Strain Fitness in Pseudomonas sp. S08-1 around OH686_00145

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00135 and OH686_00140 overlap by 4 nucleotidesOH686_00140 and OH686_00145 are separated by 4 nucleotidesOH686_00145 and OH686_00150 are separated by 55 nucleotidesOH686_00150 and OH686_00155 are separated by 10 nucleotides OH686_00135: OH686_00135 - NADH oxidoreductase (quinone), F subunit, at 28,189 to 29,547 _00135 OH686_00140: OH686_00140 - NADH-ubiquinone oxidoreductase chain E , at 29,544 to 30,044 _00140 OH686_00145: OH686_00145 - NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D , at 30,049 to 31,830 _00145 OH686_00150: OH686_00150 - NADH-ubiquinone oxidoreductase chain B , at 31,886 to 32,563 _00150 OH686_00155: OH686_00155 - NADH ubiquinone oxidoreductase chain A , at 32,574 to 32,987 _00155 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 29.108 kb on + strand, within OH686_00135at 29.108 kb on + strand, within OH686_00135at 29.109 kb on - strand, within OH686_00135at 29.123 kb on + strand, within OH686_00135at 29.127 kb on + strand, within OH686_00135at 29.127 kb on + strand, within OH686_00135at 29.127 kb on + strand, within OH686_00135at 29.128 kb on - strand, within OH686_00135at 29.128 kb on - strand, within OH686_00135at 29.551 kb on + strandat 29.552 kb on - strandat 29.552 kb on - strandat 29.596 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.818 kb on + strand, within OH686_00140at 29.819 kb on - strand, within OH686_00140at 29.819 kb on - strand, within OH686_00140at 29.819 kb on - strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.878 kb on + strand, within OH686_00140at 29.879 kb on - strand, within OH686_00140at 29.879 kb on - strand, within OH686_00140at 29.959 kb on + strand, within OH686_00140at 29.959 kb on + strand, within OH686_00140at 29.960 kb on - strand, within OH686_00140at 29.960 kb on - strand, within OH686_00140at 30.069 kb on + strandat 30.092 kb on + strandat 30.092 kb on + strandat 30.093 kb on - strandat 30.183 kb on - strandat 30.183 kb on - strandat 30.212 kb on + strandat 30.213 kb on - strandat 30.213 kb on - strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.215 kb on + strandat 30.216 kb on - strandat 30.216 kb on - strandat 30.216 kb on - strandat 30.374 kb on + strand, within OH686_00145at 30.374 kb on + strand, within OH686_00145at 30.374 kb on + strand, within OH686_00145at 30.375 kb on - strand, within OH686_00145at 30.375 kb on - strand, within OH686_00145at 30.461 kb on + strand, within OH686_00145at 30.510 kb on - strand, within OH686_00145at 30.608 kb on + strand, within OH686_00145at 30.608 kb on + strand, within OH686_00145at 30.608 kb on + strand, within OH686_00145at 30.609 kb on - strand, within OH686_00145at 30.609 kb on - strand, within OH686_00145at 30.628 kb on - strand, within OH686_00145at 30.642 kb on + strand, within OH686_00145at 30.643 kb on - strand, within OH686_00145at 30.668 kb on + strand, within OH686_00145at 30.668 kb on + strand, within OH686_00145at 30.669 kb on - strand, within OH686_00145at 30.870 kb on + strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.871 kb on - strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.872 kb on + strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.873 kb on - strand, within OH686_00145at 30.989 kb on + strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 30.990 kb on - strand, within OH686_00145at 31.037 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.205 kb on + strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.206 kb on - strand, within OH686_00145at 31.415 kb on + strand, within OH686_00145at 31.415 kb on + strand, within OH686_00145at 31.439 kb on + strand, within OH686_00145at 31.440 kb on - strand, within OH686_00145at 31.528 kb on - strand, within OH686_00145at 31.550 kb on + strand, within OH686_00145at 31.551 kb on - strand, within OH686_00145at 31.625 kb on + strand, within OH686_00145at 31.625 kb on + strand, within OH686_00145at 31.638 kb on - strand, within OH686_00145at 31.796 kb on + strandat 31.796 kb on + strandat 31.796 kb on + strandat 31.796 kb on + strandat 31.797 kb on - strandat 31.797 kb on - strandat 31.854 kb on + strandat 31.854 kb on + strandat 31.854 kb on + strandat 31.855 kb on - strandat 31.855 kb on - strandat 31.855 kb on - strandat 31.855 kb on - strandat 31.855 kb on - strandat 31.971 kb on + strand, within OH686_00150at 31.971 kb on + strand, within OH686_00150at 31.971 kb on + strand, within OH686_00150at 31.971 kb on + strand, within OH686_00150at 31.971 kb on + strand, within OH686_00150at 31.972 kb on - strand, within OH686_00150at 31.972 kb on - strand, within OH686_00150at 31.972 kb on - strand, within OH686_00150at 31.972 kb on - strand, within OH686_00150at 32.088 kb on + strand, within OH686_00150at 32.088 kb on + strand, within OH686_00150at 32.089 kb on - strand, within OH686_00150at 32.089 kb on - strand, within OH686_00150at 32.089 kb on - strand, within OH686_00150at 32.089 kb on - strand, within OH686_00150at 32.133 kb on + strand, within OH686_00150at 32.133 kb on + strand, within OH686_00150at 32.134 kb on - strand, within OH686_00150at 32.134 kb on - strand, within OH686_00150at 32.134 kb on - strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.142 kb on + strand, within OH686_00150at 32.143 kb on - strand, within OH686_00150at 32.143 kb on - strand, within OH686_00150at 32.143 kb on - strand, within OH686_00150at 32.143 kb on - strand, within OH686_00150at 32.143 kb on - strand, within OH686_00150at 32.143 kb on - strand, within OH686_00150at 32.143 kb on - strand, within OH686_00150at 32.208 kb on + strand, within OH686_00150at 32.355 kb on + strand, within OH686_00150at 32.355 kb on + strand, within OH686_00150at 32.355 kb on + strand, within OH686_00150at 32.356 kb on - strand, within OH686_00150at 32.356 kb on - strand, within OH686_00150at 32.356 kb on - strand, within OH686_00150at 32.356 kb on - strand, within OH686_00150at 32.356 kb on - strand, within OH686_00150at 32.379 kb on + strand, within OH686_00150at 32.379 kb on + strand, within OH686_00150at 32.549 kb on - strandat 32.556 kb on + strandat 32.556 kb on + strandat 32.556 kb on + strandat 32.557 kb on - strandat 32.584 kb on - strandat 32.600 kb on + strandat 32.600 kb on + strandat 32.601 kb on - strandat 32.637 kb on - strand, within OH686_00155at 32.647 kb on + strand, within OH686_00155at 32.647 kb on + strand, within OH686_00155at 32.647 kb on + strand, within OH686_00155at 32.648 kb on - strand, within OH686_00155at 32.648 kb on - strand, within OH686_00155at 32.684 kb on + strand, within OH686_00155at 32.685 kb on - strand, within OH686_00155at 32.685 kb on - strand, within OH686_00155at 32.788 kb on + strand, within OH686_00155at 32.788 kb on + strand, within OH686_00155at 32.788 kb on + strand, within OH686_00155at 32.788 kb on + strand, within OH686_00155at 32.788 kb on + strand, within OH686_00155at 32.788 kb on + strand, within OH686_00155at 32.789 kb on - strand, within OH686_00155at 32.789 kb on - strand, within OH686_00155at 32.789 kb on - strand, within OH686_00155at 32.802 kb on + strand, within OH686_00155

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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29,108 + OH686_00135 0.68 -0.3
29,108 + OH686_00135 0.68 +0.3
29,109 - OH686_00135 0.68 -1.1
29,123 + OH686_00135 0.69 +0.0
29,127 + OH686_00135 0.69 -1.7
29,127 + OH686_00135 0.69 +0.0
29,127 + OH686_00135 0.69 -1.1
29,128 - OH686_00135 0.69 -0.3
29,128 - OH686_00135 0.69 +0.3
29,551 + -1.1
29,552 - -0.5
29,552 - -0.5
29,596 + OH686_00140 0.10 -0.3
29,818 + OH686_00140 0.55 -1.5
29,818 + OH686_00140 0.55 -0.5
29,818 + OH686_00140 0.55 +0.3
29,818 + OH686_00140 0.55 -1.6
29,818 + OH686_00140 0.55 -1.3
29,818 + OH686_00140 0.55 +0.0
29,819 - OH686_00140 0.55 -0.5
29,819 - OH686_00140 0.55 -0.7
29,819 - OH686_00140 0.55 -1.6
29,878 + OH686_00140 0.67 -0.3
29,878 + OH686_00140 0.67 -0.3
29,878 + OH686_00140 0.67 +0.3
29,878 + OH686_00140 0.67 +0.7
29,879 - OH686_00140 0.67 -1.9
29,879 - OH686_00140 0.67 +0.3
29,959 + OH686_00140 0.83 +0.3
29,959 + OH686_00140 0.83 -0.8
29,960 - OH686_00140 0.83 -1.8
29,960 - OH686_00140 0.83 -0.5
30,069 + +0.0
30,092 + +0.0
30,092 + -0.5
30,093 - -0.5
30,183 - +0.3
30,183 - -2.1
30,212 + -0.3
30,213 - +0.0
30,213 - +0.0
30,215 + -1.3
30,215 + +0.3
30,215 + +0.0
30,215 + +0.3
30,215 + +0.0
30,216 - +0.3
30,216 - -0.7
30,216 - -0.7
30,374 + OH686_00145 0.18 +0.0
30,374 + OH686_00145 0.18 +0.0
30,374 + OH686_00145 0.18 -0.5
30,375 - OH686_00145 0.18 +0.3
30,375 - OH686_00145 0.18 -1.7
30,461 + OH686_00145 0.23 +0.0
30,510 - OH686_00145 0.26 -0.8
30,608 + OH686_00145 0.31 +1.3
30,608 + OH686_00145 0.31 -2.3
30,608 + OH686_00145 0.31 -1.4
30,609 - OH686_00145 0.31 +1.0
30,609 - OH686_00145 0.31 +0.0
30,628 - OH686_00145 0.32 +0.0
30,642 + OH686_00145 0.33 +0.3
30,643 - OH686_00145 0.33 +0.0
30,668 + OH686_00145 0.35 +0.0
30,668 + OH686_00145 0.35 +0.3
30,669 - OH686_00145 0.35 -0.3
30,870 + OH686_00145 0.46 -0.7
30,871 - OH686_00145 0.46 +0.0
30,871 - OH686_00145 0.46 -1.1
30,871 - OH686_00145 0.46 +0.3
30,871 - OH686_00145 0.46 -1.5
30,872 + OH686_00145 0.46 -0.7
30,872 + OH686_00145 0.46 +0.3
30,872 + OH686_00145 0.46 +0.2
30,872 + OH686_00145 0.46 -0.3
30,872 + OH686_00145 0.46 +0.0
30,872 + OH686_00145 0.46 -0.5
30,872 + OH686_00145 0.46 +0.3
30,872 + OH686_00145 0.46 -0.3
30,872 + OH686_00145 0.46 -1.0
30,872 + OH686_00145 0.46 -0.3
30,872 + OH686_00145 0.46 -1.5
30,872 + OH686_00145 0.46 -0.3
30,872 + OH686_00145 0.46 +0.3
30,873 - OH686_00145 0.46 -0.3
30,873 - OH686_00145 0.46 -0.3
30,873 - OH686_00145 0.46 -0.7
30,873 - OH686_00145 0.46 +0.0
30,873 - OH686_00145 0.46 -1.5
30,873 - OH686_00145 0.46 -0.3
30,873 - OH686_00145 0.46 +0.0
30,873 - OH686_00145 0.46 -1.0
30,873 - OH686_00145 0.46 -0.5
30,873 - OH686_00145 0.46 -0.3
30,873 - OH686_00145 0.46 +0.3
30,873 - OH686_00145 0.46 -1.8
30,873 - OH686_00145 0.46 -0.5
30,989 + OH686_00145 0.53 -1.0
30,990 - OH686_00145 0.53 +0.0
30,990 - OH686_00145 0.53 -1.0
30,990 - OH686_00145 0.53 -0.7
30,990 - OH686_00145 0.53 +0.3
31,037 + OH686_00145 0.55 -1.0
31,205 + OH686_00145 0.65 -0.7
31,205 + OH686_00145 0.65 -1.3
31,205 + OH686_00145 0.65 +0.3
31,205 + OH686_00145 0.65 +0.3
31,205 + OH686_00145 0.65 +1.0
31,205 + OH686_00145 0.65 -1.5
31,205 + OH686_00145 0.65 -1.6
31,205 + OH686_00145 0.65 -0.5
31,205 + OH686_00145 0.65 -0.5
31,205 + OH686_00145 0.65 +1.3
31,205 + OH686_00145 0.65 -0.3
31,205 + OH686_00145 0.65 -0.3
31,205 + OH686_00145 0.65 -1.1
31,205 + OH686_00145 0.65 +0.0
31,205 + OH686_00145 0.65 -0.3
31,206 - OH686_00145 0.65 +0.3
31,206 - OH686_00145 0.65 +0.0
31,206 - OH686_00145 0.65 +1.3
31,206 - OH686_00145 0.65 -0.7
31,206 - OH686_00145 0.65 +0.7
31,206 - OH686_00145 0.65 -0.3
31,206 - OH686_00145 0.65 +0.3
31,206 - OH686_00145 0.65 -0.3
31,206 - OH686_00145 0.65 -1.5
31,206 - OH686_00145 0.65 -0.7
31,206 - OH686_00145 0.65 +0.3
31,415 + OH686_00145 0.77 -0.8
31,415 + OH686_00145 0.77 -1.1
31,439 + OH686_00145 0.78 -2.1
31,440 - OH686_00145 0.78 +0.3
31,528 - OH686_00145 0.83 -0.8
31,550 + OH686_00145 0.84 +0.3
31,551 - OH686_00145 0.84 -1.4
31,625 + OH686_00145 0.88 -0.7
31,625 + OH686_00145 0.88 -0.3
31,638 - OH686_00145 0.89 +0.3
31,796 + -0.3
31,796 + -0.3
31,796 + +0.0
31,796 + -0.3
31,797 - -1.4
31,797 - +0.3
31,854 + +0.0
31,854 + -0.3
31,854 + -1.0
31,855 - +1.8
31,855 - -1.0
31,855 - -0.1
31,855 - +0.4
31,855 - +1.0
31,971 + OH686_00150 0.13 +0.0
31,971 + OH686_00150 0.13 +0.3
31,971 + OH686_00150 0.13 +0.3
31,971 + OH686_00150 0.13 -2.4
31,971 + OH686_00150 0.13 +0.0
31,972 - OH686_00150 0.13 -0.3
31,972 - OH686_00150 0.13 +0.0
31,972 - OH686_00150 0.13 +0.0
31,972 - OH686_00150 0.13 -1.5
32,088 + OH686_00150 0.30 +0.0
32,088 + OH686_00150 0.30 -1.0
32,089 - OH686_00150 0.30 +0.0
32,089 - OH686_00150 0.30 -1.0
32,089 - OH686_00150 0.30 -1.4
32,089 - OH686_00150 0.30 +1.0
32,133 + OH686_00150 0.36 -0.3
32,133 + OH686_00150 0.36 +0.0
32,134 - OH686_00150 0.37 +0.0
32,134 - OH686_00150 0.37 +0.3
32,134 - OH686_00150 0.37 -0.5
32,142 + OH686_00150 0.38 -1.1
32,142 + OH686_00150 0.38 +0.0
32,142 + OH686_00150 0.38 +0.0
32,142 + OH686_00150 0.38 -1.0
32,142 + OH686_00150 0.38 -1.4
32,142 + OH686_00150 0.38 +0.0
32,142 + OH686_00150 0.38 -0.3
32,142 + OH686_00150 0.38 -1.5
32,142 + OH686_00150 0.38 -0.7
32,142 + OH686_00150 0.38 +0.0
32,142 + OH686_00150 0.38 +0.3
32,142 + OH686_00150 0.38 +0.3
32,143 - OH686_00150 0.38 -1.1
32,143 - OH686_00150 0.38 -1.8
32,143 - OH686_00150 0.38 +0.3
32,143 - OH686_00150 0.38 -0.7
32,143 - OH686_00150 0.38 +0.3
32,143 - OH686_00150 0.38 +0.0
32,143 - OH686_00150 0.38 +0.3
32,208 + OH686_00150 0.47 +0.3
32,355 + OH686_00150 0.69 +0.3
32,355 + OH686_00150 0.69 -0.3
32,355 + OH686_00150 0.69 +0.5
32,356 - OH686_00150 0.69 +0.0
32,356 - OH686_00150 0.69 -0.8
32,356 - OH686_00150 0.69 -1.6
32,356 - OH686_00150 0.69 +0.3
32,356 - OH686_00150 0.69 -1.4
32,379 + OH686_00150 0.73 -0.8
32,379 + OH686_00150 0.73 +0.0
32,549 - +0.0
32,556 + +0.0
32,556 + -0.7
32,556 + +0.0
32,557 - +0.0
32,584 - +1.2
32,600 + +0.3
32,600 + -1.5
32,601 - -2.0
32,637 - OH686_00155 0.15 -2.2
32,647 + OH686_00155 0.18 +0.3
32,647 + OH686_00155 0.18 +0.0
32,647 + OH686_00155 0.18 -1.0
32,648 - OH686_00155 0.18 +0.0
32,648 - OH686_00155 0.18 +0.3
32,684 + OH686_00155 0.27 -0.8
32,685 - OH686_00155 0.27 -0.5
32,685 - OH686_00155 0.27 -1.0
32,788 + OH686_00155 0.52 +0.3
32,788 + OH686_00155 0.52 -0.5
32,788 + OH686_00155 0.52 +0.0
32,788 + OH686_00155 0.52 +2.0
32,788 + OH686_00155 0.52 -0.8
32,788 + OH686_00155 0.52 +0.3
32,789 - OH686_00155 0.52 -0.7
32,789 - OH686_00155 0.52 -1.0
32,789 - OH686_00155 0.52 -1.8
32,802 + OH686_00155 0.55 -0.4

Or see this region's nucleotide sequence