Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0618

Experiment: m.b. Paraquat dichloride 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0617 and Echvi_0618 overlap by 38 nucleotidesEchvi_0618 and Echvi_0619 are separated by 77 nucleotides Echvi_0617: Echvi_0617 - hypothetical protein, at 690,262 to 692,892 _0617 Echvi_0618: Echvi_0618 - Membrane carboxypeptidase/penicillin-binding protein, at 692,855 to 695,212 _0618 Echvi_0619: Echvi_0619 - excinuclease ABC, C subunit, at 695,290 to 697,092 _0619 Position (kb) 692 693 694 695 696Strain fitness (log2 ratio) -2 -1 0 1 2 3at 691.951 kb on + strand, within Echvi_0617at 692.005 kb on + strand, within Echvi_0617at 692.006 kb on - strand, within Echvi_0617at 692.006 kb on - strand, within Echvi_0617at 692.009 kb on - strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.017 kb on + strand, within Echvi_0617at 692.056 kb on + strand, within Echvi_0617at 692.056 kb on + strand, within Echvi_0617at 692.057 kb on - strand, within Echvi_0617at 692.057 kb on - strand, within Echvi_0617at 692.169 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.179 kb on + strand, within Echvi_0617at 692.204 kb on - strand, within Echvi_0617at 692.245 kb on + strand, within Echvi_0617at 692.246 kb on - strand, within Echvi_0617at 692.261 kb on + strand, within Echvi_0617at 692.262 kb on - strand, within Echvi_0617at 692.273 kb on + strand, within Echvi_0617at 692.273 kb on + strand, within Echvi_0617at 692.344 kb on + strand, within Echvi_0617at 692.345 kb on - strand, within Echvi_0617at 692.347 kb on - strand, within Echvi_0617at 692.391 kb on + strand, within Echvi_0617at 692.391 kb on + strand, within Echvi_0617at 692.396 kb on + strand, within Echvi_0617at 692.397 kb on - strand, within Echvi_0617at 692.469 kb on - strand, within Echvi_0617at 692.505 kb on + strand, within Echvi_0617at 692.528 kb on + strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.529 kb on - strand, within Echvi_0617at 692.530 kb on + strand, within Echvi_0617at 692.531 kb on - strand, within Echvi_0617at 692.531 kb on - strand, within Echvi_0617at 692.532 kb on + strand, within Echvi_0617at 692.533 kb on - strand, within Echvi_0617at 692.533 kb on - strand, within Echvi_0617at 692.533 kb on - strand, within Echvi_0617at 692.558 kb on + strand, within Echvi_0617at 692.635 kb on - strandat 692.658 kb on - strandat 692.770 kb on + strandat 692.792 kb on + strandat 692.837 kb on + strandat 695.197 kb on + strandat 695.305 kb on + strandat 695.356 kb on + strandat 695.373 kb on + strandat 695.374 kb on - strandat 695.374 kb on - strandat 695.384 kb on - strandat 695.384 kb on - strandat 695.426 kb on - strandat 695.496 kb on + strand, within Echvi_0619at 695.496 kb on + strand, within Echvi_0619at 695.569 kb on - strand, within Echvi_0619at 695.569 kb on - strand, within Echvi_0619at 695.596 kb on + strand, within Echvi_0619at 695.596 kb on + strand, within Echvi_0619at 695.603 kb on - strand, within Echvi_0619at 695.603 kb on - strand, within Echvi_0619at 695.606 kb on + strand, within Echvi_0619at 695.636 kb on + strand, within Echvi_0619at 695.636 kb on + strand, within Echvi_0619at 695.636 kb on + strand, within Echvi_0619at 695.637 kb on - strand, within Echvi_0619at 695.637 kb on - strand, within Echvi_0619at 695.713 kb on - strand, within Echvi_0619at 695.713 kb on - strand, within Echvi_0619at 695.713 kb on - strand, within Echvi_0619at 695.715 kb on - strand, within Echvi_0619at 695.776 kb on - strandat 695.776 kb on - strand, within Echvi_0619at 695.871 kb on - strand, within Echvi_0619at 696.020 kb on - strand, within Echvi_0619at 696.069 kb on - strand, within Echvi_0619

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.25 mg/ml
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691,951 + Echvi_0617 0.64 +0.1
692,005 + Echvi_0617 0.66 -0.2
692,006 - Echvi_0617 0.66 +2.4
692,006 - Echvi_0617 0.66 +0.2
692,009 - Echvi_0617 0.66 +1.0
692,017 + Echvi_0617 0.67 +0.4
692,017 + Echvi_0617 0.67 +0.0
692,017 + Echvi_0617 0.67 +0.2
692,017 + Echvi_0617 0.67 -0.3
692,056 + Echvi_0617 0.68 +0.5
692,056 + Echvi_0617 0.68 +0.3
692,057 - Echvi_0617 0.68 +0.4
692,057 - Echvi_0617 0.68 +1.4
692,169 + Echvi_0617 0.72 -1.6
692,179 + Echvi_0617 0.73 +0.2
692,179 + Echvi_0617 0.73 -0.3
692,179 + Echvi_0617 0.73 -1.1
692,179 + Echvi_0617 0.73 -0.7
692,204 - Echvi_0617 0.74 +1.8
692,245 + Echvi_0617 0.75 +0.8
692,246 - Echvi_0617 0.75 -0.6
692,261 + Echvi_0617 0.76 -0.2
692,262 - Echvi_0617 0.76 +1.2
692,273 + Echvi_0617 0.76 -0.3
692,273 + Echvi_0617 0.76 -1.7
692,344 + Echvi_0617 0.79 -0.6
692,345 - Echvi_0617 0.79 -0.1
692,347 - Echvi_0617 0.79 -0.6
692,391 + Echvi_0617 0.81 -0.3
692,391 + Echvi_0617 0.81 +0.4
692,396 + Echvi_0617 0.81 +0.3
692,397 - Echvi_0617 0.81 +0.6
692,469 - Echvi_0617 0.84 -0.1
692,505 + Echvi_0617 0.85 -1.9
692,528 + Echvi_0617 0.86 +0.7
692,529 - Echvi_0617 0.86 +0.3
692,529 - Echvi_0617 0.86 +0.2
692,529 - Echvi_0617 0.86 +0.4
692,529 - Echvi_0617 0.86 +0.5
692,529 - Echvi_0617 0.86 +1.0
692,529 - Echvi_0617 0.86 -0.8
692,530 + Echvi_0617 0.86 -0.7
692,531 - Echvi_0617 0.86 +0.4
692,531 - Echvi_0617 0.86 +1.0
692,532 + Echvi_0617 0.86 -1.4
692,533 - Echvi_0617 0.86 -0.2
692,533 - Echvi_0617 0.86 -0.1
692,533 - Echvi_0617 0.86 +0.4
692,558 + Echvi_0617 0.87 +0.1
692,635 - -0.1
692,658 - -1.0
692,770 + -0.5
692,792 + -1.6
692,837 + +0.6
695,197 + +0.4
695,305 + -0.7
695,356 + -0.4
695,373 + -0.2
695,374 - +0.5
695,374 - -1.3
695,384 - +0.4
695,384 - +0.3
695,426 - -0.8
695,496 + Echvi_0619 0.11 -2.0
695,496 + Echvi_0619 0.11 -0.2
695,569 - Echvi_0619 0.15 +0.4
695,569 - Echvi_0619 0.15 -0.2
695,596 + Echvi_0619 0.17 +0.4
695,596 + Echvi_0619 0.17 +0.2
695,603 - Echvi_0619 0.17 +0.6
695,603 - Echvi_0619 0.17 +0.2
695,606 + Echvi_0619 0.18 +0.2
695,636 + Echvi_0619 0.19 -0.9
695,636 + Echvi_0619 0.19 -0.7
695,636 + Echvi_0619 0.19 +0.2
695,637 - Echvi_0619 0.19 -1.0
695,637 - Echvi_0619 0.19 -0.4
695,713 - Echvi_0619 0.23 -1.3
695,713 - Echvi_0619 0.23 -0.8
695,713 - Echvi_0619 0.23 +1.9
695,715 - Echvi_0619 0.24 -0.3
695,776 - +2.9
695,776 - Echvi_0619 0.27 -1.3
695,871 - Echvi_0619 0.32 -0.1
696,020 - Echvi_0619 0.40 -0.7
696,069 - Echvi_0619 0.43 -0.6

Or see this region's nucleotide sequence