Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17720

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17710 and CA264_17715 are separated by 242 nucleotidesCA264_17715 and CA264_17720 are separated by 66 nucleotidesCA264_17720 and CA264_17725 are separated by 147 nucleotidesCA264_17725 and CA264_17730 are separated by 20 nucleotides CA264_17710: CA264_17710 - hypothetical protein, at 4,121,077 to 4,121,814 _17710 CA264_17715: CA264_17715 - hypothetical protein, at 4,122,057 to 4,122,557 _17715 CA264_17720: CA264_17720 - beta-ketoadipyl CoA thiolase, at 4,122,624 to 4,123,823 _17720 CA264_17725: CA264_17725 - tRNA pseudouridine synthase A, at 4,123,971 to 4,124,723 _17725 CA264_17730: CA264_17730 - methionine gamma-lyase, at 4,124,744 to 4,126,051 _17730 Position (kb) 4122 4123 4124Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4121.704 kb on + strand, within CA264_17710at 4121.704 kb on + strand, within CA264_17710at 4121.705 kb on - strand, within CA264_17710at 4121.710 kb on + strand, within CA264_17710at 4121.711 kb on - strand, within CA264_17710at 4121.716 kb on + strand, within CA264_17710at 4121.716 kb on + strand, within CA264_17710at 4121.717 kb on - strand, within CA264_17710at 4121.744 kb on - strandat 4121.744 kb on - strandat 4121.750 kb on - strandat 4121.883 kb on + strandat 4121.888 kb on + strandat 4121.981 kb on - strandat 4122.021 kb on + strandat 4122.552 kb on + strandat 4122.557 kb on + strandat 4122.557 kb on + strandat 4122.557 kb on + strandat 4122.558 kb on - strandat 4122.558 kb on - strandat 4122.572 kb on - strandat 4122.582 kb on - strandat 4122.595 kb on - strandat 4122.629 kb on + strandat 4122.629 kb on + strandat 4122.629 kb on + strandat 4122.636 kb on + strandat 4122.636 kb on + strandat 4122.636 kb on + strandat 4122.637 kb on - strandat 4122.639 kb on - strandat 4122.639 kb on - strandat 4122.640 kb on + strandat 4122.640 kb on + strandat 4122.641 kb on - strandat 4122.641 kb on - strandat 4122.648 kb on - strandat 4122.649 kb on + strandat 4122.649 kb on + strandat 4122.650 kb on - strandat 4122.653 kb on + strandat 4122.653 kb on + strandat 4122.653 kb on + strandat 4122.654 kb on - strandat 4122.654 kb on - strandat 4122.823 kb on + strand, within CA264_17720at 4122.824 kb on - strand, within CA264_17720at 4122.875 kb on + strand, within CA264_17720at 4122.911 kb on + strand, within CA264_17720at 4122.911 kb on + strand, within CA264_17720at 4122.932 kb on + strand, within CA264_17720at 4122.955 kb on + strand, within CA264_17720at 4122.956 kb on - strand, within CA264_17720at 4122.957 kb on + strand, within CA264_17720at 4122.981 kb on - strand, within CA264_17720at 4123.023 kb on + strand, within CA264_17720at 4123.045 kb on - strand, within CA264_17720at 4123.071 kb on - strand, within CA264_17720at 4123.080 kb on - strand, within CA264_17720at 4123.089 kb on - strand, within CA264_17720at 4123.182 kb on - strand, within CA264_17720at 4123.182 kb on - strand, within CA264_17720at 4123.182 kb on - strand, within CA264_17720at 4123.193 kb on - strand, within CA264_17720at 4123.197 kb on + strand, within CA264_17720at 4123.197 kb on + strand, within CA264_17720at 4123.388 kb on - strand, within CA264_17720at 4123.443 kb on - strand, within CA264_17720at 4123.443 kb on - strand, within CA264_17720at 4123.490 kb on - strand, within CA264_17720at 4123.555 kb on + strand, within CA264_17720at 4123.556 kb on - strand, within CA264_17720at 4123.585 kb on + strand, within CA264_17720at 4123.612 kb on + strand, within CA264_17720at 4123.658 kb on - strand, within CA264_17720at 4123.658 kb on - strand, within CA264_17720at 4123.658 kb on - strand, within CA264_17720at 4123.670 kb on + strand, within CA264_17720at 4123.670 kb on + strand, within CA264_17720at 4123.704 kb on - strandat 4123.765 kb on + strandat 4123.804 kb on + strandat 4123.810 kb on - strandat 4123.820 kb on - strandat 4123.821 kb on + strandat 4123.822 kb on - strandat 4123.822 kb on - strandat 4123.822 kb on - strandat 4123.960 kb on - strandat 4123.990 kb on + strandat 4124.071 kb on + strand, within CA264_17725at 4124.075 kb on + strand, within CA264_17725at 4124.080 kb on + strand, within CA264_17725at 4124.080 kb on + strand, within CA264_17725at 4124.124 kb on - strand, within CA264_17725at 4124.192 kb on - strand, within CA264_17725at 4124.244 kb on + strand, within CA264_17725at 4124.245 kb on - strand, within CA264_17725at 4124.301 kb on + strand, within CA264_17725at 4124.337 kb on + strand, within CA264_17725at 4124.340 kb on + strand, within CA264_17725at 4124.341 kb on - strand, within CA264_17725at 4124.397 kb on - strand, within CA264_17725at 4124.397 kb on - strand, within CA264_17725at 4124.397 kb on - strand, within CA264_17725at 4124.405 kb on + strand, within CA264_17725at 4124.406 kb on - strand, within CA264_17725at 4124.543 kb on + strand, within CA264_17725at 4124.544 kb on - strand, within CA264_17725at 4124.634 kb on - strand, within CA264_17725at 4124.671 kb on + strandat 4124.672 kb on - strandat 4124.673 kb on + strandat 4124.674 kb on - strandat 4124.702 kb on + strandat 4124.702 kb on + strandat 4124.703 kb on - strandat 4124.708 kb on - strandat 4124.734 kb on - strandat 4124.739 kb on + strandat 4124.740 kb on - strandat 4124.740 kb on - strandat 4124.740 kb on - strandat 4124.740 kb on - strandat 4124.743 kb on + strandat 4124.744 kb on - strandat 4124.751 kb on + strandat 4124.751 kb on + strandat 4124.778 kb on + strandat 4124.786 kb on - strandat 4124.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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4,121,704 + CA264_17710 0.85 +0.1
4,121,704 + CA264_17710 0.85 +0.1
4,121,705 - CA264_17710 0.85 -0.2
4,121,710 + CA264_17710 0.86 +0.6
4,121,711 - CA264_17710 0.86 +0.8
4,121,716 + CA264_17710 0.87 -0.7
4,121,716 + CA264_17710 0.87 +0.4
4,121,717 - CA264_17710 0.87 +1.6
4,121,744 - -0.3
4,121,744 - -0.5
4,121,750 - -1.1
4,121,883 + +1.4
4,121,888 + -0.6
4,121,981 - +2.2
4,122,021 + -0.4
4,122,552 + -1.9
4,122,557 + +0.1
4,122,557 + -0.5
4,122,557 + -0.4
4,122,558 - +0.2
4,122,558 - +0.3
4,122,572 - -0.4
4,122,582 - -1.1
4,122,595 - -0.0
4,122,629 + -0.0
4,122,629 + +0.0
4,122,629 + +0.7
4,122,636 + -1.1
4,122,636 + +0.0
4,122,636 + +0.5
4,122,637 - +0.1
4,122,639 - -0.3
4,122,639 - +0.5
4,122,640 + +2.9
4,122,640 + +0.3
4,122,641 - -1.7
4,122,641 - -0.2
4,122,648 - -0.4
4,122,649 + +0.1
4,122,649 + +0.9
4,122,650 - -0.8
4,122,653 + -0.1
4,122,653 + +0.5
4,122,653 + -0.0
4,122,654 - -1.5
4,122,654 - -0.3
4,122,823 + CA264_17720 0.17 -0.8
4,122,824 - CA264_17720 0.17 -0.3
4,122,875 + CA264_17720 0.21 -0.9
4,122,911 + CA264_17720 0.24 +0.1
4,122,911 + CA264_17720 0.24 -0.6
4,122,932 + CA264_17720 0.26 +0.7
4,122,955 + CA264_17720 0.28 -0.4
4,122,956 - CA264_17720 0.28 +0.3
4,122,957 + CA264_17720 0.28 -0.6
4,122,981 - CA264_17720 0.30 -1.4
4,123,023 + CA264_17720 0.33 -0.1
4,123,045 - CA264_17720 0.35 -0.1
4,123,071 - CA264_17720 0.37 +0.0
4,123,080 - CA264_17720 0.38 -0.2
4,123,089 - CA264_17720 0.39 +0.4
4,123,182 - CA264_17720 0.47 +1.0
4,123,182 - CA264_17720 0.47 +1.1
4,123,182 - CA264_17720 0.47 +2.3
4,123,193 - CA264_17720 0.47 +0.0
4,123,197 + CA264_17720 0.48 -0.2
4,123,197 + CA264_17720 0.48 -0.3
4,123,388 - CA264_17720 0.64 -0.1
4,123,443 - CA264_17720 0.68 +0.3
4,123,443 - CA264_17720 0.68 +0.4
4,123,490 - CA264_17720 0.72 +1.2
4,123,555 + CA264_17720 0.78 -0.3
4,123,556 - CA264_17720 0.78 +0.4
4,123,585 + CA264_17720 0.80 +0.2
4,123,612 + CA264_17720 0.82 +1.1
4,123,658 - CA264_17720 0.86 +0.3
4,123,658 - CA264_17720 0.86 -0.4
4,123,658 - CA264_17720 0.86 +1.3
4,123,670 + CA264_17720 0.87 -0.4
4,123,670 + CA264_17720 0.87 -0.6
4,123,704 - -0.5
4,123,765 + -0.9
4,123,804 + -0.0
4,123,810 - +0.8
4,123,820 - -0.3
4,123,821 + -1.1
4,123,822 - +1.2
4,123,822 - -0.2
4,123,822 - -0.3
4,123,960 - -0.4
4,123,990 + +0.1
4,124,071 + CA264_17725 0.13 -1.6
4,124,075 + CA264_17725 0.14 -0.4
4,124,080 + CA264_17725 0.14 -0.6
4,124,080 + CA264_17725 0.14 -2.1
4,124,124 - CA264_17725 0.20 -0.3
4,124,192 - CA264_17725 0.29 -0.8
4,124,244 + CA264_17725 0.36 -0.8
4,124,245 - CA264_17725 0.36 -2.2
4,124,301 + CA264_17725 0.44 -1.1
4,124,337 + CA264_17725 0.49 -0.8
4,124,340 + CA264_17725 0.49 -1.2
4,124,341 - CA264_17725 0.49 -0.7
4,124,397 - CA264_17725 0.57 -0.0
4,124,397 - CA264_17725 0.57 -0.5
4,124,397 - CA264_17725 0.57 -0.9
4,124,405 + CA264_17725 0.58 -1.7
4,124,406 - CA264_17725 0.58 -1.3
4,124,543 + CA264_17725 0.76 +0.1
4,124,544 - CA264_17725 0.76 -0.2
4,124,634 - CA264_17725 0.88 +0.1
4,124,671 + -0.1
4,124,672 - +0.5
4,124,673 + -0.5
4,124,674 - +0.4
4,124,702 + -0.4
4,124,702 + -0.2
4,124,703 - -1.2
4,124,708 - +0.1
4,124,734 - +0.3
4,124,739 + -0.2
4,124,740 - +0.7
4,124,740 - +0.9
4,124,740 - -0.2
4,124,740 - +2.7
4,124,743 + +0.8
4,124,744 - -0.0
4,124,751 + -0.4
4,124,751 + +0.3
4,124,778 + -1.1
4,124,786 - -0.2
4,124,808 + -0.1

Or see this region's nucleotide sequence