Strain Fitness in Pseudomonas sp. S08-1 around OH686_01115

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01110 and OH686_01115 overlap by 4 nucleotidesOH686_01115 and OH686_01120 are separated by 2 nucleotidesOH686_01120 and OH686_01125 are separated by 132 nucleotidesOH686_01125 and OH686_01130 overlap by 4 nucleotides OH686_01110: OH686_01110 - putative baseplate assembly protein, at 252,419 to 254,989 _01110 OH686_01115: OH686_01115 - hypothetical protein, at 254,986 to 255,354 _01115 OH686_01120: OH686_01120 - hypothetical protein, at 255,357 to 255,677 _01120 OH686_01125: OH686_01125 - Protein previously called VgrG, at 255,810 to 256,322 _01125 OH686_01130: OH686_01130 - hypothetical protein, at 256,319 to 257,458 _01130 Position (kb) 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 254.011 kb on + strand, within OH686_01110at 254.011 kb on + strand, within OH686_01110at 254.012 kb on - strand, within OH686_01110at 254.151 kb on + strand, within OH686_01110at 254.151 kb on + strand, within OH686_01110at 254.152 kb on - strand, within OH686_01110at 254.152 kb on - strand, within OH686_01110at 254.241 kb on + strand, within OH686_01110at 254.241 kb on + strand, within OH686_01110at 254.242 kb on - strand, within OH686_01110at 254.242 kb on - strand, within OH686_01110at 254.298 kb on + strand, within OH686_01110at 254.298 kb on + strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.328 kb on + strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.349 kb on + strand, within OH686_01110at 254.349 kb on + strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.640 kb on + strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.806 kb on + strandat 254.806 kb on + strandat 254.806 kb on + strandat 254.806 kb on + strandat 254.807 kb on - strandat 254.807 kb on - strandat 254.916 kb on + strandat 254.916 kb on + strandat 254.917 kb on - strandat 254.917 kb on - strandat 254.982 kb on + strandat 254.982 kb on + strandat 254.982 kb on + strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 255.047 kb on + strand, within OH686_01115at 255.329 kb on + strandat 255.330 kb on - strandat 255.404 kb on + strand, within OH686_01120at 255.404 kb on + strand, within OH686_01120at 255.442 kb on - strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.678 kb on - strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.756 kb on + strandat 255.756 kb on + strandat 255.757 kb on - strandat 255.757 kb on - strandat 255.812 kb on - strandat 255.812 kb on - strandat 255.812 kb on - strandat 255.855 kb on + strandat 255.855 kb on + strandat 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 256.303 kb on + strandat 256.304 kb on - strandat 256.306 kb on + strandat 256.306 kb on + strandat 256.306 kb on + strandat 256.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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254,011 + OH686_01110 0.62 +2.0
254,011 + OH686_01110 0.62 -2.2
254,012 - OH686_01110 0.62 +0.2
254,151 + OH686_01110 0.67 +0.6
254,151 + OH686_01110 0.67 +0.7
254,152 - OH686_01110 0.67 -1.6
254,152 - OH686_01110 0.67 -1.7
254,241 + OH686_01110 0.71 -1.0
254,241 + OH686_01110 0.71 -0.5
254,242 - OH686_01110 0.71 +0.1
254,242 - OH686_01110 0.71 -3.3
254,298 + OH686_01110 0.73 -0.8
254,298 + OH686_01110 0.73 -1.5
254,299 - OH686_01110 0.73 +0.8
254,299 - OH686_01110 0.73 +1.1
254,299 - OH686_01110 0.73 -0.0
254,328 + OH686_01110 0.74 -0.2
254,329 - OH686_01110 0.74 -2.9
254,329 - OH686_01110 0.74 +0.6
254,329 - OH686_01110 0.74 -0.4
254,349 + OH686_01110 0.75 +0.7
254,349 + OH686_01110 0.75 +0.9
254,350 - OH686_01110 0.75 +0.9
254,350 - OH686_01110 0.75 +0.2
254,350 - OH686_01110 0.75 -0.3
254,350 - OH686_01110 0.75 -1.1
254,472 + OH686_01110 0.80 +0.2
254,472 + OH686_01110 0.80 +1.2
254,472 + OH686_01110 0.80 -2.7
254,472 + OH686_01110 0.80 -2.1
254,472 + OH686_01110 0.80 -0.3
254,472 + OH686_01110 0.80 -1.5
254,472 + OH686_01110 0.80 +0.9
254,473 - OH686_01110 0.80 -2.1
254,473 - OH686_01110 0.80 -0.7
254,473 - OH686_01110 0.80 -0.0
254,473 - OH686_01110 0.80 +1.5
254,640 + OH686_01110 0.86 -0.3
254,641 - OH686_01110 0.86 -1.7
254,641 - OH686_01110 0.86 -2.5
254,641 - OH686_01110 0.86 -3.5
254,806 + +0.3
254,806 + +0.6
254,806 + +0.0
254,806 + +1.1
254,807 - +1.7
254,807 - +1.4
254,916 + +1.0
254,916 + +0.7
254,917 - +0.6
254,917 - +0.8
254,982 + +1.9
254,982 + +0.4
254,982 + +2.0
254,983 - +3.1
254,983 - +2.0
254,983 - -0.9
254,983 - -0.0
254,983 - -0.1
254,983 - +0.3
255,047 + OH686_01115 0.17 -3.3
255,329 + -2.1
255,330 - -2.9
255,404 + OH686_01120 0.15 +1.5
255,404 + OH686_01120 0.15 -0.2
255,442 - OH686_01120 0.26 +1.2
255,550 + OH686_01120 0.60 +0.4
255,550 + OH686_01120 0.60 -0.9
255,550 + OH686_01120 0.60 +1.1
255,550 + OH686_01120 0.60 -0.2
255,550 + OH686_01120 0.60 +1.4
255,550 + OH686_01120 0.60 -0.5
255,551 - OH686_01120 0.60 +1.9
255,551 - OH686_01120 0.60 +2.0
255,551 - OH686_01120 0.60 -1.3
255,551 - OH686_01120 0.60 -0.8
255,551 - OH686_01120 0.60 +2.1
255,678 - +0.8
255,746 + -3.4
255,746 + -2.2
255,746 + -0.9
255,746 + +0.3
255,746 + -0.0
255,746 + -1.3
255,746 + +0.4
255,746 + -1.4
255,746 + -1.0
255,746 + +0.9
255,746 + +1.5
255,747 - -1.5
255,747 - +0.7
255,747 - -0.6
255,747 - -3.2
255,747 - +1.2
255,747 - +0.3
255,747 - +0.7
255,747 - +2.2
255,747 - -0.1
255,747 - +0.0
255,756 + -0.0
255,756 + +1.0
255,757 - +0.8
255,757 - +1.3
255,812 - -1.8
255,812 - -2.3
255,812 - +0.5
255,855 + -0.9
255,855 + +0.6
255,892 + OH686_01125 0.16 -2.5
255,892 + OH686_01125 0.16 -0.4
255,892 + OH686_01125 0.16 -0.9
255,892 + OH686_01125 0.16 +2.8
255,892 + OH686_01125 0.16 +1.1
255,892 + OH686_01125 0.16 -1.3
255,892 + OH686_01125 0.16 -0.2
255,892 + OH686_01125 0.16 -0.1
255,892 + OH686_01125 0.16 -0.6
255,892 + OH686_01125 0.16 +0.8
255,892 + OH686_01125 0.16 -1.4
255,892 + OH686_01125 0.16 +0.1
255,892 + OH686_01125 0.16 -0.1
255,892 + OH686_01125 0.16 +3.3
255,892 + OH686_01125 0.16 +1.3
255,892 + OH686_01125 0.16 +1.4
255,892 + OH686_01125 0.16 -0.9
255,892 + OH686_01125 0.16 +0.2
255,892 + OH686_01125 0.16 +0.3
255,892 + OH686_01125 0.16 -1.0
255,892 + OH686_01125 0.16 -0.3
255,893 - OH686_01125 0.16 -0.6
255,893 - OH686_01125 0.16 -1.5
255,893 - OH686_01125 0.16 -1.0
255,893 - OH686_01125 0.16 -0.5
255,893 - OH686_01125 0.16 +1.9
255,893 - OH686_01125 0.16 +1.3
255,893 - OH686_01125 0.16 +0.2
255,893 - OH686_01125 0.16 +1.0
255,893 - OH686_01125 0.16 -1.6
255,893 - OH686_01125 0.16 +2.1
255,893 - OH686_01125 0.16 +1.0
255,893 - OH686_01125 0.16 +1.0
255,893 - OH686_01125 0.16 +2.2
255,893 - OH686_01125 0.16 -2.1
255,893 - OH686_01125 0.16 +1.9
255,893 - OH686_01125 0.16 -0.4
255,893 - OH686_01125 0.16 -0.5
256,303 + +1.2
256,304 - +1.0
256,306 + +0.5
256,306 + -2.4
256,306 + -0.1
256,307 - -1.3

Or see this region's nucleotide sequence