Experiment: m.b. Paraquat dichloride 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15200 and CA264_15205 are separated by 104 nucleotides CA264_15205 and CA264_15210 are separated by 76 nucleotides CA264_15210 and CA264_15215 are separated by 29 nucleotides
CA264_15200: CA264_15200 - hypothetical protein, at 3,560,550 to 3,562,193
_15200
CA264_15205: CA264_15205 - RNA pseudouridine synthase, at 3,562,298 to 3,563,332
_15205
CA264_15210: CA264_15210 - outer membrane chaperone Skp, at 3,563,409 to 3,564,017
_15210
CA264_15215: CA264_15215 - hypothetical protein, at 3,564,047 to 3,564,712
_15215
Position (kb)
3562
3563
3564 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3561.323 kb on - strand, within CA264_15200 at 3561.565 kb on - strand, within CA264_15200 at 3561.699 kb on - strand, within CA264_15200 at 3561.717 kb on - strand, within CA264_15200 at 3561.735 kb on - strand, within CA264_15200 at 3561.769 kb on - strand, within CA264_15200 at 3561.769 kb on - strand, within CA264_15200 at 3561.771 kb on + strand, within CA264_15200 at 3561.774 kb on + strand, within CA264_15200 at 3561.782 kb on + strand, within CA264_15200 at 3561.789 kb on + strand, within CA264_15200 at 3561.789 kb on + strand, within CA264_15200 at 3561.790 kb on - strand, within CA264_15200 at 3561.791 kb on + strand, within CA264_15200 at 3561.792 kb on - strand, within CA264_15200 at 3561.871 kb on - strand, within CA264_15200 at 3561.901 kb on - strand, within CA264_15200 at 3561.907 kb on - strand, within CA264_15200 at 3561.979 kb on - strand, within CA264_15200 at 3561.982 kb on - strand, within CA264_15200 at 3562.063 kb on - strand at 3562.066 kb on - strand at 3562.066 kb on - strand at 3562.072 kb on - strand at 3562.209 kb on - strand at 3562.209 kb on - strand at 3562.213 kb on + strand at 3562.316 kb on + strand at 3562.470 kb on + strand, within CA264_15205 at 3562.512 kb on + strand, within CA264_15205 at 3562.513 kb on - strand, within CA264_15205 at 3562.612 kb on - strand, within CA264_15205 at 3562.612 kb on - strand, within CA264_15205 at 3562.677 kb on - strand, within CA264_15205 at 3562.723 kb on + strand, within CA264_15205 at 3562.767 kb on + strand, within CA264_15205 at 3562.770 kb on + strand, within CA264_15205 at 3562.770 kb on + strand, within CA264_15205 at 3562.950 kb on - strand, within CA264_15205 at 3562.969 kb on + strand, within CA264_15205 at 3562.971 kb on + strand, within CA264_15205 at 3562.972 kb on - strand, within CA264_15205 at 3563.121 kb on - strand, within CA264_15205 at 3563.186 kb on + strand, within CA264_15205 at 3563.186 kb on + strand, within CA264_15205 at 3563.187 kb on - strand, within CA264_15205 at 3563.372 kb on + strand at 3563.411 kb on - strand at 3563.411 kb on - strand at 3564.030 kb on + strand at 3564.031 kb on - strand at 3564.034 kb on - strand at 3564.036 kb on + strand at 3564.036 kb on + strand at 3564.037 kb on - strand at 3564.038 kb on + strand at 3564.039 kb on - strand at 3564.040 kb on + strand at 3564.187 kb on + strand, within CA264_15215 at 3564.258 kb on + strand, within CA264_15215 at 3564.286 kb on - strand, within CA264_15215 at 3564.326 kb on + strand, within CA264_15215
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml remove 3,561,323 - CA264_15200 0.47 -0.8 3,561,565 - CA264_15200 0.62 -2.1 3,561,699 - CA264_15200 0.70 -0.4 3,561,717 - CA264_15200 0.71 -1.0 3,561,735 - CA264_15200 0.72 -0.0 3,561,769 - CA264_15200 0.74 -1.8 3,561,769 - CA264_15200 0.74 -0.9 3,561,771 + CA264_15200 0.74 -4.5 3,561,774 + CA264_15200 0.74 -3.5 3,561,782 + CA264_15200 0.75 -0.3 3,561,789 + CA264_15200 0.75 -2.0 3,561,789 + CA264_15200 0.75 -3.9 3,561,790 - CA264_15200 0.75 -1.1 3,561,791 + CA264_15200 0.75 -1.7 3,561,792 - CA264_15200 0.76 -0.6 3,561,871 - CA264_15200 0.80 -1.2 3,561,901 - CA264_15200 0.82 -1.3 3,561,907 - CA264_15200 0.83 -1.6 3,561,979 - CA264_15200 0.87 -0.3 3,561,982 - CA264_15200 0.87 -1.8 3,562,063 - -0.2 3,562,066 - -0.4 3,562,066 - -1.0 3,562,072 - -1.5 3,562,209 - +2.4 3,562,209 - -0.8 3,562,213 + -0.6 3,562,316 + -1.9 3,562,470 + CA264_15205 0.17 +0.1 3,562,512 + CA264_15205 0.21 +0.1 3,562,513 - CA264_15205 0.21 +0.6 3,562,612 - CA264_15205 0.30 -0.4 3,562,612 - CA264_15205 0.30 -0.8 3,562,677 - CA264_15205 0.37 +0.7 3,562,723 + CA264_15205 0.41 -0.9 3,562,767 + CA264_15205 0.45 -1.5 3,562,770 + CA264_15205 0.46 -1.0 3,562,770 + CA264_15205 0.46 -0.8 3,562,950 - CA264_15205 0.63 -0.4 3,562,969 + CA264_15205 0.65 -1.7 3,562,971 + CA264_15205 0.65 -0.5 3,562,972 - CA264_15205 0.65 -0.7 3,563,121 - CA264_15205 0.80 -0.5 3,563,186 + CA264_15205 0.86 -0.6 3,563,186 + CA264_15205 0.86 -2.6 3,563,187 - CA264_15205 0.86 +0.2 3,563,372 + -1.0 3,563,411 - +0.2 3,563,411 - -1.2 3,564,030 + -0.6 3,564,031 - -0.4 3,564,034 - -0.2 3,564,036 + +2.4 3,564,036 + -1.1 3,564,037 - +0.4 3,564,038 + -1.7 3,564,039 - -0.7 3,564,040 + -0.6 3,564,187 + CA264_15215 0.21 -0.8 3,564,258 + CA264_15215 0.32 +0.8 3,564,286 - CA264_15215 0.36 -0.2 3,564,326 + CA264_15215 0.42 -0.1
Or see this region's nucleotide sequence