Strain Fitness in Pseudomonas sp. S08-1 around OH686_04290

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_04280 and OH686_04285 are separated by 42 nucleotidesOH686_04285 and OH686_04290 overlap by 4 nucleotidesOH686_04290 and OH686_04295 are separated by 1 nucleotidesOH686_04295 and OH686_04300 are separated by 83 nucleotides OH686_04280: OH686_04280 - hypothetical protein, at 888,700 to 888,963 _04280 OH686_04285: OH686_04285 - Rhomboid protease GlpG , at 889,006 to 889,866 _04285 OH686_04290: OH686_04290 - ase-related protein, at 889,863 to 890,837 _04290 OH686_04295: OH686_04295 - NAD kinase , at 890,839 to 891,726 _04295 OH686_04300: OH686_04300 - hypothetical protein, at 891,810 to 892,739 _04300 Position (kb) 889 890 891Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 888.918 kb on - strand, within OH686_04280at 888.918 kb on - strand, within OH686_04280at 888.918 kb on - strand, within OH686_04280at 888.989 kb on + strandat 888.989 kb on + strandat 888.989 kb on + strandat 888.989 kb on + strandat 888.989 kb on + strandat 888.989 kb on + strandat 888.990 kb on - strandat 888.990 kb on - strandat 889.008 kb on - strandat 889.181 kb on + strand, within OH686_04285at 889.181 kb on + strand, within OH686_04285at 889.221 kb on - strand, within OH686_04285at 889.235 kb on + strand, within OH686_04285at 889.235 kb on + strand, within OH686_04285at 889.235 kb on + strand, within OH686_04285at 889.235 kb on + strand, within OH686_04285at 889.487 kb on + strand, within OH686_04285at 889.487 kb on + strand, within OH686_04285at 889.487 kb on + strand, within OH686_04285at 889.487 kb on + strand, within OH686_04285at 889.487 kb on + strand, within OH686_04285at 889.487 kb on + strand, within OH686_04285at 889.488 kb on - strand, within OH686_04285at 889.493 kb on + strand, within OH686_04285at 889.493 kb on + strand, within OH686_04285at 889.493 kb on + strand, within OH686_04285at 889.494 kb on - strand, within OH686_04285at 889.494 kb on - strand, within OH686_04285at 889.494 kb on - strand, within OH686_04285at 889.494 kb on - strand, within OH686_04285at 889.494 kb on - strand, within OH686_04285at 889.494 kb on - strand, within OH686_04285at 889.504 kb on + strand, within OH686_04285at 889.504 kb on + strand, within OH686_04285at 889.505 kb on - strand, within OH686_04285at 889.505 kb on - strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.703 kb on + strand, within OH686_04285at 889.704 kb on - strand, within OH686_04285at 889.704 kb on - strand, within OH686_04285at 889.704 kb on - strand, within OH686_04285at 889.704 kb on - strand, within OH686_04285at 889.704 kb on - strand, within OH686_04285at 889.704 kb on - strand, within OH686_04285at 889.887 kb on + strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.943 kb on - strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.961 kb on - strand, within OH686_04290at 889.961 kb on - strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.976 kb on - strand, within OH686_04290at 889.976 kb on - strand, within OH686_04290at 890.065 kb on + strand, within OH686_04290at 890.065 kb on + strand, within OH686_04290at 890.066 kb on - strand, within OH686_04290at 890.142 kb on + strand, within OH686_04290at 890.142 kb on + strand, within OH686_04290at 890.142 kb on + strand, within OH686_04290at 890.155 kb on + strand, within OH686_04290at 890.155 kb on + strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.572 kb on + strand, within OH686_04290at 890.572 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 891.760 kb on - strandat 891.760 kb on - strandat 891.798 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
888,918 - OH686_04280 0.83 -2.7
888,918 - OH686_04280 0.83 +1.5
888,918 - OH686_04280 0.83 -0.7
888,989 + -1.0
888,989 + +0.4
888,989 + -0.7
888,989 + -0.0
888,989 + -0.7
888,989 + -0.3
888,990 - -1.3
888,990 - +0.0
889,008 - +0.2
889,181 + OH686_04285 0.20 +0.3
889,181 + OH686_04285 0.20 -0.2
889,221 - OH686_04285 0.25 -1.9
889,235 + OH686_04285 0.27 +1.7
889,235 + OH686_04285 0.27 -0.5
889,235 + OH686_04285 0.27 +2.2
889,235 + OH686_04285 0.27 +0.1
889,487 + OH686_04285 0.56 +0.1
889,487 + OH686_04285 0.56 -1.1
889,487 + OH686_04285 0.56 +0.5
889,487 + OH686_04285 0.56 +0.2
889,487 + OH686_04285 0.56 -0.2
889,487 + OH686_04285 0.56 +1.3
889,488 - OH686_04285 0.56 +1.2
889,493 + OH686_04285 0.57 -1.0
889,493 + OH686_04285 0.57 +3.6
889,493 + OH686_04285 0.57 -0.7
889,494 - OH686_04285 0.57 +2.7
889,494 - OH686_04285 0.57 -1.9
889,494 - OH686_04285 0.57 -0.0
889,494 - OH686_04285 0.57 -0.6
889,494 - OH686_04285 0.57 -1.9
889,494 - OH686_04285 0.57 +0.1
889,504 + OH686_04285 0.58 +0.7
889,504 + OH686_04285 0.58 +1.3
889,505 - OH686_04285 0.58 -0.0
889,505 - OH686_04285 0.58 +0.1
889,703 + OH686_04285 0.81 -0.6
889,703 + OH686_04285 0.81 -0.6
889,703 + OH686_04285 0.81 -1.2
889,703 + OH686_04285 0.81 +0.4
889,703 + OH686_04285 0.81 -1.2
889,703 + OH686_04285 0.81 +1.8
889,703 + OH686_04285 0.81 +2.0
889,703 + OH686_04285 0.81 +0.6
889,704 - OH686_04285 0.81 -0.8
889,704 - OH686_04285 0.81 -1.9
889,704 - OH686_04285 0.81 +1.1
889,704 - OH686_04285 0.81 +0.2
889,704 - OH686_04285 0.81 +0.5
889,704 - OH686_04285 0.81 +1.3
889,887 + -0.5
889,888 - +0.3
889,888 - -2.5
889,888 - -1.5
889,888 - +0.5
889,943 - +0.6
889,960 + -1.9
889,960 + -1.8
889,960 + -2.2
889,960 + -2.7
889,960 + -2.0
889,960 + -3.3
889,960 + -1.1
889,960 + -2.5
889,961 - OH686_04290 0.10 -2.2
889,961 - OH686_04290 0.10 +1.9
889,975 + OH686_04290 0.11 -2.0
889,975 + OH686_04290 0.11 -2.8
889,975 + OH686_04290 0.11 +0.2
889,975 + OH686_04290 0.11 -3.4
889,976 - OH686_04290 0.12 -1.2
889,976 - OH686_04290 0.12 -1.0
890,065 + OH686_04290 0.21 -3.1
890,065 + OH686_04290 0.21 +0.4
890,066 - OH686_04290 0.21 -1.6
890,142 + OH686_04290 0.29 -0.0
890,142 + OH686_04290 0.29 -0.5
890,142 + OH686_04290 0.29 -2.0
890,155 + OH686_04290 0.30 -3.5
890,155 + OH686_04290 0.30 -3.9
890,156 - OH686_04290 0.30 -0.6
890,156 - OH686_04290 0.30 -1.7
890,156 - OH686_04290 0.30 -2.7
890,156 - OH686_04290 0.30 -3.6
890,156 - OH686_04290 0.30 -3.4
890,156 - OH686_04290 0.30 -1.7
890,156 - OH686_04290 0.30 -2.4
890,194 + OH686_04290 0.34 -1.9
890,194 + OH686_04290 0.34 -0.3
890,194 + OH686_04290 0.34 -1.2
890,194 + OH686_04290 0.34 -3.2
890,195 - OH686_04290 0.34 -2.6
890,195 - OH686_04290 0.34 -2.2
890,195 - OH686_04290 0.34 -2.4
890,195 - OH686_04290 0.34 -1.3
890,572 + OH686_04290 0.73 -2.6
890,572 + OH686_04290 0.73 -3.4
890,590 + OH686_04290 0.75 +0.0
890,590 + OH686_04290 0.75 -3.7
890,590 + OH686_04290 0.75 -1.7
890,590 + OH686_04290 0.75 -2.5
890,590 + OH686_04290 0.75 -0.6
890,590 + OH686_04290 0.75 -2.6
890,591 - OH686_04290 0.75 -3.6
890,591 - OH686_04290 0.75 -2.1
890,591 - OH686_04290 0.75 -2.9
890,591 - OH686_04290 0.75 -1.6
890,591 - OH686_04290 0.75 -3.1
891,760 - +0.7
891,760 - +0.0
891,798 + +0.5

Or see this region's nucleotide sequence