Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03510

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03505 and CA264_03510 are separated by 244 nucleotidesCA264_03510 and CA264_03515 are separated by 265 nucleotidesCA264_03515 and CA264_03520 are separated by 153 nucleotides CA264_03505: CA264_03505 - hypothetical protein, at 817,442 to 818,059 _03505 CA264_03510: CA264_03510 - hypothetical protein, at 818,304 to 818,891 _03510 CA264_03515: CA264_03515 - hypothetical protein, at 819,157 to 819,561 _03515 CA264_03520: CA264_03520 - hypothetical protein, at 819,715 to 820,194 _03520 Position (kb) 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1at 817.391 kb on + strandat 817.391 kb on + strandat 817.391 kb on + strandat 817.413 kb on + strandat 817.413 kb on + strandat 817.413 kb on + strandat 817.494 kb on + strandat 817.495 kb on - strandat 817.551 kb on - strand, within CA264_03505at 817.612 kb on + strand, within CA264_03505at 817.612 kb on + strand, within CA264_03505at 817.613 kb on - strand, within CA264_03505at 817.613 kb on - strand, within CA264_03505at 817.614 kb on + strand, within CA264_03505at 817.615 kb on - strand, within CA264_03505at 817.627 kb on + strand, within CA264_03505at 817.653 kb on - strand, within CA264_03505at 817.688 kb on - strand, within CA264_03505at 817.688 kb on - strand, within CA264_03505at 817.719 kb on - strand, within CA264_03505at 817.721 kb on - strand, within CA264_03505at 817.893 kb on - strand, within CA264_03505at 817.928 kb on + strand, within CA264_03505at 817.928 kb on + strand, within CA264_03505at 817.934 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.951 kb on - strand, within CA264_03505at 817.951 kb on - strand, within CA264_03505at 817.977 kb on - strand, within CA264_03505at 818.041 kb on + strandat 818.042 kb on - strandat 818.045 kb on + strandat 818.045 kb on + strandat 818.045 kb on + strandat 818.046 kb on - strandat 818.065 kb on - strandat 818.099 kb on + strandat 818.100 kb on - strandat 818.105 kb on + strandat 818.168 kb on - strandat 818.222 kb on + strandat 818.237 kb on - strandat 818.266 kb on + strandat 818.266 kb on + strandat 818.267 kb on - strandat 818.267 kb on - strandat 818.303 kb on + strandat 818.304 kb on - strandat 818.304 kb on - strandat 818.355 kb on + strandat 818.394 kb on + strand, within CA264_03510at 818.394 kb on + strand, within CA264_03510at 818.395 kb on - strand, within CA264_03510at 818.436 kb on + strand, within CA264_03510at 818.484 kb on + strand, within CA264_03510at 818.485 kb on - strand, within CA264_03510at 818.485 kb on - strand, within CA264_03510at 818.511 kb on + strand, within CA264_03510at 818.512 kb on - strand, within CA264_03510at 818.542 kb on - strand, within CA264_03510at 818.595 kb on + strand, within CA264_03510at 818.596 kb on - strand, within CA264_03510at 818.631 kb on + strand, within CA264_03510at 818.632 kb on - strand, within CA264_03510at 818.651 kb on + strand, within CA264_03510at 818.692 kb on - strand, within CA264_03510at 818.782 kb on - strand, within CA264_03510at 818.887 kb on - strandat 818.887 kb on - strandat 818.887 kb on - strandat 818.902 kb on + strandat 819.047 kb on + strandat 819.141 kb on + strandat 819.153 kb on + strandat 819.153 kb on + strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.154 kb on - strandat 819.158 kb on + strandat 819.161 kb on + strandat 819.161 kb on + strandat 819.162 kb on - strandat 819.277 kb on - strand, within CA264_03515at 819.316 kb on + strand, within CA264_03515at 819.316 kb on + strand, within CA264_03515at 819.317 kb on - strand, within CA264_03515at 819.326 kb on + strand, within CA264_03515at 819.326 kb on + strand, within CA264_03515at 819.326 kb on + strand, within CA264_03515at 819.327 kb on - strand, within CA264_03515at 819.338 kb on + strand, within CA264_03515at 819.398 kb on + strand, within CA264_03515at 819.487 kb on - strand, within CA264_03515at 819.529 kb on + strandat 819.550 kb on + strandat 819.565 kb on + strandat 819.573 kb on + strandat 819.573 kb on + strandat 819.575 kb on + strandat 819.576 kb on - strandat 819.584 kb on + strandat 819.584 kb on + strandat 819.584 kb on + strandat 819.585 kb on - strandat 819.585 kb on - strandat 819.618 kb on - strandat 819.697 kb on + strandat 819.697 kb on + strandat 819.697 kb on + strandat 819.698 kb on - strandat 819.698 kb on - strandat 819.742 kb on - strandat 819.743 kb on + strandat 819.743 kb on + strandat 819.744 kb on - strandat 819.751 kb on + strandat 819.857 kb on + strand, within CA264_03520at 819.858 kb on - strand, within CA264_03520at 819.890 kb on - strand, within CA264_03520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
remove
817,391 + -0.2
817,391 + +0.5
817,391 + +0.2
817,413 + +0.8
817,413 + +0.5
817,413 + +0.3
817,494 + +0.3
817,495 - -2.1
817,551 - CA264_03505 0.18 +0.9
817,612 + CA264_03505 0.28 +0.5
817,612 + CA264_03505 0.28 -0.6
817,613 - CA264_03505 0.28 -0.0
817,613 - CA264_03505 0.28 -0.3
817,614 + CA264_03505 0.28 +0.3
817,615 - CA264_03505 0.28 +0.2
817,627 + CA264_03505 0.30 -0.2
817,653 - CA264_03505 0.34 -2.8
817,688 - CA264_03505 0.40 +0.6
817,688 - CA264_03505 0.40 -0.3
817,719 - CA264_03505 0.45 -0.4
817,721 - CA264_03505 0.45 -0.0
817,893 - CA264_03505 0.73 +0.3
817,928 + CA264_03505 0.79 -0.0
817,928 + CA264_03505 0.79 -0.6
817,934 + CA264_03505 0.80 -0.9
817,942 + CA264_03505 0.81 +1.2
817,942 + CA264_03505 0.81 -0.6
817,942 + CA264_03505 0.81 +1.0
817,943 - CA264_03505 0.81 -0.2
817,943 - CA264_03505 0.81 +0.9
817,943 - CA264_03505 0.81 -0.2
817,951 - CA264_03505 0.82 +1.2
817,951 - CA264_03505 0.82 -0.3
817,977 - CA264_03505 0.87 +0.2
818,041 + -0.1
818,042 - -0.4
818,045 + -0.7
818,045 + +0.5
818,045 + -0.2
818,046 - -0.1
818,065 - -0.6
818,099 + +0.0
818,100 - -1.3
818,105 + -0.4
818,168 - +1.1
818,222 + +0.1
818,237 - +0.2
818,266 + -0.0
818,266 + +0.0
818,267 - -0.1
818,267 - -0.9
818,303 + +0.1
818,304 - +0.3
818,304 - -0.1
818,355 + -1.0
818,394 + CA264_03510 0.15 +0.1
818,394 + CA264_03510 0.15 -0.0
818,395 - CA264_03510 0.15 +0.2
818,436 + CA264_03510 0.22 -0.1
818,484 + CA264_03510 0.31 -0.5
818,485 - CA264_03510 0.31 -0.2
818,485 - CA264_03510 0.31 +0.4
818,511 + CA264_03510 0.35 -0.1
818,512 - CA264_03510 0.35 -0.3
818,542 - CA264_03510 0.40 +0.4
818,595 + CA264_03510 0.49 +0.4
818,596 - CA264_03510 0.50 -0.2
818,631 + CA264_03510 0.56 -0.2
818,632 - CA264_03510 0.56 -0.6
818,651 + CA264_03510 0.59 -1.0
818,692 - CA264_03510 0.66 -0.6
818,782 - CA264_03510 0.81 +0.1
818,887 - -0.3
818,887 - +0.0
818,887 - +1.1
818,902 + -0.4
819,047 + -1.5
819,141 + +0.1
819,153 + +0.0
819,153 + -0.1
819,154 - +0.1
819,154 - -0.0
819,154 - -0.2
819,154 - +0.0
819,154 - +0.2
819,154 - +0.7
819,154 - +1.0
819,158 + +0.7
819,161 + -0.6
819,161 + +0.7
819,162 - -0.5
819,277 - CA264_03515 0.30 +0.1
819,316 + CA264_03515 0.39 -0.3
819,316 + CA264_03515 0.39 +0.1
819,317 - CA264_03515 0.40 +1.1
819,326 + CA264_03515 0.42 -0.7
819,326 + CA264_03515 0.42 -1.2
819,326 + CA264_03515 0.42 -0.0
819,327 - CA264_03515 0.42 -0.0
819,338 + CA264_03515 0.45 -0.9
819,398 + CA264_03515 0.60 -0.9
819,487 - CA264_03515 0.81 +0.1
819,529 + -1.6
819,550 + -0.1
819,565 + -0.1
819,573 + -0.9
819,573 + -0.7
819,575 + -0.0
819,576 - -0.3
819,584 + +0.5
819,584 + -0.1
819,584 + -0.3
819,585 - -1.0
819,585 - +0.4
819,618 - +0.3
819,697 + +0.3
819,697 + -0.9
819,697 + +0.5
819,698 - -0.2
819,698 - -0.1
819,742 - -0.1
819,743 + -0.1
819,743 + +0.3
819,744 - +0.3
819,751 + -0.9
819,857 + CA264_03520 0.30 -0.3
819,858 - CA264_03520 0.30 -0.6
819,890 - CA264_03520 0.36 +0.2

Or see this region's nucleotide sequence