Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18740

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18730 and CA264_18735 are separated by 6 nucleotidesCA264_18735 and CA264_18740 overlap by 8 nucleotidesCA264_18740 and CA264_18745 are separated by 75 nucleotides CA264_18730: CA264_18730 - phosphate ABC transporter ATP-binding protein, at 4,348,465 to 4,349,229 _18730 CA264_18735: CA264_18735 - phosphate ABC transporter, permease protein PstA, at 4,349,236 to 4,350,093 _18735 CA264_18740: CA264_18740 - phosphate ABC transporter permease subunit PstC, at 4,350,086 to 4,350,961 _18740 CA264_18745: CA264_18745 - protein sphX, at 4,351,037 to 4,352,032 _18745 Position (kb) 4350 4351Strain fitness (log2 ratio) -2 -1 0 1at 4349.152 kb on - strand, within CA264_18730at 4349.181 kb on - strandat 4349.232 kb on + strandat 4349.233 kb on - strandat 4349.233 kb on - strandat 4349.233 kb on - strandat 4349.269 kb on + strandat 4349.269 kb on + strandat 4349.273 kb on + strandat 4349.275 kb on + strandat 4349.276 kb on - strandat 4349.314 kb on + strandat 4349.315 kb on - strandat 4349.373 kb on + strand, within CA264_18735at 4349.508 kb on + strand, within CA264_18735at 4349.579 kb on + strand, within CA264_18735at 4349.668 kb on - strand, within CA264_18735at 4349.742 kb on + strand, within CA264_18735at 4349.743 kb on - strand, within CA264_18735at 4349.813 kb on + strand, within CA264_18735at 4349.813 kb on + strand, within CA264_18735at 4349.814 kb on - strand, within CA264_18735at 4349.905 kb on + strand, within CA264_18735at 4349.944 kb on - strand, within CA264_18735at 4350.022 kb on + strandat 4350.023 kb on - strandat 4350.023 kb on - strandat 4350.023 kb on - strandat 4350.024 kb on + strandat 4350.087 kb on + strandat 4350.094 kb on - strandat 4350.163 kb on + strandat 4350.163 kb on + strandat 4350.164 kb on - strandat 4350.164 kb on - strandat 4350.166 kb on + strandat 4350.167 kb on - strandat 4350.224 kb on + strand, within CA264_18740at 4350.225 kb on - strand, within CA264_18740at 4350.238 kb on - strand, within CA264_18740at 4350.347 kb on + strand, within CA264_18740at 4350.350 kb on - strand, within CA264_18740at 4350.506 kb on - strand, within CA264_18740at 4350.650 kb on + strand, within CA264_18740at 4350.650 kb on + strand, within CA264_18740at 4350.679 kb on - strand, within CA264_18740at 4350.690 kb on + strand, within CA264_18740at 4350.772 kb on + strand, within CA264_18740at 4350.859 kb on + strand, within CA264_18740at 4350.883 kb on + strandat 4350.902 kb on + strandat 4350.903 kb on - strandat 4350.911 kb on + strandat 4350.912 kb on - strandat 4350.953 kb on + strandat 4350.970 kb on - strandat 4351.035 kb on + strandat 4351.039 kb on - strandat 4351.105 kb on - strandat 4351.105 kb on - strandat 4351.128 kb on + strandat 4351.167 kb on + strand, within CA264_18745at 4351.222 kb on - strand, within CA264_18745at 4351.222 kb on - strand, within CA264_18745at 4351.222 kb on - strand, within CA264_18745at 4351.266 kb on - strand, within CA264_18745at 4351.266 kb on - strand, within CA264_18745at 4351.472 kb on + strand, within CA264_18745at 4351.473 kb on - strand, within CA264_18745at 4351.486 kb on + strand, within CA264_18745at 4351.491 kb on + strand, within CA264_18745at 4351.498 kb on - strand, within CA264_18745at 4351.658 kb on + strand, within CA264_18745at 4351.659 kb on - strand, within CA264_18745at 4351.659 kb on - strand, within CA264_18745at 4351.664 kb on + strand, within CA264_18745at 4351.686 kb on - strand, within CA264_18745at 4351.702 kb on - strand, within CA264_18745at 4351.769 kb on - strand, within CA264_18745at 4351.786 kb on + strand, within CA264_18745at 4351.796 kb on - strand, within CA264_18745at 4351.857 kb on + strand, within CA264_18745at 4351.858 kb on - strand, within CA264_18745at 4351.858 kb on - strand, within CA264_18745at 4351.883 kb on - strand, within CA264_18745

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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4,349,152 - CA264_18730 0.90 -1.2
4,349,181 - +1.1
4,349,232 + +1.1
4,349,233 - -0.5
4,349,233 - -0.9
4,349,233 - -0.3
4,349,269 + +0.5
4,349,269 + +0.3
4,349,273 + +0.1
4,349,275 + -1.9
4,349,276 - -0.3
4,349,314 + -0.7
4,349,315 - -1.1
4,349,373 + CA264_18735 0.16 +0.6
4,349,508 + CA264_18735 0.32 +0.0
4,349,579 + CA264_18735 0.40 +0.1
4,349,668 - CA264_18735 0.50 -1.7
4,349,742 + CA264_18735 0.59 +0.1
4,349,743 - CA264_18735 0.59 -0.3
4,349,813 + CA264_18735 0.67 +0.6
4,349,813 + CA264_18735 0.67 +0.5
4,349,814 - CA264_18735 0.67 +0.2
4,349,905 + CA264_18735 0.78 -0.8
4,349,944 - CA264_18735 0.83 +0.1
4,350,022 + -0.1
4,350,023 - +0.4
4,350,023 - -0.4
4,350,023 - -0.3
4,350,024 + -0.2
4,350,087 + -0.3
4,350,094 - -0.4
4,350,163 + +0.3
4,350,163 + -0.4
4,350,164 - +0.3
4,350,164 - -0.8
4,350,166 + -0.3
4,350,167 - -1.6
4,350,224 + CA264_18740 0.16 -1.1
4,350,225 - CA264_18740 0.16 -0.8
4,350,238 - CA264_18740 0.17 -0.0
4,350,347 + CA264_18740 0.30 +0.2
4,350,350 - CA264_18740 0.30 -0.2
4,350,506 - CA264_18740 0.48 -0.5
4,350,650 + CA264_18740 0.64 -0.6
4,350,650 + CA264_18740 0.64 -0.2
4,350,679 - CA264_18740 0.68 -1.6
4,350,690 + CA264_18740 0.69 -0.6
4,350,772 + CA264_18740 0.78 +0.8
4,350,859 + CA264_18740 0.88 +0.0
4,350,883 + +1.4
4,350,902 + +0.3
4,350,903 - +1.2
4,350,911 + +0.3
4,350,912 - +0.4
4,350,953 + +0.1
4,350,970 - -1.6
4,351,035 + -0.1
4,351,039 - +0.0
4,351,105 - +0.1
4,351,105 - -0.2
4,351,128 + -0.7
4,351,167 + CA264_18745 0.13 -0.1
4,351,222 - CA264_18745 0.19 -0.6
4,351,222 - CA264_18745 0.19 -0.6
4,351,222 - CA264_18745 0.19 -0.4
4,351,266 - CA264_18745 0.23 -1.2
4,351,266 - CA264_18745 0.23 -0.0
4,351,472 + CA264_18745 0.44 -2.7
4,351,473 - CA264_18745 0.44 -0.2
4,351,486 + CA264_18745 0.45 +0.6
4,351,491 + CA264_18745 0.46 -0.1
4,351,498 - CA264_18745 0.46 -0.7
4,351,658 + CA264_18745 0.62 -1.2
4,351,659 - CA264_18745 0.62 -0.5
4,351,659 - CA264_18745 0.62 +1.4
4,351,664 + CA264_18745 0.63 -0.1
4,351,686 - CA264_18745 0.65 +0.2
4,351,702 - CA264_18745 0.67 -0.1
4,351,769 - CA264_18745 0.73 -0.8
4,351,786 + CA264_18745 0.75 +0.7
4,351,796 - CA264_18745 0.76 +0.6
4,351,857 + CA264_18745 0.82 -1.0
4,351,858 - CA264_18745 0.82 -1.1
4,351,858 - CA264_18745 0.82 -0.2
4,351,883 - CA264_18745 0.85 -0.8

Or see this region's nucleotide sequence