Strain Fitness in Pseudomonas sp. S08-1 around OH686_00120

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00105 and OH686_00110 overlap by 4 nucleotidesOH686_00110 and OH686_00115 overlap by 4 nucleotidesOH686_00115 and OH686_00120 are separated by 10 nucleotidesOH686_00120 and OH686_00125 are separated by 13 nucleotides OH686_00105: OH686_00105 - NADH-ubiquinone oxidoreductase chain L , at 21,171 to 23,021 _00105 OH686_00110: OH686_00110 - NADH-ubiquinone oxidoreductase chain K , at 23,018 to 23,326 _00110 OH686_00115: OH686_00115 - NADH-ubiquinone oxidoreductase chain J , at 23,323 to 23,832 _00115 OH686_00120: OH686_00120 - NADH-ubiquinone oxidoreductase chain I , at 23,843 to 24,391 _00120 OH686_00125: OH686_00125 - NADH-ubiquinone oxidoreductase chain H , at 24,405 to 25,397 _00125 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1at 23.010 kb on + strandat 23.010 kb on + strandat 23.010 kb on + strandat 23.011 kb on - strandat 23.011 kb on - strandat 23.159 kb on + strand, within OH686_00110at 23.326 kb on + strandat 23.326 kb on + strandat 23.327 kb on - strandat 23.327 kb on - strandat 23.410 kb on + strand, within OH686_00115at 23.420 kb on + strand, within OH686_00115at 23.421 kb on - strand, within OH686_00115at 23.421 kb on - strand, within OH686_00115at 23.508 kb on - strand, within OH686_00115at 23.658 kb on - strand, within OH686_00115at 23.787 kb on + strandat 23.787 kb on + strandat 23.787 kb on + strandat 23.787 kb on + strandat 23.788 kb on - strandat 23.788 kb on - strandat 23.788 kb on - strandat 23.788 kb on - strandat 23.816 kb on + strandat 23.817 kb on - strandat 23.817 kb on - strandat 23.844 kb on + strandat 23.934 kb on + strand, within OH686_00120at 23.935 kb on - strand, within OH686_00120at 23.935 kb on - strand, within OH686_00120at 23.944 kb on - strand, within OH686_00120at 23.944 kb on - strand, within OH686_00120at 23.991 kb on + strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 23.992 kb on - strand, within OH686_00120at 24.012 kb on + strand, within OH686_00120at 24.012 kb on + strand, within OH686_00120at 24.013 kb on - strand, within OH686_00120at 24.377 kb on + strandat 24.377 kb on + strandat 24.377 kb on + strandat 24.378 kb on - strandat 24.378 kb on - strandat 24.378 kb on - strandat 24.378 kb on - strandat 24.378 kb on - strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.381 kb on + strandat 24.382 kb on - strandat 24.382 kb on - strandat 24.382 kb on - strandat 24.382 kb on - strandat 24.382 kb on - strandat 24.406 kb on + strandat 24.407 kb on - strandat 24.660 kb on + strand, within OH686_00125at 24.660 kb on + strand, within OH686_00125at 24.660 kb on + strand, within OH686_00125at 24.661 kb on - strand, within OH686_00125at 24.671 kb on - strand, within OH686_00125at 24.671 kb on - strand, within OH686_00125at 24.709 kb on + strand, within OH686_00125at 24.710 kb on - strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.803 kb on + strand, within OH686_00125at 24.804 kb on - strand, within OH686_00125at 24.853 kb on + strand, within OH686_00125at 24.931 kb on + strand, within OH686_00125at 24.932 kb on - strand, within OH686_00125at 25.016 kb on - strand, within OH686_00125

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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23,010 + -1.0
23,010 + -0.3
23,010 + +0.0
23,011 - +0.0
23,011 - -1.3
23,159 + OH686_00110 0.46 -0.5
23,326 + -0.8
23,326 + -0.5
23,327 - +0.0
23,327 - -1.0
23,410 + OH686_00115 0.17 -0.3
23,420 + OH686_00115 0.19 +0.3
23,421 - OH686_00115 0.19 -1.1
23,421 - OH686_00115 0.19 -0.7
23,508 - OH686_00115 0.36 -0.3
23,658 - OH686_00115 0.66 -0.3
23,787 + +1.0
23,787 + +0.3
23,787 + -0.3
23,787 + +0.0
23,788 - -0.5
23,788 - +0.3
23,788 - +0.0
23,788 - +0.0
23,816 + -0.5
23,817 - +0.6
23,817 - +0.0
23,844 + -2.3
23,934 + OH686_00120 0.17 -0.3
23,935 - OH686_00120 0.17 -0.3
23,935 - OH686_00120 0.17 -0.7
23,944 - OH686_00120 0.18 +0.0
23,944 - OH686_00120 0.18 -1.0
23,991 + OH686_00120 0.27 +0.0
23,992 - OH686_00120 0.27 -1.1
23,992 - OH686_00120 0.27 -1.4
23,992 - OH686_00120 0.27 -0.5
23,992 - OH686_00120 0.27 +0.3
24,012 + OH686_00120 0.31 -1.3
24,012 + OH686_00120 0.31 +0.0
24,013 - OH686_00120 0.31 -0.3
24,377 + -0.5
24,377 + -0.5
24,377 + -1.1
24,378 - -1.4
24,378 - -1.1
24,378 - -1.8
24,378 - -2.3
24,378 - -2.2
24,381 + -0.3
24,381 + -0.3
24,381 + -0.3
24,381 + +0.3
24,381 + -0.7
24,381 + +0.3
24,381 + -0.5
24,381 + -0.3
24,381 + -0.3
24,381 + -0.3
24,381 + -0.3
24,382 - +0.3
24,382 - +0.3
24,382 - -1.1
24,382 - +1.6
24,382 - +0.7
24,406 + -0.8
24,407 - -1.6
24,660 + OH686_00125 0.26 +0.3
24,660 + OH686_00125 0.26 +0.3
24,660 + OH686_00125 0.26 +0.0
24,661 - OH686_00125 0.26 +0.3
24,671 - OH686_00125 0.27 -1.6
24,671 - OH686_00125 0.27 +0.3
24,709 + OH686_00125 0.31 +0.3
24,710 - OH686_00125 0.31 -0.8
24,803 + OH686_00125 0.40 +0.0
24,803 + OH686_00125 0.40 -0.8
24,803 + OH686_00125 0.40 +0.3
24,803 + OH686_00125 0.40 +0.3
24,804 - OH686_00125 0.40 +0.3
24,853 + OH686_00125 0.45 -0.5
24,931 + OH686_00125 0.53 -0.5
24,932 - OH686_00125 0.53 +0.0
25,016 - OH686_00125 0.62 +0.3

Or see this region's nucleotide sequence