Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19830

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19825 and CA264_19830 are separated by 531 nucleotidesCA264_19830 and CA264_19835 are separated by 2 nucleotides CA264_19825: CA264_19825 - Tat (twin-arginine translocation) pathway signal sequence containing protein, at 4,574,637 to 4,575,305 _19825 CA264_19830: CA264_19830 - hypothetical protein, at 4,575,837 to 4,577,285 _19830 CA264_19835: CA264_19835 - chorismate synthase, at 4,577,288 to 4,578,367 _19835 Position (kb) 4575 4576 4577 4578Strain fitness (log2 ratio) -2 -1 0 1at 4574.840 kb on - strand, within CA264_19825at 4574.955 kb on + strand, within CA264_19825at 4574.955 kb on + strand, within CA264_19825at 4574.955 kb on + strand, within CA264_19825at 4575.031 kb on - strand, within CA264_19825at 4575.031 kb on - strand, within CA264_19825at 4575.110 kb on + strand, within CA264_19825at 4575.142 kb on + strand, within CA264_19825at 4575.148 kb on + strand, within CA264_19825at 4575.149 kb on - strand, within CA264_19825at 4575.250 kb on - strandat 4575.354 kb on - strandat 4575.390 kb on + strandat 4575.390 kb on + strandat 4575.468 kb on - strandat 4575.557 kb on + strandat 4575.557 kb on + strandat 4575.557 kb on + strandat 4575.557 kb on + strandat 4575.560 kb on - strandat 4575.561 kb on + strandat 4575.561 kb on + strandat 4575.562 kb on - strandat 4575.567 kb on + strandat 4575.570 kb on - strandat 4575.570 kb on - strandat 4575.600 kb on - strandat 4575.605 kb on - strandat 4575.612 kb on - strandat 4575.797 kb on + strandat 4575.878 kb on - strandat 4575.990 kb on + strand, within CA264_19830at 4575.990 kb on + strand, within CA264_19830at 4575.991 kb on - strand, within CA264_19830at 4575.991 kb on - strand, within CA264_19830at 4576.036 kb on - strand, within CA264_19830at 4576.125 kb on + strand, within CA264_19830at 4576.128 kb on - strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.189 kb on + strand, within CA264_19830at 4576.229 kb on + strand, within CA264_19830at 4576.303 kb on + strand, within CA264_19830at 4576.304 kb on - strand, within CA264_19830at 4576.392 kb on + strand, within CA264_19830at 4576.393 kb on - strand, within CA264_19830at 4576.567 kb on - strand, within CA264_19830at 4576.567 kb on - strand, within CA264_19830at 4576.639 kb on - strand, within CA264_19830at 4576.639 kb on - strand, within CA264_19830at 4576.641 kb on - strand, within CA264_19830at 4576.701 kb on + strand, within CA264_19830at 4576.829 kb on + strand, within CA264_19830at 4576.829 kb on + strand, within CA264_19830at 4576.829 kb on + strand, within CA264_19830at 4576.830 kb on - strand, within CA264_19830at 4576.830 kb on - strand, within CA264_19830at 4576.833 kb on + strand, within CA264_19830at 4577.043 kb on + strand, within CA264_19830at 4577.043 kb on + strand, within CA264_19830at 4577.048 kb on + strand, within CA264_19830at 4577.067 kb on + strand, within CA264_19830at 4577.158 kb on - strandat 4577.158 kb on - strandat 4577.284 kb on - strandat 4577.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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4,574,840 - CA264_19825 0.30 +0.2
4,574,955 + CA264_19825 0.48 +0.3
4,574,955 + CA264_19825 0.48 -0.5
4,574,955 + CA264_19825 0.48 +0.0
4,575,031 - CA264_19825 0.59 -0.1
4,575,031 - CA264_19825 0.59 +0.2
4,575,110 + CA264_19825 0.71 +0.1
4,575,142 + CA264_19825 0.75 +0.1
4,575,148 + CA264_19825 0.76 -0.4
4,575,149 - CA264_19825 0.77 +1.5
4,575,250 - -0.4
4,575,354 - +0.3
4,575,390 + -0.6
4,575,390 + +0.3
4,575,468 - -1.4
4,575,557 + -0.8
4,575,557 + -0.2
4,575,557 + -0.8
4,575,557 + -0.6
4,575,560 - -0.1
4,575,561 + -0.2
4,575,561 + +0.1
4,575,562 - -0.8
4,575,567 + -0.1
4,575,570 - -0.4
4,575,570 - -0.5
4,575,600 - -0.0
4,575,605 - -0.5
4,575,612 - -1.4
4,575,797 + +0.3
4,575,878 - +0.4
4,575,990 + CA264_19830 0.11 -1.3
4,575,990 + CA264_19830 0.11 +1.6
4,575,991 - CA264_19830 0.11 -0.3
4,575,991 - CA264_19830 0.11 -0.4
4,576,036 - CA264_19830 0.14 -0.7
4,576,125 + CA264_19830 0.20 -0.7
4,576,128 - CA264_19830 0.20 -0.2
4,576,189 + CA264_19830 0.24 -1.6
4,576,189 + CA264_19830 0.24 +0.6
4,576,189 + CA264_19830 0.24 +0.3
4,576,189 + CA264_19830 0.24 -0.2
4,576,229 + CA264_19830 0.27 +0.8
4,576,303 + CA264_19830 0.32 +0.2
4,576,304 - CA264_19830 0.32 -1.6
4,576,392 + CA264_19830 0.38 -0.3
4,576,393 - CA264_19830 0.38 -0.7
4,576,567 - CA264_19830 0.50 -0.5
4,576,567 - CA264_19830 0.50 -0.5
4,576,639 - CA264_19830 0.55 -0.6
4,576,639 - CA264_19830 0.55 -0.2
4,576,641 - CA264_19830 0.55 -0.2
4,576,701 + CA264_19830 0.60 -0.9
4,576,829 + CA264_19830 0.68 -0.3
4,576,829 + CA264_19830 0.68 -0.6
4,576,829 + CA264_19830 0.68 -0.7
4,576,830 - CA264_19830 0.69 +0.1
4,576,830 - CA264_19830 0.69 +0.1
4,576,833 + CA264_19830 0.69 -2.5
4,577,043 + CA264_19830 0.83 -0.6
4,577,043 + CA264_19830 0.83 +0.3
4,577,048 + CA264_19830 0.84 +0.1
4,577,067 + CA264_19830 0.85 -0.3
4,577,158 - -0.7
4,577,158 - -1.7
4,577,284 - +0.3
4,577,287 + +0.0

Or see this region's nucleotide sequence