Experiment: m.b. Paraquat dichloride 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11045 and CA264_11050 are separated by 96 nucleotides CA264_11050 and CA264_11055 are separated by 116 nucleotides CA264_11055 and CA264_11060 are separated by 119 nucleotides CA264_11060 and CA264_11065 are separated by 14 nucleotides CA264_11065 and CA264_11070 are separated by 11 nucleotides
CA264_11045: CA264_11045 - threonylcarbamoyl-AMP synthase, at 2,551,108 to 2,551,680
_11045
CA264_11050: CA264_11050 - methylmalonyl-CoA epimerase, at 2,551,777 to 2,552,178
_11050
CA264_11055: CA264_11055 - cysteine desulfurase, at 2,552,295 to 2,553,509
_11055
CA264_11060: CA264_11060 - iron-sulfur cluster scaffold-like protein, at 2,553,629 to 2,554,042
_11060
CA264_11065: CA264_11065 - hypothetical protein, at 2,554,057 to 2,554,464
_11065
CA264_11070: CA264_11070 - iron-sulfur cluster assembly accessory protein, at 2,554,476 to 2,554,802
_11070
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-2
-1
0
1 at 2551.669 kb on + strand at 2551.783 kb on + strand at 2551.924 kb on + strand, within CA264_11050 at 2551.924 kb on + strand, within CA264_11050 at 2551.924 kb on + strand, within CA264_11050 at 2551.947 kb on + strand, within CA264_11050 at 2551.947 kb on + strand, within CA264_11050 at 2551.948 kb on - strand, within CA264_11050 at 2552.038 kb on + strand, within CA264_11050 at 2552.090 kb on + strand, within CA264_11050 at 2552.090 kb on + strand, within CA264_11050 at 2552.161 kb on - strand at 2552.167 kb on + strand at 2552.168 kb on - strand at 2552.190 kb on - strand at 2552.202 kb on + strand at 2552.239 kb on + strand at 2553.482 kb on + strand at 2553.594 kb on - strand at 2554.121 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.191 kb on + strand, within CA264_11065 at 2554.191 kb on + strand, within CA264_11065 at 2554.312 kb on + strand, within CA264_11065 at 2554.375 kb on - strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.382 kb on - strand, within CA264_11065 at 2554.400 kb on + strand, within CA264_11065 at 2554.406 kb on - strand, within CA264_11065 at 2554.425 kb on + strand at 2554.425 kb on + strand at 2554.425 kb on + strand at 2554.425 kb on + strand at 2554.426 kb on - strand at 2554.427 kb on + strand at 2554.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml remove 2,551,669 + +0.7 2,551,783 + -0.4 2,551,924 + CA264_11050 0.37 -1.1 2,551,924 + CA264_11050 0.37 +1.0 2,551,924 + CA264_11050 0.37 -0.8 2,551,947 + CA264_11050 0.42 -0.4 2,551,947 + CA264_11050 0.42 -1.4 2,551,948 - CA264_11050 0.43 +0.5 2,552,038 + CA264_11050 0.65 -0.6 2,552,090 + CA264_11050 0.78 -1.2 2,552,090 + CA264_11050 0.78 -1.2 2,552,161 - +0.9 2,552,167 + -0.2 2,552,168 - -0.7 2,552,190 - -0.6 2,552,202 + +1.3 2,552,239 + -1.7 2,553,482 + +0.2 2,553,594 - -2.3 2,554,121 + CA264_11065 0.16 -0.1 2,554,127 + CA264_11065 0.17 -0.5 2,554,127 + CA264_11065 0.17 -0.7 2,554,127 + CA264_11065 0.17 -1.4 2,554,127 + CA264_11065 0.17 -0.1 2,554,191 + CA264_11065 0.33 +0.6 2,554,191 + CA264_11065 0.33 -0.7 2,554,312 + CA264_11065 0.62 -1.3 2,554,375 - CA264_11065 0.78 -0.5 2,554,381 + CA264_11065 0.79 +1.0 2,554,381 + CA264_11065 0.79 -0.5 2,554,381 + CA264_11065 0.79 +0.2 2,554,381 + CA264_11065 0.79 -0.1 2,554,382 - CA264_11065 0.80 -0.2 2,554,400 + CA264_11065 0.84 +0.6 2,554,406 - CA264_11065 0.86 -0.4 2,554,425 + -0.4 2,554,425 + +0.5 2,554,425 + +0.3 2,554,425 + -0.6 2,554,426 - +0.2 2,554,427 + +1.0 2,554,446 - +0.2
Or see this region's nucleotide sequence