Experiment: m.b. Paraquat dichloride 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01705 and CA264_01710 are separated by 195 nucleotides CA264_01710 and CA264_01715 are separated by 62 nucleotides CA264_01715 and CA264_01720 are separated by 93 nucleotides
CA264_01705: CA264_01705 - NADH-quinone oxidoreductase subunit H, at 399,315 to 400,418
_01705
CA264_01710: CA264_01710 - coenzyme A pyrophosphatase, at 400,614 to 401,261
_01710
CA264_01715: CA264_01715 - 4Fe-4S ferredoxin, at 401,324 to 401,926
_01715
CA264_01720: CA264_01720 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, at 402,020 to 402,547
_01720
Position (kb) 400
401
402 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 399.614 kb on - strand, within CA264_01705 at 399.683 kb on + strand, within CA264_01705 at 399.693 kb on + strand, within CA264_01705 at 399.693 kb on + strand, within CA264_01705 at 399.694 kb on - strand, within CA264_01705 at 399.764 kb on - strand, within CA264_01705 at 399.889 kb on + strand, within CA264_01705 at 399.890 kb on - strand, within CA264_01705 at 399.895 kb on + strand, within CA264_01705 at 399.896 kb on - strand, within CA264_01705 at 399.899 kb on + strand, within CA264_01705 at 399.920 kb on + strand, within CA264_01705 at 399.924 kb on - strand, within CA264_01705 at 399.924 kb on - strand, within CA264_01705 at 399.933 kb on - strand, within CA264_01705 at 399.933 kb on - strand, within CA264_01705 at 399.948 kb on - strand, within CA264_01705 at 400.103 kb on + strand, within CA264_01705 at 400.103 kb on + strand, within CA264_01705 at 400.104 kb on - strand, within CA264_01705 at 400.107 kb on - strand, within CA264_01705 at 400.198 kb on - strand, within CA264_01705 at 400.234 kb on + strand, within CA264_01705 at 400.235 kb on - strand, within CA264_01705 at 400.235 kb on - strand, within CA264_01705 at 400.298 kb on - strand, within CA264_01705 at 400.416 kb on + strand at 400.416 kb on + strand at 400.422 kb on - strand at 400.450 kb on - strand at 400.456 kb on - strand at 400.456 kb on - strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.460 kb on + strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.461 kb on - strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.462 kb on + strand at 400.496 kb on - strand at 400.507 kb on + strand at 400.508 kb on - strand at 400.510 kb on - strand at 400.535 kb on + strand at 400.597 kb on - strand at 400.597 kb on - strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.633 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.637 kb on + strand at 400.660 kb on + strand at 400.757 kb on - strand, within CA264_01710 at 400.785 kb on - strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.849 kb on + strand, within CA264_01710 at 400.925 kb on + strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 400.992 kb on - strand, within CA264_01710 at 401.013 kb on + strand, within CA264_01710 at 401.015 kb on + strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.016 kb on - strand, within CA264_01710 at 401.018 kb on - strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.068 kb on + strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.069 kb on - strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.074 kb on + strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.126 kb on - strand, within CA264_01710 at 401.133 kb on - strand at 401.157 kb on + strand, within CA264_01710 at 401.158 kb on - strand, within CA264_01710 at 401.177 kb on + strand, within CA264_01710 at 401.178 kb on - strand, within CA264_01710 at 401.224 kb on + strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.225 kb on - strand at 401.228 kb on + strand at 401.368 kb on - strand at 401.368 kb on - strand at 401.441 kb on + strand, within CA264_01715 at 401.442 kb on - strand, within CA264_01715 at 401.442 kb on - strand, within CA264_01715 at 401.546 kb on - strand, within CA264_01715 at 401.622 kb on + strand, within CA264_01715 at 401.676 kb on - strand, within CA264_01715 at 401.693 kb on - strand, within CA264_01715 at 402.030 kb on + strand at 402.030 kb on + strand at 402.031 kb on - strand at 402.031 kb on - strand at 402.091 kb on - strand, within CA264_01720 at 402.241 kb on + strand, within CA264_01720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.025 mg/ml remove 399,614 - CA264_01705 0.27 -1.2 399,683 + CA264_01705 0.33 -0.3 399,693 + CA264_01705 0.34 -1.9 399,693 + CA264_01705 0.34 -1.8 399,694 - CA264_01705 0.34 -3.9 399,764 - CA264_01705 0.41 -1.7 399,889 + CA264_01705 0.52 -2.4 399,890 - CA264_01705 0.52 -1.0 399,895 + CA264_01705 0.53 -0.6 399,896 - CA264_01705 0.53 +0.6 399,899 + CA264_01705 0.53 -1.0 399,920 + CA264_01705 0.55 -2.7 399,924 - CA264_01705 0.55 -0.7 399,924 - CA264_01705 0.55 -2.0 399,933 - CA264_01705 0.56 -1.0 399,933 - CA264_01705 0.56 -1.0 399,948 - CA264_01705 0.57 -2.1 400,103 + CA264_01705 0.71 -2.3 400,103 + CA264_01705 0.71 -2.0 400,104 - CA264_01705 0.71 -2.8 400,107 - CA264_01705 0.72 -0.2 400,198 - CA264_01705 0.80 -1.7 400,234 + CA264_01705 0.83 -0.4 400,235 - CA264_01705 0.83 -0.6 400,235 - CA264_01705 0.83 -2.6 400,298 - CA264_01705 0.89 -1.6 400,416 + +0.4 400,416 + -1.5 400,422 - -0.7 400,450 - -1.1 400,456 - +0.1 400,456 - +1.0 400,460 + -0.5 400,460 + +0.6 400,460 + +0.9 400,460 + +0.6 400,461 - +0.3 400,461 - +0.6 400,461 - +1.4 400,461 - -0.4 400,462 + +0.4 400,462 + +0.4 400,462 + +0.1 400,496 - -0.9 400,507 + +1.0 400,508 - -0.3 400,510 - -0.2 400,535 + +0.6 400,597 - -0.5 400,597 - +1.1 400,633 + +0.3 400,633 + +0.9 400,633 + +0.0 400,637 + +1.5 400,637 + +0.2 400,637 + +1.0 400,637 + +0.4 400,660 + +0.4 400,757 - CA264_01710 0.22 +0.1 400,785 - CA264_01710 0.26 -0.6 400,849 + CA264_01710 0.36 +0.3 400,849 + CA264_01710 0.36 +1.8 400,925 + CA264_01710 0.48 +0.3 400,992 - CA264_01710 0.58 +0.3 400,992 - CA264_01710 0.58 +1.0 400,992 - CA264_01710 0.58 -0.2 401,013 + CA264_01710 0.62 +0.4 401,015 + CA264_01710 0.62 +0.7 401,016 - CA264_01710 0.62 +0.1 401,016 - CA264_01710 0.62 -1.1 401,018 - CA264_01710 0.62 +0.6 401,068 + CA264_01710 0.70 +0.8 401,068 + CA264_01710 0.70 -0.1 401,069 - CA264_01710 0.70 +0.1 401,069 - CA264_01710 0.70 +0.8 401,069 - CA264_01710 0.70 +0.4 401,074 + CA264_01710 0.71 +0.0 401,074 + CA264_01710 0.71 +0.7 401,074 + CA264_01710 0.71 +0.7 401,126 - CA264_01710 0.79 +0.0 401,126 - CA264_01710 0.79 +1.0 401,133 - +2.4 401,157 + CA264_01710 0.84 +1.6 401,158 - CA264_01710 0.84 +0.3 401,177 + CA264_01710 0.87 +1.1 401,178 - CA264_01710 0.87 +0.7 401,224 + +0.3 401,225 - -0.3 401,225 - +0.2 401,225 - -0.6 401,228 + -0.0 401,368 - -0.2 401,368 - +1.4 401,441 + CA264_01715 0.19 -0.7 401,442 - CA264_01715 0.20 -3.2 401,442 - CA264_01715 0.20 -0.7 401,546 - CA264_01715 0.37 +0.8 401,622 + CA264_01715 0.49 -1.7 401,676 - CA264_01715 0.58 -0.5 401,693 - CA264_01715 0.61 -0.3 402,030 + -0.2 402,030 + -0.2 402,031 - +0.1 402,031 - -0.3 402,091 - CA264_01720 0.13 -0.6 402,241 + CA264_01720 0.42 -3.8
Or see this region's nucleotide sequence