Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17730

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17720 and CA264_17725 are separated by 147 nucleotidesCA264_17725 and CA264_17730 are separated by 20 nucleotidesCA264_17730 and CA264_17735 are separated by 797 nucleotides CA264_17720: CA264_17720 - beta-ketoadipyl CoA thiolase, at 4,122,624 to 4,123,823 _17720 CA264_17725: CA264_17725 - tRNA pseudouridine synthase A, at 4,123,971 to 4,124,723 _17725 CA264_17730: CA264_17730 - methionine gamma-lyase, at 4,124,744 to 4,126,051 _17730 CA264_17735: CA264_17735 - antibiotic ABC transporter ATP-binding protein, at 4,126,849 to 4,128,618 _17735 Position (kb) 4124 4125 4126 4127Strain fitness (log2 ratio) -2 -1 0 1 2at 4123.765 kb on + strandat 4123.804 kb on + strandat 4123.810 kb on - strandat 4123.820 kb on - strandat 4123.821 kb on + strandat 4123.822 kb on - strandat 4123.822 kb on - strandat 4123.822 kb on - strandat 4123.960 kb on - strandat 4123.990 kb on + strandat 4124.071 kb on + strand, within CA264_17725at 4124.075 kb on + strand, within CA264_17725at 4124.080 kb on + strand, within CA264_17725at 4124.080 kb on + strand, within CA264_17725at 4124.124 kb on - strand, within CA264_17725at 4124.192 kb on - strand, within CA264_17725at 4124.244 kb on + strand, within CA264_17725at 4124.245 kb on - strand, within CA264_17725at 4124.301 kb on + strand, within CA264_17725at 4124.337 kb on + strand, within CA264_17725at 4124.340 kb on + strand, within CA264_17725at 4124.341 kb on - strand, within CA264_17725at 4124.397 kb on - strand, within CA264_17725at 4124.397 kb on - strand, within CA264_17725at 4124.397 kb on - strand, within CA264_17725at 4124.405 kb on + strand, within CA264_17725at 4124.406 kb on - strand, within CA264_17725at 4124.543 kb on + strand, within CA264_17725at 4124.544 kb on - strand, within CA264_17725at 4124.634 kb on - strand, within CA264_17725at 4124.671 kb on + strandat 4124.672 kb on - strandat 4124.673 kb on + strandat 4124.674 kb on - strandat 4124.702 kb on + strandat 4124.702 kb on + strandat 4124.703 kb on - strandat 4124.708 kb on - strandat 4124.734 kb on - strandat 4124.739 kb on + strandat 4124.740 kb on - strandat 4124.740 kb on - strandat 4124.740 kb on - strandat 4124.740 kb on - strandat 4124.743 kb on + strandat 4124.744 kb on - strandat 4124.751 kb on + strandat 4124.751 kb on + strandat 4124.778 kb on + strandat 4124.786 kb on - strandat 4124.808 kb on + strandat 4124.863 kb on + strandat 4124.863 kb on + strandat 4124.864 kb on - strandat 4124.864 kb on - strandat 4124.867 kb on + strandat 4124.930 kb on + strand, within CA264_17730at 4124.964 kb on + strand, within CA264_17730at 4124.964 kb on + strand, within CA264_17730at 4124.964 kb on + strand, within CA264_17730at 4124.965 kb on - strand, within CA264_17730at 4125.006 kb on + strand, within CA264_17730at 4125.118 kb on + strand, within CA264_17730at 4125.136 kb on + strand, within CA264_17730at 4125.136 kb on + strand, within CA264_17730at 4125.137 kb on - strand, within CA264_17730at 4125.140 kb on + strand, within CA264_17730at 4125.140 kb on + strand, within CA264_17730at 4125.141 kb on - strand, within CA264_17730at 4125.158 kb on + strand, within CA264_17730at 4125.159 kb on - strand, within CA264_17730at 4125.159 kb on - strand, within CA264_17730at 4125.170 kb on - strand, within CA264_17730at 4125.179 kb on - strand, within CA264_17730at 4125.187 kb on + strand, within CA264_17730at 4125.196 kb on + strand, within CA264_17730at 4125.232 kb on - strand, within CA264_17730at 4125.279 kb on + strand, within CA264_17730at 4125.280 kb on - strand, within CA264_17730at 4125.280 kb on - strand, within CA264_17730at 4125.281 kb on + strand, within CA264_17730at 4125.281 kb on + strand, within CA264_17730at 4125.282 kb on - strand, within CA264_17730at 4125.282 kb on - strand, within CA264_17730at 4125.337 kb on - strand, within CA264_17730at 4125.378 kb on + strand, within CA264_17730at 4125.378 kb on + strand, within CA264_17730at 4125.379 kb on - strand, within CA264_17730at 4125.391 kb on + strand, within CA264_17730at 4125.391 kb on + strand, within CA264_17730at 4125.391 kb on + strand, within CA264_17730at 4125.394 kb on + strand, within CA264_17730at 4125.395 kb on - strand, within CA264_17730at 4125.450 kb on + strand, within CA264_17730at 4125.451 kb on - strand, within CA264_17730at 4125.452 kb on + strand, within CA264_17730at 4125.452 kb on + strand, within CA264_17730at 4125.468 kb on - strand, within CA264_17730at 4125.695 kb on + strand, within CA264_17730at 4125.696 kb on - strand, within CA264_17730at 4125.698 kb on + strand, within CA264_17730at 4125.699 kb on - strand, within CA264_17730at 4125.736 kb on + strand, within CA264_17730at 4125.849 kb on + strand, within CA264_17730at 4125.949 kb on + strandat 4125.949 kb on + strandat 4125.950 kb on - strandat 4125.950 kb on - strandat 4125.950 kb on - strandat 4125.955 kb on - strandat 4125.972 kb on + strandat 4125.973 kb on - strandat 4126.001 kb on - strandat 4126.054 kb on + strandat 4126.055 kb on - strandat 4126.055 kb on - strandat 4126.056 kb on + strandat 4126.057 kb on - strandat 4126.060 kb on + strandat 4126.070 kb on + strandat 4126.071 kb on - strandat 4126.086 kb on - strandat 4126.089 kb on + strandat 4126.089 kb on + strandat 4126.089 kb on + strandat 4126.089 kb on + strandat 4126.090 kb on - strandat 4126.090 kb on - strandat 4126.090 kb on - strandat 4126.119 kb on + strandat 4126.120 kb on - strandat 4126.150 kb on + strandat 4126.150 kb on + strandat 4126.151 kb on - strandat 4126.179 kb on + strandat 4126.179 kb on + strandat 4126.182 kb on - strandat 4126.182 kb on - strandat 4126.194 kb on + strandat 4126.242 kb on - strandat 4126.427 kb on - strandat 4126.431 kb on - strandat 4126.493 kb on + strandat 4126.494 kb on - strandat 4126.494 kb on - strandat 4126.619 kb on + strandat 4126.619 kb on + strandat 4126.619 kb on + strandat 4126.620 kb on - strandat 4126.623 kb on + strandat 4126.678 kb on + strandat 4126.678 kb on + strandat 4126.679 kb on - strandat 4126.682 kb on - strandat 4126.709 kb on + strandat 4126.709 kb on + strandat 4126.709 kb on + strandat 4126.710 kb on - strandat 4126.710 kb on - strandat 4126.758 kb on + strandat 4126.765 kb on - strandat 4126.780 kb on + strandat 4126.780 kb on + strandat 4126.781 kb on - strandat 4126.791 kb on - strandat 4126.820 kb on + strandat 4126.820 kb on + strandat 4126.821 kb on - strandat 4126.833 kb on + strandat 4126.864 kb on - strandat 4126.869 kb on + strandat 4126.876 kb on - strandat 4126.880 kb on + strandat 4126.928 kb on - strandat 4127.009 kb on - strandat 4127.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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4,123,765 + -0.9
4,123,804 + -0.0
4,123,810 - +0.8
4,123,820 - -0.3
4,123,821 + -1.1
4,123,822 - +1.2
4,123,822 - -0.2
4,123,822 - -0.3
4,123,960 - -0.4
4,123,990 + +0.1
4,124,071 + CA264_17725 0.13 -1.6
4,124,075 + CA264_17725 0.14 -0.4
4,124,080 + CA264_17725 0.14 -0.6
4,124,080 + CA264_17725 0.14 -2.1
4,124,124 - CA264_17725 0.20 -0.3
4,124,192 - CA264_17725 0.29 -0.8
4,124,244 + CA264_17725 0.36 -0.8
4,124,245 - CA264_17725 0.36 -2.2
4,124,301 + CA264_17725 0.44 -1.1
4,124,337 + CA264_17725 0.49 -0.8
4,124,340 + CA264_17725 0.49 -1.2
4,124,341 - CA264_17725 0.49 -0.7
4,124,397 - CA264_17725 0.57 -0.0
4,124,397 - CA264_17725 0.57 -0.5
4,124,397 - CA264_17725 0.57 -0.9
4,124,405 + CA264_17725 0.58 -1.7
4,124,406 - CA264_17725 0.58 -1.3
4,124,543 + CA264_17725 0.76 +0.1
4,124,544 - CA264_17725 0.76 -0.2
4,124,634 - CA264_17725 0.88 +0.1
4,124,671 + -0.1
4,124,672 - +0.5
4,124,673 + -0.5
4,124,674 - +0.4
4,124,702 + -0.4
4,124,702 + -0.2
4,124,703 - -1.2
4,124,708 - +0.1
4,124,734 - +0.3
4,124,739 + -0.2
4,124,740 - +0.7
4,124,740 - +0.9
4,124,740 - -0.2
4,124,740 - +2.7
4,124,743 + +0.8
4,124,744 - -0.0
4,124,751 + -0.4
4,124,751 + +0.3
4,124,778 + -1.1
4,124,786 - -0.2
4,124,808 + -0.1
4,124,863 + -0.1
4,124,863 + +0.2
4,124,864 - +0.1
4,124,864 - -0.0
4,124,867 + -0.0
4,124,930 + CA264_17730 0.14 +1.3
4,124,964 + CA264_17730 0.17 +0.4
4,124,964 + CA264_17730 0.17 -0.3
4,124,964 + CA264_17730 0.17 -0.1
4,124,965 - CA264_17730 0.17 -0.2
4,125,006 + CA264_17730 0.20 +0.0
4,125,118 + CA264_17730 0.29 +0.3
4,125,136 + CA264_17730 0.30 +0.7
4,125,136 + CA264_17730 0.30 +0.3
4,125,137 - CA264_17730 0.30 -0.9
4,125,140 + CA264_17730 0.30 -0.5
4,125,140 + CA264_17730 0.30 +0.3
4,125,141 - CA264_17730 0.30 -0.7
4,125,158 + CA264_17730 0.32 +0.4
4,125,159 - CA264_17730 0.32 +0.0
4,125,159 - CA264_17730 0.32 +0.2
4,125,170 - CA264_17730 0.33 +1.0
4,125,179 - CA264_17730 0.33 +0.1
4,125,187 + CA264_17730 0.34 -0.1
4,125,196 + CA264_17730 0.35 -0.0
4,125,232 - CA264_17730 0.37 +0.3
4,125,279 + CA264_17730 0.41 -1.0
4,125,280 - CA264_17730 0.41 -0.3
4,125,280 - CA264_17730 0.41 -0.2
4,125,281 + CA264_17730 0.41 -0.0
4,125,281 + CA264_17730 0.41 -0.4
4,125,282 - CA264_17730 0.41 +1.2
4,125,282 - CA264_17730 0.41 -0.2
4,125,337 - CA264_17730 0.45 +0.2
4,125,378 + CA264_17730 0.48 +0.7
4,125,378 + CA264_17730 0.48 -0.3
4,125,379 - CA264_17730 0.49 -0.9
4,125,391 + CA264_17730 0.49 +1.1
4,125,391 + CA264_17730 0.49 +0.2
4,125,391 + CA264_17730 0.49 -0.9
4,125,394 + CA264_17730 0.50 -2.5
4,125,395 - CA264_17730 0.50 +0.7
4,125,450 + CA264_17730 0.54 -0.5
4,125,451 - CA264_17730 0.54 +0.1
4,125,452 + CA264_17730 0.54 -0.1
4,125,452 + CA264_17730 0.54 +0.4
4,125,468 - CA264_17730 0.55 -0.4
4,125,695 + CA264_17730 0.73 -0.5
4,125,696 - CA264_17730 0.73 -1.1
4,125,698 + CA264_17730 0.73 -0.6
4,125,699 - CA264_17730 0.73 +0.8
4,125,736 + CA264_17730 0.76 +0.5
4,125,849 + CA264_17730 0.84 -0.6
4,125,949 + -0.3
4,125,949 + -1.0
4,125,950 - -0.7
4,125,950 - -0.4
4,125,950 - -0.5
4,125,955 - +0.3
4,125,972 + -0.4
4,125,973 - -0.1
4,126,001 - +1.0
4,126,054 + -0.5
4,126,055 - -0.2
4,126,055 - -0.0
4,126,056 + -2.6
4,126,057 - +0.3
4,126,060 + +0.3
4,126,070 + +0.0
4,126,071 - -0.2
4,126,086 - +0.1
4,126,089 + -0.6
4,126,089 + -0.0
4,126,089 + -1.5
4,126,089 + +0.3
4,126,090 - -0.2
4,126,090 - +0.0
4,126,090 - +0.5
4,126,119 + -0.6
4,126,120 - -0.0
4,126,150 + +0.0
4,126,150 + +0.0
4,126,151 - -0.7
4,126,179 + -1.1
4,126,179 + +0.8
4,126,182 - -0.1
4,126,182 - -0.8
4,126,194 + -0.3
4,126,242 - -1.4
4,126,427 - +0.3
4,126,431 - +0.7
4,126,493 + -0.2
4,126,494 - -0.9
4,126,494 - -0.9
4,126,619 + +0.1
4,126,619 + -0.1
4,126,619 + +0.7
4,126,620 - -0.5
4,126,623 + -0.2
4,126,678 + +0.4
4,126,678 + -0.4
4,126,679 - -1.4
4,126,682 - -0.1
4,126,709 + +0.0
4,126,709 + -0.1
4,126,709 + +0.5
4,126,710 - +0.1
4,126,710 - -1.4
4,126,758 + -0.6
4,126,765 - +0.9
4,126,780 + +0.5
4,126,780 + -0.5
4,126,781 - -0.4
4,126,791 - -1.0
4,126,820 + -0.6
4,126,820 + -0.1
4,126,821 - -0.9
4,126,833 + -0.2
4,126,864 - -0.1
4,126,869 + +0.4
4,126,876 - +0.1
4,126,880 + +0.2
4,126,928 - +0.9
4,127,009 - +0.8
4,127,015 + +1.0

Or see this region's nucleotide sequence