Experiment: m.b. Paraquat dichloride 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14065 and CA264_14070 are separated by 200 nucleotides CA264_14070 and CA264_14075 are separated by 143 nucleotides
CA264_14065: CA264_14065 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,296,612 to 3,297,733
_14065
CA264_14070: CA264_14070 - catalase, at 3,297,934 to 3,299,571
_14070
CA264_14075: CA264_14075 - metalloprotease, at 3,299,715 to 3,302,867
_14075
Position (kb)
3297
3298
3299
3300 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3296.967 kb on + strand, within CA264_14065 at 3296.968 kb on - strand, within CA264_14065 at 3296.991 kb on - strand, within CA264_14065 at 3297.069 kb on + strand, within CA264_14065 at 3297.162 kb on + strand, within CA264_14065 at 3297.162 kb on + strand, within CA264_14065 at 3297.189 kb on + strand, within CA264_14065 at 3297.189 kb on + strand, within CA264_14065 at 3297.396 kb on - strand, within CA264_14065 at 3297.431 kb on + strand, within CA264_14065 at 3297.431 kb on + strand, within CA264_14065 at 3297.432 kb on - strand, within CA264_14065 at 3297.629 kb on + strand at 3297.800 kb on + strand at 3297.859 kb on - strand at 3297.882 kb on + strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.883 kb on - strand at 3297.884 kb on + strand at 3297.884 kb on + strand at 3297.890 kb on + strand at 3297.897 kb on + strand at 3297.897 kb on + strand at 3297.898 kb on - strand at 3297.898 kb on - strand at 3297.898 kb on - strand at 3297.898 kb on - strand at 3297.905 kb on + strand at 3297.909 kb on + strand at 3297.910 kb on - strand at 3298.343 kb on - strand, within CA264_14070 at 3298.383 kb on + strand, within CA264_14070 at 3298.384 kb on - strand, within CA264_14070 at 3298.559 kb on - strand, within CA264_14070 at 3298.591 kb on + strand, within CA264_14070 at 3298.592 kb on - strand, within CA264_14070 at 3298.593 kb on + strand, within CA264_14070 at 3298.594 kb on - strand, within CA264_14070 at 3298.949 kb on + strand, within CA264_14070 at 3299.008 kb on + strand, within CA264_14070 at 3299.083 kb on + strand, within CA264_14070 at 3299.083 kb on + strand at 3299.084 kb on - strand, within CA264_14070 at 3299.084 kb on - strand, within CA264_14070 at 3299.084 kb on - strand, within CA264_14070 at 3299.084 kb on - strand, within CA264_14070 at 3299.085 kb on + strand, within CA264_14070 at 3299.085 kb on + strand, within CA264_14070 at 3299.085 kb on + strand, within CA264_14070 at 3299.086 kb on - strand, within CA264_14070 at 3299.086 kb on - strand, within CA264_14070 at 3299.107 kb on - strand, within CA264_14070 at 3299.107 kb on - strand, within CA264_14070 at 3299.107 kb on - strand, within CA264_14070 at 3299.115 kb on + strand, within CA264_14070 at 3299.156 kb on - strand, within CA264_14070 at 3299.181 kb on - strand, within CA264_14070 at 3299.209 kb on + strand, within CA264_14070 at 3299.210 kb on - strand, within CA264_14070 at 3299.249 kb on + strand, within CA264_14070 at 3299.374 kb on - strand, within CA264_14070 at 3299.381 kb on + strand, within CA264_14070 at 3299.382 kb on - strand, within CA264_14070 at 3299.436 kb on + strand at 3299.437 kb on - strand at 3299.569 kb on + strand at 3299.569 kb on + strand at 3299.569 kb on + strand at 3299.570 kb on - strand at 3299.570 kb on - strand at 3299.597 kb on + strand at 3299.626 kb on - strand at 3299.626 kb on - strand at 3299.631 kb on + strand at 3299.632 kb on - strand at 3299.674 kb on + strand at 3299.674 kb on + strand at 3299.696 kb on + strand at 3299.697 kb on - strand at 3299.717 kb on - strand at 3299.776 kb on + strand at 3299.776 kb on + strand at 3299.777 kb on - strand at 3299.777 kb on - strand at 3299.818 kb on + strand at 3299.819 kb on - strand at 3299.859 kb on + strand at 3299.933 kb on + strand at 3300.024 kb on - strand at 3300.171 kb on + strand, within CA264_14075 at 3300.171 kb on + strand, within CA264_14075 at 3300.171 kb on + strand, within CA264_14075 at 3300.173 kb on + strand, within CA264_14075 at 3300.209 kb on + strand, within CA264_14075 at 3300.225 kb on - strand, within CA264_14075 at 3300.232 kb on + strand, within CA264_14075 at 3300.232 kb on + strand, within CA264_14075 at 3300.233 kb on - strand, within CA264_14075 at 3300.233 kb on - strand, within CA264_14075 at 3300.236 kb on + strand, within CA264_14075 at 3300.236 kb on + strand, within CA264_14075 at 3300.254 kb on + strand, within CA264_14075 at 3300.255 kb on - strand, within CA264_14075 at 3300.274 kb on + strand, within CA264_14075 at 3300.275 kb on - strand, within CA264_14075 at 3300.275 kb on - strand, within CA264_14075 at 3300.275 kb on - strand, within CA264_14075 at 3300.275 kb on - strand, within CA264_14075 at 3300.278 kb on + strand, within CA264_14075 at 3300.278 kb on + strand, within CA264_14075 at 3300.279 kb on - strand, within CA264_14075 at 3300.316 kb on + strand, within CA264_14075 at 3300.317 kb on - strand, within CA264_14075 at 3300.454 kb on + strand, within CA264_14075 at 3300.455 kb on - strand, within CA264_14075 at 3300.480 kb on + strand, within CA264_14075 at 3300.521 kb on + strand, within CA264_14075
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml remove 3,296,967 + CA264_14065 0.32 -1.1 3,296,968 - CA264_14065 0.32 +0.9 3,296,991 - CA264_14065 0.34 -0.9 3,297,069 + CA264_14065 0.41 -0.2 3,297,162 + CA264_14065 0.49 +0.4 3,297,162 + CA264_14065 0.49 -1.3 3,297,189 + CA264_14065 0.51 -0.8 3,297,189 + CA264_14065 0.51 -1.9 3,297,396 - CA264_14065 0.70 +0.2 3,297,431 + CA264_14065 0.73 -0.5 3,297,431 + CA264_14065 0.73 -0.2 3,297,432 - CA264_14065 0.73 -0.7 3,297,629 + -0.1 3,297,800 + -0.0 3,297,859 - -1.9 3,297,882 + +0.1 3,297,883 - -0.1 3,297,883 - -0.7 3,297,883 - -0.2 3,297,883 - -0.0 3,297,883 - +0.3 3,297,883 - +0.9 3,297,883 - +0.8 3,297,883 - -0.2 3,297,884 + +0.2 3,297,884 + +0.2 3,297,890 + +1.1 3,297,897 + +0.1 3,297,897 + -0.4 3,297,898 - -0.3 3,297,898 - +0.1 3,297,898 - -0.3 3,297,898 - -0.0 3,297,905 + -0.7 3,297,909 + +0.3 3,297,910 - -0.1 3,298,343 - CA264_14070 0.25 +0.3 3,298,383 + CA264_14070 0.27 +0.6 3,298,384 - CA264_14070 0.27 -0.6 3,298,559 - CA264_14070 0.38 -0.4 3,298,591 + CA264_14070 0.40 -1.0 3,298,592 - CA264_14070 0.40 +0.1 3,298,593 + CA264_14070 0.40 -0.5 3,298,594 - CA264_14070 0.40 -0.4 3,298,949 + CA264_14070 0.62 +0.0 3,299,008 + CA264_14070 0.66 +0.2 3,299,083 + CA264_14070 0.70 -0.8 3,299,083 + +1.9 3,299,084 - CA264_14070 0.70 +0.1 3,299,084 - CA264_14070 0.70 -0.5 3,299,084 - CA264_14070 0.70 -0.5 3,299,084 - CA264_14070 0.70 +0.2 3,299,085 + CA264_14070 0.70 +1.1 3,299,085 + CA264_14070 0.70 -0.7 3,299,085 + CA264_14070 0.70 -0.1 3,299,086 - CA264_14070 0.70 -0.2 3,299,086 - CA264_14070 0.70 -0.2 3,299,107 - CA264_14070 0.72 -1.4 3,299,107 - CA264_14070 0.72 -1.4 3,299,107 - CA264_14070 0.72 -0.2 3,299,115 + CA264_14070 0.72 +0.2 3,299,156 - CA264_14070 0.75 +0.0 3,299,181 - CA264_14070 0.76 -1.4 3,299,209 + CA264_14070 0.78 -1.0 3,299,210 - CA264_14070 0.78 -0.5 3,299,249 + CA264_14070 0.80 +0.3 3,299,374 - CA264_14070 0.88 -1.0 3,299,381 + CA264_14070 0.88 +0.1 3,299,382 - CA264_14070 0.88 -0.3 3,299,436 + +1.3 3,299,437 - +0.4 3,299,569 + +0.0 3,299,569 + +0.1 3,299,569 + -0.7 3,299,570 - -0.4 3,299,570 - -0.1 3,299,597 + -0.3 3,299,626 - -0.1 3,299,626 - +0.4 3,299,631 + -0.4 3,299,632 - +0.0 3,299,674 + +0.2 3,299,674 + +0.6 3,299,696 + +0.7 3,299,697 - +0.6 3,299,717 - +0.4 3,299,776 + +0.9 3,299,776 + +0.1 3,299,777 - +0.0 3,299,777 - -0.7 3,299,818 + -0.1 3,299,819 - -0.1 3,299,859 + +0.8 3,299,933 + -1.1 3,300,024 - -0.7 3,300,171 + CA264_14075 0.14 -0.2 3,300,171 + CA264_14075 0.14 -0.1 3,300,171 + CA264_14075 0.14 +0.4 3,300,173 + CA264_14075 0.15 -0.1 3,300,209 + CA264_14075 0.16 -0.5 3,300,225 - CA264_14075 0.16 -0.1 3,300,232 + CA264_14075 0.16 +0.1 3,300,232 + CA264_14075 0.16 +0.6 3,300,233 - CA264_14075 0.16 -0.9 3,300,233 - CA264_14075 0.16 -0.1 3,300,236 + CA264_14075 0.17 -0.6 3,300,236 + CA264_14075 0.17 +0.7 3,300,254 + CA264_14075 0.17 -0.1 3,300,255 - CA264_14075 0.17 -0.0 3,300,274 + CA264_14075 0.18 +0.5 3,300,275 - CA264_14075 0.18 -0.6 3,300,275 - CA264_14075 0.18 -1.4 3,300,275 - CA264_14075 0.18 -0.3 3,300,275 - CA264_14075 0.18 +0.6 3,300,278 + CA264_14075 0.18 +1.1 3,300,278 + CA264_14075 0.18 +0.1 3,300,279 - CA264_14075 0.18 +0.7 3,300,316 + CA264_14075 0.19 +0.3 3,300,317 - CA264_14075 0.19 -0.4 3,300,454 + CA264_14075 0.23 -0.5 3,300,455 - CA264_14075 0.23 +0.5 3,300,480 + CA264_14075 0.24 -1.0 3,300,521 + CA264_14075 0.26 -0.2
Or see this region's nucleotide sequence