Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16525

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16520 and CA264_16525 are separated by 193 nucleotidesCA264_16525 and CA264_16530 are separated by 37 nucleotidesCA264_16530 and CA264_16535 are separated by 287 nucleotides CA264_16520: CA264_16520 - DNA-binding response regulator, at 3,839,350 to 3,840,720 _16520 CA264_16525: CA264_16525 - hypothetical protein, at 3,840,914 to 3,841,246 _16525 CA264_16530: CA264_16530 - hypothetical protein, at 3,841,284 to 3,841,667 _16530 CA264_16535: CA264_16535 - DNA polymerase I, at 3,841,955 to 3,844,801 _16535 Position (kb) 3840 3841 3842Strain fitness (log2 ratio) -2 -1 0 1 2at 3840.181 kb on + strand, within CA264_16520at 3840.182 kb on - strand, within CA264_16520at 3840.197 kb on + strand, within CA264_16520at 3840.198 kb on - strand, within CA264_16520at 3840.198 kb on - strand, within CA264_16520at 3840.227 kb on - strand, within CA264_16520at 3840.227 kb on - strand, within CA264_16520at 3840.229 kb on - strand, within CA264_16520at 3840.229 kb on - strand, within CA264_16520at 3840.239 kb on - strand, within CA264_16520at 3840.239 kb on - strand, within CA264_16520at 3840.265 kb on - strand, within CA264_16520at 3840.274 kb on + strand, within CA264_16520at 3840.333 kb on + strand, within CA264_16520at 3840.334 kb on - strand, within CA264_16520at 3840.411 kb on + strand, within CA264_16520at 3840.411 kb on + strand, within CA264_16520at 3840.411 kb on + strand, within CA264_16520at 3840.411 kb on + strand, within CA264_16520at 3840.412 kb on - strand, within CA264_16520at 3840.412 kb on - strand, within CA264_16520at 3840.420 kb on + strand, within CA264_16520at 3840.421 kb on - strand, within CA264_16520at 3840.421 kb on - strand, within CA264_16520at 3840.476 kb on + strand, within CA264_16520at 3840.626 kb on + strandat 3840.627 kb on - strandat 3840.637 kb on + strandat 3840.637 kb on + strandat 3840.638 kb on - strandat 3840.723 kb on + strandat 3840.723 kb on + strandat 3840.723 kb on + strandat 3840.724 kb on - strandat 3840.724 kb on - strandat 3840.724 kb on - strandat 3840.725 kb on + strandat 3840.725 kb on + strandat 3840.725 kb on + strandat 3840.730 kb on + strandat 3840.791 kb on + strandat 3840.791 kb on + strandat 3840.792 kb on - strandat 3840.812 kb on + strandat 3840.812 kb on + strandat 3840.812 kb on + strandat 3840.813 kb on - strandat 3840.814 kb on + strandat 3840.820 kb on + strandat 3840.822 kb on + strandat 3840.822 kb on + strandat 3840.827 kb on - strandat 3840.831 kb on + strandat 3840.831 kb on + strandat 3840.831 kb on + strandat 3840.831 kb on + strandat 3840.831 kb on + strandat 3840.832 kb on - strandat 3840.832 kb on - strandat 3840.833 kb on + strandat 3840.833 kb on + strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.834 kb on - strandat 3840.836 kb on + strandat 3840.837 kb on - strandat 3840.837 kb on - strandat 3840.842 kb on + strandat 3840.843 kb on - strandat 3840.843 kb on - strandat 3840.843 kb on - strandat 3840.863 kb on + strandat 3840.865 kb on + strandat 3840.865 kb on + strandat 3840.867 kb on + strandat 3840.868 kb on - strandat 3840.893 kb on + strandat 3840.916 kb on - strandat 3840.924 kb on - strandat 3840.945 kb on + strandat 3840.993 kb on + strand, within CA264_16525at 3841.032 kb on + strand, within CA264_16525at 3841.032 kb on + strand, within CA264_16525at 3841.033 kb on - strand, within CA264_16525at 3841.035 kb on - strand, within CA264_16525at 3841.035 kb on - strand, within CA264_16525at 3841.059 kb on + strand, within CA264_16525at 3841.174 kb on + strand, within CA264_16525at 3841.174 kb on + strand, within CA264_16525at 3841.226 kb on + strandat 3841.229 kb on + strandat 3841.229 kb on + strandat 3841.229 kb on + strandat 3841.229 kb on + strandat 3841.271 kb on - strandat 3841.281 kb on + strandat 3841.282 kb on - strandat 3841.282 kb on - strandat 3841.282 kb on - strandat 3841.282 kb on - strandat 3841.373 kb on + strand, within CA264_16530at 3841.373 kb on + strand, within CA264_16530at 3841.374 kb on - strand, within CA264_16530at 3841.383 kb on + strand, within CA264_16530at 3841.383 kb on + strand, within CA264_16530at 3841.383 kb on + strand, within CA264_16530at 3841.384 kb on - strand, within CA264_16530at 3841.391 kb on - strand, within CA264_16530at 3841.441 kb on - strand, within CA264_16530at 3841.441 kb on - strand, within CA264_16530at 3841.441 kb on - strand, within CA264_16530at 3841.651 kb on - strandat 3841.657 kb on - strandat 3841.657 kb on - strandat 3841.767 kb on - strandat 3841.769 kb on - strandat 3841.783 kb on + strandat 3841.888 kb on - strandat 3841.888 kb on - strandat 3841.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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3,840,181 + CA264_16520 0.61 -0.5
3,840,182 - CA264_16520 0.61 +0.4
3,840,197 + CA264_16520 0.62 -0.2
3,840,198 - CA264_16520 0.62 +0.0
3,840,198 - CA264_16520 0.62 +0.5
3,840,227 - CA264_16520 0.64 -0.7
3,840,227 - CA264_16520 0.64 -0.1
3,840,229 - CA264_16520 0.64 +1.6
3,840,229 - CA264_16520 0.64 -0.5
3,840,239 - CA264_16520 0.65 -0.3
3,840,239 - CA264_16520 0.65 -1.1
3,840,265 - CA264_16520 0.67 -0.6
3,840,274 + CA264_16520 0.67 +0.1
3,840,333 + CA264_16520 0.72 -0.3
3,840,334 - CA264_16520 0.72 +0.5
3,840,411 + CA264_16520 0.77 +0.0
3,840,411 + CA264_16520 0.77 +0.2
3,840,411 + CA264_16520 0.77 -0.9
3,840,411 + CA264_16520 0.77 -0.2
3,840,412 - CA264_16520 0.77 -1.2
3,840,412 - CA264_16520 0.77 -0.2
3,840,420 + CA264_16520 0.78 -0.1
3,840,421 - CA264_16520 0.78 -1.3
3,840,421 - CA264_16520 0.78 -1.2
3,840,476 + CA264_16520 0.82 -0.3
3,840,626 + +0.6
3,840,627 - +1.6
3,840,637 + -0.7
3,840,637 + +1.1
3,840,638 - -0.2
3,840,723 + -0.3
3,840,723 + +0.6
3,840,723 + +2.6
3,840,724 - +0.5
3,840,724 - +0.2
3,840,724 - -0.5
3,840,725 + +0.1
3,840,725 + -1.2
3,840,725 + -0.1
3,840,730 + -0.4
3,840,791 + +0.7
3,840,791 + -0.1
3,840,792 - +0.3
3,840,812 + +1.6
3,840,812 + +0.0
3,840,812 + -0.1
3,840,813 - -0.2
3,840,814 + +0.6
3,840,820 + +1.2
3,840,822 + -0.2
3,840,822 + +0.3
3,840,827 - -0.2
3,840,831 + -0.2
3,840,831 + +0.2
3,840,831 + -0.7
3,840,831 + -0.3
3,840,831 + +0.1
3,840,832 - -0.8
3,840,832 - +0.3
3,840,833 + +0.2
3,840,833 + -0.4
3,840,834 - +0.7
3,840,834 - +0.7
3,840,834 - +0.1
3,840,834 - +0.0
3,840,834 - +0.3
3,840,834 - -0.5
3,840,834 - +0.3
3,840,834 - -0.1
3,840,834 - +0.3
3,840,836 + -0.2
3,840,837 - -0.1
3,840,837 - +1.3
3,840,842 + +1.4
3,840,843 - -0.9
3,840,843 - -0.6
3,840,843 - +0.2
3,840,863 + -0.5
3,840,865 + -0.1
3,840,865 + +0.8
3,840,867 + +1.0
3,840,868 - -0.5
3,840,893 + +0.5
3,840,916 - -0.8
3,840,924 - -0.2
3,840,945 + +0.6
3,840,993 + CA264_16525 0.24 -0.6
3,841,032 + CA264_16525 0.35 -0.9
3,841,032 + CA264_16525 0.35 -1.6
3,841,033 - CA264_16525 0.36 -0.8
3,841,035 - CA264_16525 0.36 -1.9
3,841,035 - CA264_16525 0.36 -0.9
3,841,059 + CA264_16525 0.44 -0.8
3,841,174 + CA264_16525 0.78 +1.1
3,841,174 + CA264_16525 0.78 -0.4
3,841,226 + +0.2
3,841,229 + -0.9
3,841,229 + -0.1
3,841,229 + +1.4
3,841,229 + -0.5
3,841,271 - -0.5
3,841,281 + -0.4
3,841,282 - -1.1
3,841,282 - -1.7
3,841,282 - -0.4
3,841,282 - -0.1
3,841,373 + CA264_16530 0.23 +1.5
3,841,373 + CA264_16530 0.23 -0.2
3,841,374 - CA264_16530 0.23 -0.6
3,841,383 + CA264_16530 0.26 -0.6
3,841,383 + CA264_16530 0.26 -1.0
3,841,383 + CA264_16530 0.26 -0.5
3,841,384 - CA264_16530 0.26 -0.2
3,841,391 - CA264_16530 0.28 +0.4
3,841,441 - CA264_16530 0.41 -0.3
3,841,441 - CA264_16530 0.41 -0.3
3,841,441 - CA264_16530 0.41 +0.1
3,841,651 - -0.5
3,841,657 - -1.3
3,841,657 - -0.4
3,841,767 - -0.5
3,841,769 - +0.2
3,841,783 + -0.6
3,841,888 - -0.2
3,841,888 - +0.5
3,841,893 - -0.7

Or see this region's nucleotide sequence