand, within OH686_06195at 1247.388 kb on - strand, within OH686_06195at 1247.388 kb on - strand, within OH686_06195at 1247.388 kb on - strand, within OH686_06195at 1247.388 kb on - strand, within OH686_06195

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,245,311 + OH686_06180 0.18 -1.0
1,245,334 + OH686_06180 0.20 -0.2
1,245,334 + OH686_06180 0.20 +0.4
1,245,334 + OH686_06180 0.20 +0.6
1,245,335 - OH686_06180 0.20 +1.7
1,245,335 - OH686_06180 0.20 +2.4
1,245,335 - OH686_06180 0.20 +1.6
1,245,335 - OH686_06180 0.20 +2.0
1,245,335 - OH686_06180 0.20 -1.1
1,245,335 - OH686_06180 0.20 -0.1
1,245,352 + OH686_06180 0.22 +2.3
1,245,352 + OH686_06180 0.22 +1.4
1,245,352 + OH686_06180 0.22 -0.4
1,245,353 - OH686_06180 0.22 -1.1
1,245,353 - OH686_06180 0.22 -0.6
1,245,353 - OH686_06180 0.22 +1.6
1,245,353 - OH686_06180 0.22 +0.5
1,245,353 - OH686_06180 0.22 +2.3
1,245,353 - OH686_06180 0.22 +0.3
1,245,571 + OH686_06180 0.41 +2.0
1,245,571 + OH686_06180 0.41 -1.2
1,245,571 + OH686_06180 0.41 -1.8
1,245,571 + OH686_06180 0.41 +0.0
1,245,571 + OH686_06180 0.41 -2.3
1,245,571 + OH686_06180 0.41 +0.7
1,245,571 + OH686_06180 0.41 +0.1
1,245,571 + OH686_06180 0.41 +1.7
1,245,571 + OH686_06180 0.41 -0.7
1,245,572 - OH686_06180 0.41 +1.9
1,245,572 - OH686_06180 0.41 +1.3
1,245,572 - OH686_06180 0.41 +0.7
1,245,572 - OH686_06180 0.41 +0.1
1,245,572 - OH686_06180 0.41 -0.1
1,245,572 - OH686_06180 0.41 -0.6
1,245,572 - OH686_06180 0.41 -1.5
1,245,572 - OH686_06180 0.41 -0.5
1,245,572 - OH686_06180 0.41 +1.8
1,245,653 - OH686_06180 0.48 -1.4
1,245,793 + OH686_06180 0.60 +1.4
1,245,793 + OH686_06180 0.60 +0.4
1,245,793 + OH686_06180 0.60 +1.4
1,245,793 + OH686_06180 0.60 -3.4
1,245,793 + OH686_06180 0.60 +0.4
1,245,794 - OH686_06180 0.60 -2.5
1,245,794 - OH686_06180 0.60 +1.1
1,245,835 + OH686_06180 0.64 -1.8
1,245,836 - OH686_06180 0.64 -0.5
1,245,836 - OH686_06180 0.64 -0.1
1,245,836 - OH686_06180 0.64 -1.8
1,245,836 - OH686_06180 0.64 -1.2
1,245,886 + OH686_06180 0.68 +1.7
1,245,886 + OH686_06180 0.68 +0.2
1,245,887 - OH686_06180 0.68 -0.2
1,245,887 - OH686_06180 0.68 -2.7
1,245,887 - OH686_06180 0.68 +0.3
1,245,887 - OH686_06180 0.68 -2.1
1,246,045 + OH686_06180 0.82 +0.7
1,246,093 + OH686_06180 0.86 -2.8
1,246,094 - OH686_06180 0.86 +2.4
1,246,105 + OH686_06180 0.87 -0.5
1,246,105 + OH686_06180 0.87 -1.8
1,246,105 + OH686_06180 0.87 -2.6
1,246,105 + OH686_06180 0.87 -3.2
1,246,105 + OH686_06180 0.87 -2.3
1,246,105 + OH686_06180 0.87 -0.2
1,246,105 + OH686_06180 0.87 -2.7
1,246,105 + OH686_06180 0.87 +1.0
1,246,105 + OH686_06180 0.87 +0.0
1,246,105 + OH686_06180 0.87 -1.1
1,246,106 - OH686_06180 0.87 -1.1
1,246,106 - OH686_06180 0.87 +0.3
1,246,106 - OH686_06180 0.87 +1.2
1,246,106 - OH686_06180 0.87 -0.8
1,246,106 - OH686_06180 0.87 -0.0
1,246,106 - OH686_06180 0.87 -3.3
1,246,106 - OH686_06180 0.87 +0.2
1,246,106 - OH686_06180 0.87 -0.9
1,246,106 - OH686_06180 0.87 +1.3
1,246,106 - OH686_06180 0.87 -0.4
1,246,106 - OH686_06180 0.87 -3.0
1,246,117 + OH686_06180 0.88 +0.8
1,246,117 + OH686_06180 0.88 +0.7
1,246,117 + OH686_06180 0.88 +0.4
1,246,117 + OH686_06180 0.88 +0.3
1,246,117 + OH686_06180 0.88 -3.0
1,246,117 + OH686_06180 0.88 +0.1
1,246,117 + OH686_06180 0.88 +1.1
1,246,117 + OH686_06180 0.88 -1.1
1,246,118 - OH686_06180 0.88 +1.4
1,246,118 - OH686_06180 0.88 -1.5
1,246,118 - OH686_06180 0.88 -1.9
1,246,118 - OH686_06180 0.88 +0.2
1,246,118 - OH686_06180 0.88 -1.2
1,246,118 - OH686_06180 0.88 +0.4
1,246,118 - OH686_06180 0.88 +1.2
1,246,118 - OH686_06180 0.88 -2.3
1,246,121 + OH686_06180 0.88 -1.9
1,246,130 + OH686_06180 0.89 -1.6
1,246,131 - OH686_06180 0.89 -0.5
1,246,131 - OH686_06180 0.89 -1.2
1,246,131 - OH686_06180 0.89 -3.1
1,246,290 + OH686_06185 0.21 -3.5
1,246,334 + OH686_06185 0.48 -1.9
1,246,530 + +0.8
1,246,531 - +0.6
1,246,552 + +1.5
1,246,552 + -1.1
1,246,552 + +2.6
1,246,552 + -0.1
1,246,553 - -2.8
1,246,560 + +2.2
1,246,560 + -1.1
1,246,561 - +0.4
1,246,561 - +0.2
1,246,561 - +1.2
1,246,561 - -2.3
1,246,822 - OH686_06190 0.83 -1.5
1,247,201 + OH686_06195 0.23 -1.2
1,247,202 - OH686_06195 0.23 -2.8
1,247,352 + OH686_06195 0.36 -2.8
1,247,352 + OH686_06195 0.36 -3.0
1,247,353 - OH686_06195 0.36 -2.0
1,247,353 - OH686_06195 0.36 -0.8
1,247,353 - OH686_06195 0.36 -0.7
1,247,353 - OH686_06195 0.36 +0.3
1,247,387 + OH686_06195 0.39 -3.0
1,247,388 - OH686_06195 0.39 -2.9
1,247,388 - OH686_06195 0.39 -0.9
1,247,388 - OH686_06195 0.39 -0.8
1,247,388 - OH686_06195 0.39 +1.5
1,247,388 - OH686_06195 0.39 +0.4

Or see this region's nucleotide sequence