Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01990 and PS417_01995 are separated by 98 nucleotides PS417_01995 and PS417_02000 overlap by 21 nucleotides PS417_02000 and PS417_02005 are separated by 32 nucleotides
PS417_01990: PS417_01990 - cell division protein, at 441,508 to 443,079
_01990
PS417_01995: PS417_01995 - hypothetical protein, at 443,178 to 443,453
_01995
PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878
_02000
PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329
_02005
Position (kb) 443
444
445
446
447
448 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 442.901 kb on - strand, within PS417_01990 at 442.951 kb on + strand at 443.149 kb on + strand at 443.149 kb on + strand at 443.149 kb on + strand at 443.236 kb on + strand, within PS417_01995 at 443.255 kb on + strand, within PS417_01995 at 443.317 kb on - strand, within PS417_01995 at 443.317 kb on - strand, within PS417_01995 at 443.520 kb on - strand at 443.686 kb on - strand at 443.916 kb on - strand, within PS417_02000 at 443.964 kb on + strand, within PS417_02000 at 443.997 kb on + strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.998 kb on - strand, within PS417_02000 at 443.999 kb on + strand, within PS417_02000 at 444.037 kb on - strand, within PS417_02000 at 444.105 kb on - strand, within PS417_02000 at 444.412 kb on - strand, within PS417_02000 at 444.577 kb on - strand, within PS417_02000 at 444.702 kb on + strand, within PS417_02000 at 444.777 kb on + strand, within PS417_02000 at 444.778 kb on - strand, within PS417_02000 at 444.778 kb on - strand, within PS417_02000 at 444.801 kb on + strand, within PS417_02000 at 444.802 kb on - strand, within PS417_02000 at 444.813 kb on + strand, within PS417_02000 at 444.814 kb on - strand, within PS417_02000 at 444.814 kb on - strand, within PS417_02000 at 444.814 kb on - strand, within PS417_02000 at 445.176 kb on + strand, within PS417_02000 at 445.515 kb on + strand, within PS417_02000 at 445.516 kb on - strand, within PS417_02000 at 445.803 kb on + strand, within PS417_02000 at 445.881 kb on + strand, within PS417_02000 at 445.882 kb on - strand, within PS417_02000 at 446.190 kb on + strand, within PS417_02000 at 446.190 kb on + strand, within PS417_02000 at 446.190 kb on + strand, within PS417_02000 at 446.352 kb on + strand, within PS417_02000 at 446.352 kb on + strand at 446.353 kb on - strand, within PS417_02000 at 446.353 kb on - strand, within PS417_02000 at 446.740 kb on - strand, within PS417_02000 at 446.853 kb on + strand, within PS417_02000 at 447.141 kb on - strand, within PS417_02000 at 447.297 kb on + strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.381 kb on + strand, within PS417_02000 at 447.423 kb on + strand, within PS417_02000 at 447.537 kb on + strand at 447.615 kb on + strand at 447.616 kb on - strand at 447.739 kb on - strand at 447.796 kb on - strand at 447.796 kb on - strand at 447.908 kb on - strand at 447.908 kb on - strand at 447.929 kb on - strand at 448.013 kb on + strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.293 kb on - strand, within PS417_02005 at 448.512 kb on + strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.643 kb on + strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.649 kb on + strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.691 kb on + strand, within PS417_02005 at 448.692 kb on - strand, within PS417_02005
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 442,901 - PS417_01990 0.89 -1.3 442,951 + -0.3 443,149 + +2.8 443,149 + +0.5 443,149 + +0.1 443,236 + PS417_01995 0.21 -0.4 443,255 + PS417_01995 0.28 -0.4 443,317 - PS417_01995 0.50 -2.6 443,317 - PS417_01995 0.50 -2.1 443,520 - -3.3 443,686 - -3.0 443,916 - PS417_02000 0.11 -2.9 443,964 + PS417_02000 0.12 -3.0 443,997 + PS417_02000 0.13 -1.6 443,998 - PS417_02000 0.13 -4.9 443,998 - PS417_02000 0.13 -4.6 443,998 - PS417_02000 0.13 -4.4 443,999 + PS417_02000 0.13 -4.2 444,037 - PS417_02000 0.14 -2.0 444,105 - PS417_02000 0.15 -5.1 444,412 - PS417_02000 0.22 -5.6 444,577 - PS417_02000 0.26 -2.7 444,702 + PS417_02000 0.29 -2.4 444,777 + PS417_02000 0.30 -4.8 444,778 - PS417_02000 0.30 -2.8 444,778 - PS417_02000 0.30 -0.9 444,801 + PS417_02000 0.31 -4.3 444,802 - PS417_02000 0.31 -2.9 444,813 + PS417_02000 0.31 -5.1 444,814 - PS417_02000 0.31 -3.0 444,814 - PS417_02000 0.31 -1.9 444,814 - PS417_02000 0.31 -1.6 445,176 + PS417_02000 0.39 -3.1 445,515 + PS417_02000 0.47 -3.0 445,516 - PS417_02000 0.47 -5.5 445,803 + PS417_02000 0.53 -3.9 445,881 + PS417_02000 0.55 -0.6 445,882 - PS417_02000 0.55 -2.6 446,190 + PS417_02000 0.62 -5.3 446,190 + PS417_02000 0.62 -3.0 446,190 + PS417_02000 0.62 -2.4 446,352 + PS417_02000 0.66 -2.6 446,352 + -2.4 446,353 - PS417_02000 0.66 -3.8 446,353 - PS417_02000 0.66 -3.7 446,740 - PS417_02000 0.74 -2.1 446,853 + PS417_02000 0.77 -3.6 447,141 - PS417_02000 0.83 -4.8 447,297 + PS417_02000 0.87 -5.5 447,298 - PS417_02000 0.87 -4.0 447,298 - PS417_02000 0.87 -4.0 447,381 + PS417_02000 0.89 -1.6 447,423 + PS417_02000 0.90 -2.9 447,537 + -1.6 447,615 + -0.1 447,616 - -4.0 447,739 - -1.6 447,796 - -0.6 447,796 - +0.4 447,908 - -3.8 447,908 - -4.7 447,929 - -1.7 448,013 + -2.7 448,014 - -0.8 448,014 - -4.6 448,014 - -4.9 448,292 + PS417_02005 0.27 -4.8 448,292 + PS417_02005 0.27 -3.6 448,292 + PS417_02005 0.27 -3.7 448,292 + PS417_02005 0.27 -5.0 448,292 + PS417_02005 0.27 -3.9 448,292 + PS417_02005 0.27 -4.7 448,292 + PS417_02005 0.27 -4.6 448,293 - PS417_02005 0.27 -3.3 448,512 + PS417_02005 0.42 -3.0 448,614 - PS417_02005 0.50 -5.2 448,614 - PS417_02005 0.50 -5.8 448,643 + PS417_02005 0.52 -3.6 448,644 - PS417_02005 0.52 -5.9 448,644 - PS417_02005 0.52 -4.5 448,644 - PS417_02005 0.52 -2.9 448,644 - PS417_02005 0.52 -3.8 448,649 + PS417_02005 0.52 -5.3 448,650 - PS417_02005 0.52 -4.8 448,650 - PS417_02005 0.52 -4.6 448,691 + PS417_02005 0.55 -3.0 448,692 - PS417_02005 0.55 -3.3
Or see this region's nucleotide sequence