Strain Fitness in Pseudomonas simiae WCS417 around PS417_02690

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02685 and PS417_02690 overlap by 29 nucleotidesPS417_02690 and PS417_02695 are separated by 181 nucleotidesPS417_02695 and PS417_02700 are separated by 22 nucleotides PS417_02685: PS417_02685 - cation diffusion facilitator family transporter, at 614,785 to 615,690 _02685 PS417_02690: PS417_02690 - N-acylglucosamine 2-epimerase, at 615,662 to 616,780 _02690 PS417_02695: PS417_02695 - protein hupE, at 616,962 to 617,534 _02695 PS417_02700: PS417_02700 - urease accessory protein UreG, at 617,557 to 618,171 _02700 Position (kb) 615 616 617Strain fitness (log2 ratio) -1 0 1at 614.718 kb on + strandat 614.718 kb on + strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.723 kb on + strandat 614.738 kb on - strandat 615.061 kb on + strand, within PS417_02685at 615.061 kb on + strand, within PS417_02685at 615.061 kb on + strand, within PS417_02685at 615.062 kb on - strand, within PS417_02685at 615.062 kb on - strand, within PS417_02685at 615.134 kb on - strand, within PS417_02685at 615.166 kb on + strand, within PS417_02685at 615.166 kb on + strand, within PS417_02685at 615.167 kb on - strand, within PS417_02685at 615.175 kb on + strand, within PS417_02685at 615.176 kb on - strand, within PS417_02685at 615.328 kb on + strand, within PS417_02685at 615.328 kb on + strand, within PS417_02685at 615.329 kb on - strand, within PS417_02685at 615.413 kb on + strand, within PS417_02685at 615.413 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.506 kb on - strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.663 kb on + strandat 615.699 kb on + strandat 615.892 kb on + strand, within PS417_02690at 615.893 kb on - strand, within PS417_02690at 616.087 kb on + strand, within PS417_02690at 616.088 kb on - strand, within PS417_02690at 616.303 kb on - strand, within PS417_02690at 616.480 kb on - strand, within PS417_02690at 616.596 kb on + strand, within PS417_02690at 616.597 kb on - strand, within PS417_02690at 616.597 kb on - strand, within PS417_02690at 616.671 kb on + strandat 616.808 kb on - strandat 616.808 kb on - strandat 616.890 kb on + strandat 616.890 kb on + strandat 616.904 kb on - strandat 617.311 kb on - strand, within PS417_02695

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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614,718 + -0.4
614,718 + +0.5
614,719 - +0.8
614,719 - -0.1
614,719 - -0.3
614,719 - +0.1
614,719 - -0.4
614,719 - -0.2
614,719 - +0.3
614,723 + +0.5
614,738 - -0.2
615,061 + PS417_02685 0.30 -0.8
615,061 + PS417_02685 0.30 +0.3
615,061 + PS417_02685 0.30 -0.7
615,062 - PS417_02685 0.31 -1.5
615,062 - PS417_02685 0.31 +0.2
615,134 - PS417_02685 0.39 -0.0
615,166 + PS417_02685 0.42 -1.0
615,166 + PS417_02685 0.42 -0.7
615,167 - PS417_02685 0.42 -0.3
615,175 + PS417_02685 0.43 +1.5
615,176 - PS417_02685 0.43 +0.3
615,328 + PS417_02685 0.60 +1.7
615,328 + PS417_02685 0.60 -0.5
615,329 - PS417_02685 0.60 +0.5
615,413 + PS417_02685 0.69 -0.6
615,413 + PS417_02685 0.69 -0.1
615,496 + PS417_02685 0.78 +0.3
615,496 + PS417_02685 0.78 +0.6
615,496 + PS417_02685 0.78 -0.2
615,496 + PS417_02685 0.78 +0.2
615,497 - PS417_02685 0.79 +0.0
615,497 - PS417_02685 0.79 -0.3
615,497 - PS417_02685 0.79 +0.4
615,497 - PS417_02685 0.79 -0.1
615,497 - PS417_02685 0.79 +0.4
615,506 - PS417_02685 0.80 +0.8
615,542 + PS417_02685 0.84 +0.0
615,542 + PS417_02685 0.84 +0.2
615,542 + PS417_02685 0.84 -0.9
615,543 - PS417_02685 0.84 +0.0
615,543 - PS417_02685 0.84 +0.6
615,543 - PS417_02685 0.84 -0.3
615,543 - PS417_02685 0.84 +0.2
615,543 - PS417_02685 0.84 -0.5
615,663 + -1.0
615,699 + -0.0
615,892 + PS417_02690 0.21 -1.0
615,893 - PS417_02690 0.21 -0.5
616,087 + PS417_02690 0.38 +0.3
616,088 - PS417_02690 0.38 -0.8
616,303 - PS417_02690 0.57 -0.6
616,480 - PS417_02690 0.73 -0.4
616,596 + PS417_02690 0.83 -1.5
616,597 - PS417_02690 0.84 -1.3
616,597 - PS417_02690 0.84 +0.1
616,671 + -1.2
616,808 - +0.8
616,808 - +0.6
616,890 + +0.1
616,890 + +0.0
616,904 - +0.3
617,311 - PS417_02695 0.61 +0.1

Or see this region's nucleotide sequence