Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10335

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_10330 and CA264_10335 are separated by 11 nucleotidesCA264_10335 and CA264_10340 are separated by 715 nucleotides CA264_10330: CA264_10330 - hypothetical protein, at 2,400,187 to 2,401,440 _10330 CA264_10335: CA264_10335 - conjugal transfer protein TraG, at 2,401,452 to 2,403,434 _10335 CA264_10340: CA264_10340 - recombinase family protein, at 2,404,150 to 2,405,688 _10340 Position (kb) 2401 2402 2403 2404Strain fitness (log2 ratio) -2 -1 0 1at 2400.455 kb on - strand, within CA264_10330at 2400.488 kb on - strand, within CA264_10330at 2400.579 kb on + strand, within CA264_10330at 2400.580 kb on - strand, within CA264_10330at 2400.631 kb on + strand, within CA264_10330at 2400.632 kb on - strand, within CA264_10330at 2400.769 kb on + strand, within CA264_10330at 2400.775 kb on + strand, within CA264_10330at 2400.775 kb on + strand, within CA264_10330at 2400.878 kb on - strand, within CA264_10330at 2400.921 kb on - strand, within CA264_10330at 2400.946 kb on + strand, within CA264_10330at 2401.136 kb on - strand, within CA264_10330at 2401.143 kb on - strand, within CA264_10330at 2401.143 kb on - strand, within CA264_10330at 2401.147 kb on + strand, within CA264_10330at 2401.148 kb on - strand, within CA264_10330at 2401.148 kb on - strand, within CA264_10330at 2401.151 kb on + strand, within CA264_10330at 2401.186 kb on - strand, within CA264_10330at 2401.191 kb on - strand, within CA264_10330at 2401.194 kb on + strand, within CA264_10330at 2401.195 kb on - strand, within CA264_10330at 2401.201 kb on + strand, within CA264_10330at 2401.202 kb on - strand, within CA264_10330at 2401.231 kb on - strand, within CA264_10330at 2401.231 kb on - strand, within CA264_10330at 2401.231 kb on - strand, within CA264_10330at 2401.231 kb on - strand, within CA264_10330at 2401.379 kb on - strandat 2401.432 kb on - strandat 2401.448 kb on - strandat 2401.540 kb on - strandat 2401.551 kb on + strandat 2401.552 kb on - strandat 2401.676 kb on + strand, within CA264_10335at 2401.764 kb on + strand, within CA264_10335at 2401.785 kb on + strand, within CA264_10335at 2401.787 kb on - strand, within CA264_10335at 2401.788 kb on + strand, within CA264_10335at 2401.788 kb on + strand, within CA264_10335at 2401.974 kb on + strand, within CA264_10335at 2402.000 kb on + strand, within CA264_10335at 2402.191 kb on - strand, within CA264_10335at 2402.195 kb on + strand, within CA264_10335at 2402.196 kb on - strand, within CA264_10335at 2402.196 kb on - strand, within CA264_10335at 2402.315 kb on + strand, within CA264_10335at 2402.433 kb on + strand, within CA264_10335at 2402.502 kb on + strand, within CA264_10335at 2402.517 kb on - strand, within CA264_10335at 2402.517 kb on - strandat 2402.757 kb on + strand, within CA264_10335at 2402.758 kb on - strand, within CA264_10335at 2402.778 kb on + strand, within CA264_10335at 2402.778 kb on + strand, within CA264_10335at 2402.877 kb on - strand, within CA264_10335at 2402.882 kb on - strand, within CA264_10335at 2403.090 kb on - strand, within CA264_10335at 2403.109 kb on + strand, within CA264_10335at 2403.109 kb on + strand, within CA264_10335at 2403.109 kb on + strand, within CA264_10335at 2403.110 kb on - strand, within CA264_10335at 2403.110 kb on - strand, within CA264_10335at 2403.110 kb on - strand, within CA264_10335at 2403.282 kb on + strandat 2403.325 kb on + strandat 2403.432 kb on + strandat 2403.493 kb on - strandat 2403.527 kb on + strandat 2403.528 kb on - strandat 2403.547 kb on + strandat 2403.550 kb on + strandat 2403.551 kb on - strandat 2403.567 kb on - strandat 2403.579 kb on - strandat 2403.656 kb on + strandat 2403.657 kb on - strandat 2403.687 kb on + strandat 2403.690 kb on + strandat 2403.695 kb on + strandat 2403.700 kb on + strandat 2403.701 kb on - strandat 2403.701 kb on - strandat 2403.826 kb on - strandat 2403.833 kb on - strandat 2403.902 kb on + strandat 2403.903 kb on - strandat 2403.932 kb on + strandat 2403.933 kb on - strandat 2403.947 kb on - strandat 2403.965 kb on - strandat 2404.028 kb on - strandat 2404.064 kb on - strandat 2404.125 kb on + strandat 2404.125 kb on + strandat 2404.130 kb on - strandat 2404.134 kb on - strandat 2404.167 kb on - strandat 2404.168 kb on + strandat 2404.383 kb on + strand, within CA264_10340at 2404.431 kb on + strand, within CA264_10340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
remove
2,400,455 - CA264_10330 0.21 +0.6
2,400,488 - CA264_10330 0.24 -0.6
2,400,579 + CA264_10330 0.31 -0.2
2,400,580 - CA264_10330 0.31 -0.1
2,400,631 + CA264_10330 0.35 -1.1
2,400,632 - CA264_10330 0.35 -0.3
2,400,769 + CA264_10330 0.46 +1.2
2,400,775 + CA264_10330 0.47 +0.2
2,400,775 + CA264_10330 0.47 -0.1
2,400,878 - CA264_10330 0.55 -0.2
2,400,921 - CA264_10330 0.59 -0.4
2,400,946 + CA264_10330 0.61 +0.2
2,401,136 - CA264_10330 0.76 +0.1
2,401,143 - CA264_10330 0.76 -0.3
2,401,143 - CA264_10330 0.76 -0.4
2,401,147 + CA264_10330 0.77 -0.1
2,401,148 - CA264_10330 0.77 -1.3
2,401,148 - CA264_10330 0.77 +0.2
2,401,151 + CA264_10330 0.77 +0.0
2,401,186 - CA264_10330 0.80 -1.0
2,401,191 - CA264_10330 0.80 -0.8
2,401,194 + CA264_10330 0.80 -0.2
2,401,195 - CA264_10330 0.80 -0.2
2,401,201 + CA264_10330 0.81 +0.7
2,401,202 - CA264_10330 0.81 +0.5
2,401,231 - CA264_10330 0.83 -0.3
2,401,231 - CA264_10330 0.83 -0.6
2,401,231 - CA264_10330 0.83 +1.5
2,401,231 - CA264_10330 0.83 -1.0
2,401,379 - -0.7
2,401,432 - -1.1
2,401,448 - -0.5
2,401,540 - +1.3
2,401,551 + +0.1
2,401,552 - -0.0
2,401,676 + CA264_10335 0.11 -0.4
2,401,764 + CA264_10335 0.16 -0.2
2,401,785 + CA264_10335 0.17 -1.8
2,401,787 - CA264_10335 0.17 +0.1
2,401,788 + CA264_10335 0.17 -0.5
2,401,788 + CA264_10335 0.17 -0.1
2,401,974 + CA264_10335 0.26 -0.3
2,402,000 + CA264_10335 0.28 -0.4
2,402,191 - CA264_10335 0.37 +0.0
2,402,195 + CA264_10335 0.37 -0.2
2,402,196 - CA264_10335 0.38 -0.2
2,402,196 - CA264_10335 0.38 -1.1
2,402,315 + CA264_10335 0.44 -0.1
2,402,433 + CA264_10335 0.49 +0.4
2,402,502 + CA264_10335 0.53 -0.2
2,402,517 - CA264_10335 0.54 -0.5
2,402,517 - +1.6
2,402,757 + CA264_10335 0.66 +0.4
2,402,758 - CA264_10335 0.66 -1.1
2,402,778 + CA264_10335 0.67 -1.6
2,402,778 + CA264_10335 0.67 -0.4
2,402,877 - CA264_10335 0.72 -0.1
2,402,882 - CA264_10335 0.72 -0.7
2,403,090 - CA264_10335 0.83 +0.1
2,403,109 + CA264_10335 0.84 +1.6
2,403,109 + CA264_10335 0.84 +0.1
2,403,109 + CA264_10335 0.84 -0.8
2,403,110 - CA264_10335 0.84 -0.5
2,403,110 - CA264_10335 0.84 -0.9
2,403,110 - CA264_10335 0.84 +1.0
2,403,282 + -0.1
2,403,325 + -0.3
2,403,432 + -0.0
2,403,493 - -0.3
2,403,527 + -0.5
2,403,528 - -0.2
2,403,547 + -0.0
2,403,550 + -0.5
2,403,551 - -1.7
2,403,567 - -1.6
2,403,579 - +0.3
2,403,656 + +0.4
2,403,657 - -0.9
2,403,687 + -0.4
2,403,690 + -0.0
2,403,695 + -2.5
2,403,700 + -0.0
2,403,701 - +0.1
2,403,701 - -1.9
2,403,826 - +0.6
2,403,833 - +0.4
2,403,902 + -0.8
2,403,903 - -0.5
2,403,932 + -0.4
2,403,933 - +0.2
2,403,947 - -0.5
2,403,965 - +0.1
2,404,028 - +1.4
2,404,064 - +0.9
2,404,125 + +0.1
2,404,125 + -0.5
2,404,130 - -0.2
2,404,134 - +0.0
2,404,167 - +0.2
2,404,168 + +0.3
2,404,383 + CA264_10340 0.15 -0.1
2,404,431 + CA264_10340 0.18 -0.7

Or see this region's nucleotide sequence