Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04985

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04980 and CA264_04985 overlap by 1 nucleotidesCA264_04985 and CA264_04990 are separated by 3 nucleotides CA264_04980: CA264_04980 - tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase, at 1,156,302 to 1,157,429 _04980 CA264_04985: CA264_04985 - hypothetical protein, at 1,157,429 to 1,158,184 _04985 CA264_04990: CA264_04990 - T9SS C-terminal target domain-containing protein, at 1,158,188 to 1,159,852 _04990 Position (kb) 1157 1158 1159Strain fitness (log2 ratio) -2 -1 0 1at 1157.396 kb on + strandat 1157.406 kb on + strandat 1157.531 kb on + strand, within CA264_04985at 1157.562 kb on - strand, within CA264_04985at 1157.568 kb on + strand, within CA264_04985at 1157.583 kb on - strand, within CA264_04985at 1157.669 kb on + strand, within CA264_04985at 1157.730 kb on - strand, within CA264_04985at 1157.862 kb on - strand, within CA264_04985at 1157.895 kb on - strand, within CA264_04985at 1157.913 kb on - strand, within CA264_04985at 1157.913 kb on - strand, within CA264_04985at 1157.913 kb on - strand, within CA264_04985at 1157.914 kb on + strand, within CA264_04985at 1157.914 kb on + strand, within CA264_04985at 1157.914 kb on + strand, within CA264_04985at 1157.915 kb on - strand, within CA264_04985at 1157.915 kb on - strand, within CA264_04985at 1157.915 kb on - strand, within CA264_04985at 1157.918 kb on + strand, within CA264_04985at 1157.919 kb on - strand, within CA264_04985at 1158.035 kb on + strand, within CA264_04985at 1158.036 kb on - strand, within CA264_04985at 1158.059 kb on + strand, within CA264_04985at 1158.059 kb on + strand, within CA264_04985at 1158.068 kb on + strand, within CA264_04985at 1158.069 kb on - strand, within CA264_04985at 1158.083 kb on + strand, within CA264_04985at 1158.116 kb on + strandat 1158.121 kb on + strandat 1158.182 kb on + strandat 1158.187 kb on + strandat 1158.187 kb on + strandat 1158.188 kb on - strandat 1158.207 kb on - strandat 1158.207 kb on - strandat 1158.256 kb on + strandat 1158.257 kb on - strandat 1158.264 kb on + strandat 1158.282 kb on + strandat 1158.286 kb on - strandat 1158.287 kb on + strandat 1158.288 kb on - strandat 1158.314 kb on + strandat 1158.314 kb on + strandat 1158.314 kb on + strandat 1158.420 kb on - strand, within CA264_04990at 1158.433 kb on - strand, within CA264_04990at 1158.433 kb on - strand, within CA264_04990at 1158.433 kb on - strand, within CA264_04990at 1158.453 kb on + strand, within CA264_04990at 1158.453 kb on + strand, within CA264_04990at 1158.454 kb on - strand, within CA264_04990at 1158.454 kb on - strand, within CA264_04990at 1158.454 kb on - strand, within CA264_04990at 1158.459 kb on - strand, within CA264_04990at 1158.533 kb on + strand, within CA264_04990at 1158.534 kb on - strand, within CA264_04990at 1158.534 kb on - strand, within CA264_04990at 1158.562 kb on + strandat 1158.577 kb on + strand, within CA264_04990at 1158.604 kb on + strand, within CA264_04990at 1158.604 kb on + strand, within CA264_04990at 1158.723 kb on - strand, within CA264_04990at 1158.896 kb on - strand, within CA264_04990at 1158.896 kb on - strand, within CA264_04990at 1158.896 kb on - strand, within CA264_04990at 1158.988 kb on + strand, within CA264_04990at 1158.988 kb on + strand, within CA264_04990at 1158.989 kb on - strand, within CA264_04990at 1158.989 kb on - strand, within CA264_04990at 1158.989 kb on - strand, within CA264_04990at 1159.026 kb on - strand, within CA264_04990at 1159.071 kb on - strand, within CA264_04990at 1159.100 kb on + strand, within CA264_04990at 1159.100 kb on + strand, within CA264_04990at 1159.101 kb on - strand, within CA264_04990at 1159.102 kb on + strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.106 kb on + strand, within CA264_04990

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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1,157,396 + -0.2
1,157,406 + -0.0
1,157,531 + CA264_04985 0.13 +0.0
1,157,562 - CA264_04985 0.18 -0.7
1,157,568 + CA264_04985 0.18 +0.6
1,157,583 - CA264_04985 0.20 -2.4
1,157,669 + CA264_04985 0.32 -1.0
1,157,730 - CA264_04985 0.40 -1.8
1,157,862 - CA264_04985 0.57 +0.1
1,157,895 - CA264_04985 0.62 -0.9
1,157,913 - CA264_04985 0.64 +0.1
1,157,913 - CA264_04985 0.64 -0.7
1,157,913 - CA264_04985 0.64 -0.6
1,157,914 + CA264_04985 0.64 +0.1
1,157,914 + CA264_04985 0.64 +0.3
1,157,914 + CA264_04985 0.64 -0.3
1,157,915 - CA264_04985 0.64 +0.5
1,157,915 - CA264_04985 0.64 -0.6
1,157,915 - CA264_04985 0.64 -1.4
1,157,918 + CA264_04985 0.65 +0.1
1,157,919 - CA264_04985 0.65 +1.3
1,158,035 + CA264_04985 0.80 +0.1
1,158,036 - CA264_04985 0.80 +0.7
1,158,059 + CA264_04985 0.83 +0.4
1,158,059 + CA264_04985 0.83 +0.5
1,158,068 + CA264_04985 0.85 +0.7
1,158,069 - CA264_04985 0.85 -0.5
1,158,083 + CA264_04985 0.87 +0.4
1,158,116 + -0.4
1,158,121 + +0.4
1,158,182 + -0.6
1,158,187 + -0.3
1,158,187 + -0.3
1,158,188 - +0.6
1,158,207 - +0.0
1,158,207 - +0.1
1,158,256 + -0.4
1,158,257 - -0.4
1,158,264 + -0.1
1,158,282 + -2.0
1,158,286 - +1.0
1,158,287 + +0.3
1,158,288 - -0.4
1,158,314 + -0.5
1,158,314 + -0.5
1,158,314 + +0.1
1,158,420 - CA264_04990 0.14 -0.0
1,158,433 - CA264_04990 0.15 -0.2
1,158,433 - CA264_04990 0.15 +0.7
1,158,433 - CA264_04990 0.15 -0.7
1,158,453 + CA264_04990 0.16 +0.1
1,158,453 + CA264_04990 0.16 -1.1
1,158,454 - CA264_04990 0.16 -0.5
1,158,454 - CA264_04990 0.16 -1.6
1,158,454 - CA264_04990 0.16 -0.4
1,158,459 - CA264_04990 0.16 -0.2
1,158,533 + CA264_04990 0.21 -0.9
1,158,534 - CA264_04990 0.21 -0.6
1,158,534 - CA264_04990 0.21 -0.6
1,158,562 + +1.3
1,158,577 + CA264_04990 0.23 +0.1
1,158,604 + CA264_04990 0.25 -1.3
1,158,604 + CA264_04990 0.25 +0.2
1,158,723 - CA264_04990 0.32 +0.3
1,158,896 - CA264_04990 0.43 -0.5
1,158,896 - CA264_04990 0.43 -0.7
1,158,896 - CA264_04990 0.43 -0.9
1,158,988 + CA264_04990 0.48 -0.2
1,158,988 + CA264_04990 0.48 +0.8
1,158,989 - CA264_04990 0.48 -0.5
1,158,989 - CA264_04990 0.48 -0.6
1,158,989 - CA264_04990 0.48 -0.1
1,159,026 - CA264_04990 0.50 +1.2
1,159,071 - CA264_04990 0.53 +0.4
1,159,100 + CA264_04990 0.55 -0.7
1,159,100 + CA264_04990 0.55 -0.2
1,159,101 - CA264_04990 0.55 -0.9
1,159,102 + CA264_04990 0.55 +0.4
1,159,103 - CA264_04990 0.55 -0.4
1,159,103 - CA264_04990 0.55 +0.1
1,159,103 - CA264_04990 0.55 -1.0
1,159,103 - CA264_04990 0.55 -0.1
1,159,103 - CA264_04990 0.55 -0.4
1,159,106 + CA264_04990 0.55 -0.0

Or see this region's nucleotide sequence