Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05950

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05945 and CA264_05950 are separated by 94 nucleotidesCA264_05950 and CA264_05955 are separated by 301 nucleotides CA264_05945: CA264_05945 - hypothetical protein, at 1,388,671 to 1,389,756 _05945 CA264_05950: CA264_05950 - aldo/keto reductase, at 1,389,851 to 1,390,837 _05950 CA264_05955: CA264_05955 - SDR family oxidoreductase, at 1,391,139 to 1,391,885 _05955 Position (kb) 1389 1390 1391Strain fitness (log2 ratio) -1 0 1at 1388.866 kb on - strand, within CA264_05945at 1388.950 kb on - strand, within CA264_05945at 1389.068 kb on - strand, within CA264_05945at 1389.176 kb on - strand, within CA264_05945at 1389.195 kb on + strand, within CA264_05945at 1389.200 kb on + strand, within CA264_05945at 1389.201 kb on - strand, within CA264_05945at 1389.210 kb on - strand, within CA264_05945at 1389.224 kb on + strand, within CA264_05945at 1389.224 kb on + strand, within CA264_05945at 1389.331 kb on + strand, within CA264_05945at 1389.332 kb on - strand, within CA264_05945at 1389.406 kb on - strand, within CA264_05945at 1389.406 kb on - strand, within CA264_05945at 1389.477 kb on + strand, within CA264_05945at 1389.478 kb on - strand, within CA264_05945at 1389.749 kb on + strandat 1389.860 kb on + strandat 1389.860 kb on + strandat 1389.861 kb on - strandat 1390.098 kb on - strand, within CA264_05950at 1390.234 kb on - strand, within CA264_05950at 1390.308 kb on + strand, within CA264_05950at 1390.342 kb on + strand, within CA264_05950at 1390.342 kb on + strand, within CA264_05950at 1390.342 kb on + strand, within CA264_05950at 1390.343 kb on - strand, within CA264_05950at 1390.474 kb on - strand, within CA264_05950at 1390.474 kb on - strand, within CA264_05950at 1390.474 kb on - strand, within CA264_05950at 1390.476 kb on + strand, within CA264_05950at 1390.476 kb on + strand, within CA264_05950at 1390.477 kb on - strand, within CA264_05950at 1390.477 kb on - strand, within CA264_05950at 1390.478 kb on + strand, within CA264_05950at 1390.479 kb on - strand, within CA264_05950at 1390.479 kb on - strand, within CA264_05950at 1390.479 kb on - strand, within CA264_05950at 1390.494 kb on - strand, within CA264_05950at 1390.532 kb on + strand, within CA264_05950at 1390.533 kb on - strand, within CA264_05950at 1390.634 kb on - strand, within CA264_05950at 1390.721 kb on + strand, within CA264_05950at 1390.721 kb on + strand, within CA264_05950at 1390.722 kb on - strand, within CA264_05950at 1390.722 kb on - strand, within CA264_05950at 1390.758 kb on + strandat 1390.758 kb on + strandat 1390.759 kb on - strandat 1390.821 kb on - strandat 1390.840 kb on + strandat 1390.841 kb on - strandat 1390.843 kb on - strandat 1390.843 kb on - strandat 1390.850 kb on + strandat 1390.905 kb on - strandat 1390.911 kb on - strandat 1390.941 kb on + strandat 1391.040 kb on + strandat 1391.088 kb on - strandat 1391.324 kb on - strand, within CA264_05955at 1391.365 kb on + strand, within CA264_05955at 1391.419 kb on + strand, within CA264_05955at 1391.505 kb on + strand, within CA264_05955at 1391.505 kb on + strand, within CA264_05955at 1391.505 kb on + strand, within CA264_05955at 1391.505 kb on + strand, within CA264_05955at 1391.506 kb on - strand, within CA264_05955at 1391.506 kb on - strand, within CA264_05955at 1391.700 kb on + strand, within CA264_05955at 1391.737 kb on - strand, within CA264_05955at 1391.782 kb on - strand, within CA264_05955at 1391.782 kb on - strand, within CA264_05955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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1,388,866 - CA264_05945 0.18 -0.8
1,388,950 - CA264_05945 0.26 -0.0
1,389,068 - CA264_05945 0.37 -0.7
1,389,176 - CA264_05945 0.47 -0.4
1,389,195 + CA264_05945 0.48 -0.1
1,389,200 + CA264_05945 0.49 -1.1
1,389,201 - CA264_05945 0.49 -0.3
1,389,210 - CA264_05945 0.50 +0.8
1,389,224 + CA264_05945 0.51 -0.8
1,389,224 + CA264_05945 0.51 -0.8
1,389,331 + CA264_05945 0.61 -0.8
1,389,332 - CA264_05945 0.61 +0.4
1,389,406 - CA264_05945 0.68 +0.0
1,389,406 - CA264_05945 0.68 -0.7
1,389,477 + CA264_05945 0.74 -1.0
1,389,478 - CA264_05945 0.74 +1.3
1,389,749 + +0.5
1,389,860 + -0.9
1,389,860 + +1.1
1,389,861 - -0.5
1,390,098 - CA264_05950 0.25 +0.1
1,390,234 - CA264_05950 0.39 -0.7
1,390,308 + CA264_05950 0.46 -0.8
1,390,342 + CA264_05950 0.50 -0.9
1,390,342 + CA264_05950 0.50 +1.0
1,390,342 + CA264_05950 0.50 +0.3
1,390,343 - CA264_05950 0.50 -0.4
1,390,474 - CA264_05950 0.63 -0.8
1,390,474 - CA264_05950 0.63 -0.7
1,390,474 - CA264_05950 0.63 -1.0
1,390,476 + CA264_05950 0.63 +1.1
1,390,476 + CA264_05950 0.63 +0.1
1,390,477 - CA264_05950 0.63 +1.3
1,390,477 - CA264_05950 0.63 +0.1
1,390,478 + CA264_05950 0.64 -1.6
1,390,479 - CA264_05950 0.64 -0.3
1,390,479 - CA264_05950 0.64 +0.1
1,390,479 - CA264_05950 0.64 +0.9
1,390,494 - CA264_05950 0.65 +0.2
1,390,532 + CA264_05950 0.69 +1.0
1,390,533 - CA264_05950 0.69 -0.3
1,390,634 - CA264_05950 0.79 -0.9
1,390,721 + CA264_05950 0.88 +0.5
1,390,721 + CA264_05950 0.88 -1.5
1,390,722 - CA264_05950 0.88 +0.2
1,390,722 - CA264_05950 0.88 -0.7
1,390,758 + -0.6
1,390,758 + +0.2
1,390,759 - -1.7
1,390,821 - -0.1
1,390,840 + -0.8
1,390,841 - +0.7
1,390,843 - -0.1
1,390,843 - -0.2
1,390,850 + -0.3
1,390,905 - -1.1
1,390,911 - -1.2
1,390,941 + -0.2
1,391,040 + +0.5
1,391,088 - -0.3
1,391,324 - CA264_05955 0.25 -0.8
1,391,365 + CA264_05955 0.30 -1.7
1,391,419 + CA264_05955 0.37 -0.4
1,391,505 + CA264_05955 0.49 -0.1
1,391,505 + CA264_05955 0.49 +1.0
1,391,505 + CA264_05955 0.49 -0.0
1,391,505 + CA264_05955 0.49 +0.6
1,391,506 - CA264_05955 0.49 -0.9
1,391,506 - CA264_05955 0.49 +0.7
1,391,700 + CA264_05955 0.75 +0.5
1,391,737 - CA264_05955 0.80 -0.5
1,391,782 - CA264_05955 0.86 +0.7
1,391,782 - CA264_05955 0.86 -0.2

Or see this region's nucleotide sequence