Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02480

Experiment: m.b. Paraquat dichloride 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02475 and CA264_02480 are separated by 65 nucleotidesCA264_02480 and CA264_02485 are separated by 80 nucleotidesCA264_02485 and CA264_02490 are separated by 2 nucleotides CA264_02475: CA264_02475 - xylose isomerase, at 575,349 to 576,635 _02475 CA264_02480: CA264_02480 - 3-dehydroquinate synthase, at 576,701 to 577,879 _02480 CA264_02485: CA264_02485 - polyprenyltransferase, at 577,960 to 578,868 _02485 CA264_02490: CA264_02490 - hydrolase TatD, at 578,871 to 579,812 _02490 Position (kb) 576 577 578Strain fitness (log2 ratio) -2 -1 0 1 2at 575.832 kb on + strand, within CA264_02475at 575.921 kb on - strand, within CA264_02475at 576.096 kb on + strand, within CA264_02475at 576.097 kb on - strand, within CA264_02475at 576.173 kb on - strand, within CA264_02475at 576.302 kb on - strand, within CA264_02475at 576.351 kb on + strand, within CA264_02475at 576.352 kb on - strand, within CA264_02475at 576.403 kb on + strand, within CA264_02475at 576.403 kb on + strand, within CA264_02475at 576.456 kb on + strand, within CA264_02475at 576.457 kb on - strand, within CA264_02475at 576.544 kb on + strandat 576.599 kb on + strandat 576.604 kb on + strandat 576.604 kb on + strandat 576.604 kb on + strandat 576.605 kb on - strandat 576.605 kb on - strandat 576.616 kb on + strandat 576.647 kb on + strandat 576.647 kb on + strandat 576.648 kb on - strandat 576.648 kb on - strandat 576.648 kb on - strandat 576.673 kb on + strandat 576.673 kb on + strandat 576.702 kb on + strandat 576.703 kb on - strandat 576.704 kb on + strandat 576.705 kb on - strandat 576.705 kb on - strandat 576.777 kb on - strandat 577.000 kb on - strand, within CA264_02480at 577.054 kb on - strand, within CA264_02480at 577.261 kb on + strand, within CA264_02480at 577.274 kb on + strand, within CA264_02480at 577.274 kb on + strand, within CA264_02480at 577.457 kb on + strand, within CA264_02480at 577.458 kb on - strand, within CA264_02480at 577.509 kb on - strand, within CA264_02480at 577.509 kb on - strand, within CA264_02480at 577.539 kb on + strand, within CA264_02480at 577.540 kb on - strand, within CA264_02480at 577.570 kb on + strand, within CA264_02480at 577.680 kb on + strand, within CA264_02480at 577.681 kb on - strand, within CA264_02480at 577.745 kb on + strand, within CA264_02480at 577.830 kb on + strandat 577.830 kb on + strandat 577.830 kb on + strandat 577.830 kb on + strandat 577.831 kb on - strandat 577.831 kb on - strandat 577.833 kb on - strandat 577.851 kb on - strandat 577.893 kb on + strandat 577.894 kb on - strandat 577.915 kb on + strandat 577.916 kb on - strandat 577.916 kb on - strandat 577.916 kb on - strandat 577.919 kb on + strandat 577.920 kb on - strandat 577.920 kb on - strandat 577.920 kb on - strandat 577.988 kb on + strandat 578.192 kb on + strand, within CA264_02485at 578.333 kb on + strand, within CA264_02485at 578.333 kb on + strand, within CA264_02485at 578.371 kb on + strand, within CA264_02485at 578.372 kb on - strand, within CA264_02485at 578.475 kb on - strand, within CA264_02485at 578.575 kb on + strand, within CA264_02485at 578.575 kb on + strand, within CA264_02485at 578.576 kb on - strand, within CA264_02485at 578.576 kb on - strand, within CA264_02485at 578.671 kb on + strand, within CA264_02485at 578.672 kb on - strand, within CA264_02485at 578.685 kb on - strand, within CA264_02485at 578.761 kb on - strand, within CA264_02485at 578.799 kb on + strandat 578.800 kb on - strandat 578.800 kb on - strandat 578.802 kb on + strandat 578.802 kb on + strandat 578.803 kb on - strandat 578.849 kb on + strandat 578.850 kb on - strandat 578.877 kb on + strandat 578.877 kb on + strandat 578.877 kb on + strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strandat 578.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml
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575,832 + CA264_02475 0.38 -1.0
575,921 - CA264_02475 0.44 -0.1
576,096 + CA264_02475 0.58 -1.6
576,097 - CA264_02475 0.58 -1.5
576,173 - CA264_02475 0.64 -0.2
576,302 - CA264_02475 0.74 +0.4
576,351 + CA264_02475 0.78 +0.1
576,352 - CA264_02475 0.78 +0.2
576,403 + CA264_02475 0.82 -0.2
576,403 + CA264_02475 0.82 -0.3
576,456 + CA264_02475 0.86 -0.4
576,457 - CA264_02475 0.86 -2.1
576,544 + +0.3
576,599 + -0.4
576,604 + -0.8
576,604 + -0.0
576,604 + +1.0
576,605 - -1.0
576,605 - +0.3
576,616 + -0.8
576,647 + -0.3
576,647 + -0.1
576,648 - +1.4
576,648 - -1.0
576,648 - -0.6
576,673 + +1.7
576,673 + -0.6
576,702 + +0.2
576,703 - -0.3
576,704 + -1.4
576,705 - -0.1
576,705 - +0.3
576,777 - +0.4
577,000 - CA264_02480 0.25 +0.3
577,054 - CA264_02480 0.30 -0.3
577,261 + CA264_02480 0.47 -0.1
577,274 + CA264_02480 0.49 -1.1
577,274 + CA264_02480 0.49 +0.1
577,457 + CA264_02480 0.64 -1.2
577,458 - CA264_02480 0.64 +0.2
577,509 - CA264_02480 0.69 +1.3
577,509 - CA264_02480 0.69 -0.4
577,539 + CA264_02480 0.71 +0.1
577,540 - CA264_02480 0.71 +0.1
577,570 + CA264_02480 0.74 -0.0
577,680 + CA264_02480 0.83 -0.1
577,681 - CA264_02480 0.83 +0.0
577,745 + CA264_02480 0.89 +0.3
577,830 + -0.6
577,830 + +1.9
577,830 + +0.0
577,830 + +0.8
577,831 - +0.2
577,831 - +0.1
577,833 - +0.5
577,851 - -0.4
577,893 + +0.0
577,894 - +0.1
577,915 + -0.2
577,916 - -1.6
577,916 - +0.2
577,916 - +0.0
577,919 + +0.1
577,920 - +0.3
577,920 - -0.6
577,920 - +0.1
577,988 + +1.1
578,192 + CA264_02485 0.26 -0.4
578,333 + CA264_02485 0.41 -0.6
578,333 + CA264_02485 0.41 -0.4
578,371 + CA264_02485 0.45 +0.1
578,372 - CA264_02485 0.45 +1.0
578,475 - CA264_02485 0.57 +0.4
578,575 + CA264_02485 0.68 -0.5
578,575 + CA264_02485 0.68 -0.4
578,576 - CA264_02485 0.68 +1.3
578,576 - CA264_02485 0.68 -1.1
578,671 + CA264_02485 0.78 +0.1
578,672 - CA264_02485 0.78 +0.3
578,685 - CA264_02485 0.80 +0.3
578,761 - CA264_02485 0.88 -0.3
578,799 + -2.1
578,800 - +0.6
578,800 - -0.8
578,802 + -0.1
578,802 + +0.2
578,803 - +0.7
578,849 + +0.2
578,850 - +0.3
578,877 + -0.5
578,877 + +0.6
578,877 + -0.9
578,878 - -0.6
578,878 - -0.3
578,878 - +0.1
578,878 - +0.0
578,878 - -2.0

Or see this region's nucleotide sequence